HEADER CELL ADHESION 20-JUL-20 7JGZ TITLE PROTOCADHERIN GAMMAC4 EC1-4 CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOCADHERIN GAMMA C4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTOCADHERIN GAMMA SUBFAMILY C,4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PCDHGC4; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: FREESTYLE 293-F CELLS KEYWDS PROTOCADHERIN, CADHERIN, CELL-SURFACE RECEPTOR, NEURONAL SELF- KEYWDS 2 AVOIDANCE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.M.GOODMAN,S.MANNEPALLI,B.HONIG,L.SHAPIRO REVDAT 3 18-OCT-23 7JGZ 1 REMARK REVDAT 2 23-MAR-22 7JGZ 1 JRNL REVDAT 1 14-JUL-21 7JGZ 0 JRNL AUTH K.M.GOODMAN,P.S.KATSAMBA,R.RUBINSTEIN,G.AHLSEN,F.BAHNA, JRNL AUTH 2 S.MANNEPALLI,H.DAN,R.V.SAMPOGNA,L.SHAPIRO,B.HONIG JRNL TITL HOW CLUSTERED PROTOCADHERIN BINDING SPECIFICITY IS TUNED FOR JRNL TITL 2 NEURONAL SELF-/NONSELF-RECOGNITION. JRNL REF ELIFE V. 11 2022 JRNL REFN ESSN 2050-084X JRNL PMID 35253643 JRNL DOI 10.7554/ELIFE.72416 REMARK 2 REMARK 2 RESOLUTION. 3.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.5 REMARK 3 NUMBER OF REFLECTIONS : 7545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5000 - 5.0500 1.00 3600 189 0.2026 0.2528 REMARK 3 2 5.0500 - 4.0100 0.83 2874 151 0.2431 0.2966 REMARK 3 3 4.0100 - 3.5100 0.20 694 37 0.3027 0.2919 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.417 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.869 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3306 REMARK 3 ANGLE : 0.889 4529 REMARK 3 CHIRALITY : 0.050 546 REMARK 3 PLANARITY : 0.006 598 REMARK 3 DIHEDRAL : 10.611 1942 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7203 131.4247 56.1633 REMARK 3 T TENSOR REMARK 3 T11: 1.1520 T22: 1.8820 REMARK 3 T33: 1.0617 T12: -0.4748 REMARK 3 T13: -0.3204 T23: 0.3563 REMARK 3 L TENSOR REMARK 3 L11: 1.5735 L22: 1.0782 REMARK 3 L33: 3.0206 L12: -0.1466 REMARK 3 L13: 1.9744 L23: 0.5770 REMARK 3 S TENSOR REMARK 3 S11: -0.0880 S12: -0.7764 S13: -0.3740 REMARK 3 S21: 0.4631 S22: -0.0419 S23: -0.3579 REMARK 3 S31: -1.0123 S32: 1.7065 S33: 0.0201 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8285 135.5273 16.7794 REMARK 3 T TENSOR REMARK 3 T11: 0.7542 T22: 0.2231 REMARK 3 T33: 0.5590 T12: -0.0905 REMARK 3 T13: -0.0910 T23: 0.1599 REMARK 3 L TENSOR REMARK 3 L11: 3.3549 L22: 2.6248 REMARK 3 L33: 4.5084 L12: 0.4224 REMARK 3 L13: 0.3099 L23: -0.8599 REMARK 3 S TENSOR REMARK 3 S11: 0.1688 S12: -0.4334 S13: -0.6604 REMARK 3 S21: 0.0253 S22: -0.2710 S23: -0.1739 REMARK 3 S31: -0.2530 S32: 0.1008 S33: 0.0793 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9972 125.8542 -27.6936 REMARK 3 T TENSOR REMARK 3 T11: 0.5416 T22: 0.2968 REMARK 3 T33: 0.4402 T12: 0.1124 REMARK 3 T13: -0.0128 T23: -0.1922 REMARK 3 L TENSOR REMARK 3 L11: 2.2728 L22: 2.1031 REMARK 3 L33: 5.4273 L12: -0.1546 REMARK 3 L13: 0.8367 L23: -0.7548 REMARK 3 S TENSOR REMARK 3 S11: -0.1389 S12: 0.2540 S13: -0.1830 REMARK 3 S21: 0.1652 S22: 0.1870 S23: 0.0761 REMARK 3 S31: 0.2877 S32: -0.3172 S33: 0.0436 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 417 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4265 122.1634 -72.4940 REMARK 3 T TENSOR REMARK 3 T11: 0.9688 T22: 1.3213 REMARK 3 T33: 0.6663 T12: 0.4551 REMARK 3 T13: -0.0575 T23: -0.2285 REMARK 3 L TENSOR REMARK 3 L11: 3.5013 L22: 1.2678 REMARK 3 L33: 7.1815 L12: 0.7182 REMARK 3 L13: 3.0231 L23: 0.0914 REMARK 3 S TENSOR REMARK 3 S11: 0.2622 S12: 0.8271 S13: -0.2988 REMARK 3 S21: -0.8248 S22: -0.2203 S23: 0.3864 REMARK 3 S31: -1.0064 S32: -0.8374 S33: -0.0262 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PLEASE NOTE ELLIPSOIDAL RESOLUTION REMARK 3 LIMITS OF 4.6/3.9/3.5 WERE APPLIED TO THE DATA. THE COMPLETENESS REMARK 3 WITHIN THE ELLIPSOIDAL LIMITS IS 96.8%. REMARK 4 REMARK 4 7JGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000249333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7545 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.21500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 12.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZPO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG8000, 20% ETHYLENE REMARK 280 GLYCOL, 10% MORPHEUS AMINO ACIDS (MOLECULAR DIMENSIONS), AND 0.1 REMARK 280 M MORPHEUS BUFFER SYSTEM 2 (HEPES/MOPS BUFFER) PH 7.5, BATCH REMARK 280 MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.61000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.24000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.84000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.24000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.61000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.84000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.61000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 97.24000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.61000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 97.24000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -37.61000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 418 REMARK 465 VAL A 419 REMARK 465 ASN A 420 REMARK 465 ASP A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 1 CG CD OE1 NE2 REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 51 CG OD1 OD2 REMARK 470 MET A 87 CG SD CE REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 ARG A 373 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 4 OD2 ASP A 22 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 158 OH TYR A 286 7455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 58 -68.30 -90.89 REMARK 500 ASN A 98 59.31 -92.81 REMARK 500 PRO A 365 45.42 -81.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 GLU A 64 OE1 73.8 REMARK 620 3 GLU A 64 OE2 84.5 50.1 REMARK 620 4 ASP A 96 OD1 71.1 105.7 63.1 REMARK 620 5 VAL A 97 O 94.1 166.4 136.5 75.3 REMARK 620 6 ASP A 99 OD1 106.8 96.8 141.4 155.5 80.6 REMARK 620 7 ASP A 132 OD1 156.7 103.2 76.7 88.1 90.4 96.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 9 OE2 REMARK 620 2 ASP A 62 OD1 77.9 REMARK 620 3 GLU A 64 OE1 122.3 68.8 REMARK 620 4 ASP A 99 OD2 78.9 144.9 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 98 OD1 REMARK 620 2 HIS A 100 O 90.2 REMARK 620 3 ASP A 130 OD1 150.0 97.9 REMARK 620 4 ASP A 130 OD2 156.2 88.8 53.4 REMARK 620 5 ASP A 