HEADER VIRAL PROTEIN 27-MAY-25 7IDZ TITLE PANDDA ANALYSIS GROUP DEPOSITION -- SARS-COV-2 NSP1 CRYSTAL F02 TITLE 2 (DATASET 1) FROM THE KIT LIBRARY SCREENING CAMPAIGN, DATA USED FOR TITLE 3 GROUND STATE CALCULATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOST TRANSLATION INHIBITOR NSP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LEADER PROTEIN,NON-STRUCTURAL PROTEIN 1,NSP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS SARS-COV-2, FRAGMENT SCREEN, NSP1, KIT LIBRARY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.LENNARTZ,M.S.WEISS REVDAT 2 10-DEC-25 7IDZ 1 JRNL REVDAT 1 22-OCT-25 7IDZ 0 JRNL AUTH F.LENNARTZ,J.WOLLENHAUPT,M.OELKER,P.FROLING,U.MUELLER, JRNL AUTH 2 A.DECKERS,C.GRATHWOL,S.BRASE,N.JUNG,M.S.WEISS JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING AGAINST SARS-COV-2 JRNL TITL 2 NONSTRUCTURAL PROTEIN 1 USING THE F2X-ENTRY SCREEN AND A JRNL TITL 3 NEWLY DEVELOPED FRAGMENT LIBRARY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 81 630 2025 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 41081353 JRNL DOI 10.1107/S2059798325008563 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 2780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.413 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9100 - 2.8900 1.00 2641 139 0.1924 0.4132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 911 REMARK 3 ANGLE : 1.829 1238 REMARK 3 CHIRALITY : 0.073 145 REMARK 3 PLANARITY : 0.014 162 REMARK 3 DIHEDRAL : 20.200 344 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN B AND RESID 2:11) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0472 -14.7570 -0.2836 REMARK 3 T TENSOR REMARK 3 T11: 0.6881 T22: -0.2216 REMARK 3 T33: 0.7461 T12: -0.0156 REMARK 3 T13: 0.0876 T23: -0.1132 REMARK 3 L TENSOR REMARK 3 L11: 0.5557 L22: 0.9107 REMARK 3 L33: 0.5180 L12: -0.0464 REMARK 3 L13: 0.2560 L23: -0.1772 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.0614 S13: 0.5712 REMARK 3 S21: 0.0131 S22: -0.2775 S23: -0.0113 REMARK 3 S31: -0.5384 S32: 0.0034 S33: -0.3267 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 12:25) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1980 -27.1716 14.6100 REMARK 3 T TENSOR REMARK 3 T11: 0.4357 T22: 0.4469 REMARK 3 T33: 0.4040 T12: -0.1245 REMARK 3 T13: 0.0153 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 0.0251 L22: 0.0432 REMARK 3 L33: 0.2662 L12: -0.0189 REMARK 3 L13: 0.0934 L23: -0.0962 REMARK 3 S TENSOR REMARK 3 S11: 0.1095 S12: -0.4339 S13: -0.4281 REMARK 3 S21: 0.0188 S22: 0.0709 S23: -0.2698 REMARK 3 S31: -0.6070 S32: 0.4521 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 26:45) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7617 -16.9075 12.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.3840 T22: 0.3699 REMARK 3 T33: 0.3729 T12: -0.0794 REMARK 3 T13: 0.0201 T23: -0.0825 REMARK 3 L TENSOR REMARK 3 L11: 0.2568 L22: 0.0944 REMARK 3 L33: 0.1577 L12: -0.0223 REMARK 3 L13: 0.1533 L23: -0.0882 REMARK 3 S TENSOR REMARK 3 S11: 0.6387 S12: -0.6150 S13: 0.1146 REMARK 3 S21: -0.0774 S22: -0.5287 S23: 0.5631 REMARK 3 S31: 0.0831 S32: -0.4284 S33: 0.0038 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 46:51) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2688 -23.7613 11.8458 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.7645 REMARK 3 T33: 0.6938 T12: -0.0367 REMARK 3 T13: 0.0669 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 0.0163 L22: 0.0956 REMARK 3 L33: 0.0673 L12: -0.0419 REMARK 3 L13: 0.0339 L23: -0.0841 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: -0.0023 S13: 0.1503 REMARK 3 S21: 0.0258 S22: 0.2388 S23: -0.1075 REMARK 3 S31: -0.0634 S32: 0.1196 S33: 0.1637 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 52:64) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0664 -18.2304 15.5144 REMARK 3 T TENSOR REMARK 3 T11: 0.6701 T22: 0.8628 REMARK 3 T33: 0.3517 T12: -0.0837 REMARK 3 T13: 0.3820 T23: -0.4028 REMARK 3 L TENSOR REMARK 3 L11: 2.4824 L22: 1.5376 REMARK 3 L33: 0.1133 L12: -0.3257 REMARK 3 L13: 0.0995 L23: -0.4165 REMARK 3 S TENSOR REMARK 3 S11: 0.2715 S12: -0.4609 S13: -0.2137 REMARK 3 S21: 0.1222 S22: -0.2829 S23: 0.2190 REMARK 3 S31: -0.7087 S32: 0.4763 S33: 1.1406 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 65:74) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6036 -8.9382 -4.0664 REMARK 3 T TENSOR REMARK 3 T11: 1.4391 T22: 0.6620 REMARK 3 T33: 0.7175 T12: 0.1640 REMARK 3 T13: -0.2112 T23: 0.4090 REMARK 3 L TENSOR REMARK 3 L11: 2.6575 L22: 6.4614 REMARK 3 L33: 3.6697 L12: -0.3751 REMARK 3 L13: -0.7507 L23: 2.3321 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: 0.1773 S13: -0.0419 REMARK 3 S21: -0.5093 S22: 0.4978 S23: 0.3375 REMARK 3 S31: 0.2123 S32: -0.3761 S33: 0.8788 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 75:83) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2431 -10.4053 10.5870 REMARK 3 T TENSOR REMARK 3 T11: 0.6064 T22: 0.3503 REMARK 3 T33: 0.5374 T12: 0.0434 REMARK 3 T13: 0.0342 T23: -0.1717 REMARK 3 L TENSOR REMARK 3 L11: 0.2001 L22: 0.1507 REMARK 3 L33: 0.2309 L12: 0.1761 REMARK 3 L13: -0.1201 L23: -0.1200 REMARK 3 S TENSOR REMARK 3 S11: 0.3553 S12: 0.1268 S13: 0.3351 REMARK 3 S21: 0.0863 S22: 0.4012 S23: 0.2844 REMARK 3 S31: 0.0967 S32: 0.0615 S33: 0.0243 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 84:93) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8271 -8.2427 16.7066 REMARK 3 T TENSOR REMARK 3 T11: 0.4580 T22: 0.8102 REMARK 3 T33: 0.7890 T12: 0.0275 REMARK 3 T13: 0.0906 T23: -0.3033 REMARK 3 L TENSOR REMARK 3 L11: 0.9080 L22: 4.7399 REMARK 3 L33: 2.4333 L12: 2.0507 REMARK 3 L13: -1.2909 L23: -2.6653 REMARK 3 S TENSOR REMARK 3 S11: 0.5583 S12: -0.1500 S13: -0.0099 REMARK 3 S21: 0.4810 S22: -0.8499 S23: 0.3157 REMARK 3 S31: -0.4934 S32: 0.2252 S33: -0.2042 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 94:107) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6414 -25.0797 7.8741 REMARK 3 T TENSOR REMARK 3 T11: 0.4228 T22: 0.5614 REMARK 3 T33: 0.5350 T12: 0.0675 REMARK 3 T13: -0.0721 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.1938 L22: 0.2414 REMARK 3 L33: 0.1388 L12: 0.1677 REMARK 3 L13: 0.1545 L23: 0.0907 REMARK 3 S TENSOR REMARK 3 S11: 0.2807 S12: -0.3174 S13: 0.2231 REMARK 3 S21: -0.8632 S22: -0.3179 S23: -0.2480 REMARK 3 S31: -0.2058 S32: -0.2306 S33: -0.0026 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 108:116) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9791 -15.1230 0.5526 REMARK 3 T TENSOR REMARK 3 T11: 0.8679 T22: 0.6232 REMARK 3 T33: 0.2607 T12: 0.2356 REMARK 3 T13: 0.2312 T23: -0.0710 REMARK 3 L TENSOR REMARK 3 L11: 0.1262 L22: 0.0557 REMARK 3 L33: 0.1804 L12: -0.0229 REMARK 3 L13: 0.1457 L23: -0.0434 REMARK 3 S TENSOR REMARK 3 S11: 0.3205 S12: -0.1752 S13: 0.1772 REMARK 3 S21: -0.3955 S22: -0.0945 S23: -0.5702 REMARK 3 S31: 0.4839 S32: -0.2648 S33: 0.0091 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7IDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1001408627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XDSAPP REMARK 200 DATA SCALING SOFTWARE : XDS, XDSAPP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : 36.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5 AND 25% (W/V) PEG REMARK 280 3350. REPRODUCIBILITY WAS IMPROVED BY SEEDING., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.44500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 19.06500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 19.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.16750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 19.06500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 19.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.72250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 19.06500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 19.06500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.16750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 19.06500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 19.06500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.72250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.44500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 10 REMARK 465 ARG A 77 REMARK 465 THR A 78 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 125 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 17 N CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 41 HE2 HIS A 45 1.26 REMARK 500 O VAL A 23 HH12 ARG A 29 1.53 REMARK 500 O LEU A 46 H GLY A 49 1.59 REMARK 500 OE2 GLU A 41 NE2 HIS A 45 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 41 CB GLU A 41 CG 0.190 REMARK 500 GLU A 41 CG GLU A 41 CD 0.184 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 41 OE1 - CD - OE2 ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 12 -67.70 -17.47 REMARK 500 ARG A 24 0.89 -60.88 REMARK 500 LEU A 46 -81.31 -61.67 REMARK 500 LYS A 47 -13.92 -45.56 REMARK 500 ASP A 75 102.36 174.81 REMARK 500 HIS A 81 29.27 47.94 REMARK 500 ALA A 117 139.53 154.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 7IDZ A 10 125 UNP P0DTD1 R1AB_SARS2 10 125 SEQRES 1 A 116 GLU LYS THR HIS VAL GLN LEU SER LEU PRO VAL LEU GLN SEQRES 2 A 116 VAL ARG ASP VAL LEU VAL ARG GLY PHE GLY ASP SER VAL SEQRES 3 A 116 GLU GLU VAL LEU SER GLU ALA ARG GLN HIS LEU LYS ASP SEQRES 4 A 116 GLY THR CYS GLY LEU VAL GLU VAL GLU LYS GLY VAL LEU SEQRES 5 A 116 PRO GLN LEU GLU GLN PRO TYR VAL PHE ILE LYS ARG SER SEQRES 6 A 116 ASP ALA ARG THR ALA PRO HIS GLY HIS VAL MET VAL GLU SEQRES 7 A 116 LEU VAL ALA GLU LEU GLU GLY ILE GLN TYR GLY ARG SER SEQRES 8 A 116 GLY GLU THR LEU GLY VAL LEU VAL PRO HIS VAL GLY GLU SEQRES 9 A 116 ILE PRO VAL ALA TYR ARG LYS VAL LEU LEU ARG LYS HELIX 1 AA1 GLN A 22 VAL A 26 5 5 HELIX 2 AA2 SER A 34 ASP A 48 1 15 HELIX 3 AA3 VAL A 60 LEU A 64 5 5 HELIX 4 AA4 ALA A 79 HIS A 83 5 5 SHEET 1 AA1 8 ILE A 95 TYR A 97 0 SHEET 2 AA1 8 VAL A 84 LEU A 92 -1 N ALA A 90 O TYR A 97 SHEET 3 AA1 8 TYR A 118 LEU A 123 1 O LEU A 122 N VAL A 86 SHEET 4 AA1 8 GLN A 15 LEU A 21 -1 N LEU A 16 O VAL A 121 SHEET 5 AA1 8 CYS A 51 VAL A 54 1 O LEU A 53 N LEU A 21 SHEET 6 AA1 8 THR A 103 PRO A 109 -1 O VAL A 106 N VAL A 54 SHEET 7 AA1 8 TYR A 68 ASP A 75 -1 N ILE A 71 O LEU A 104 SHEET 8 AA1 8 VAL A 84 LEU A 92 -1 O GLU A 91 N TYR A 68 CISPEP 1 GLN A 66 PRO A 67 0 -4.54 CRYST1 38.130 38.130 146.890 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006808 0.00000 MASTER 460 0 0 4 8 0 0 6 873 1 0 9 END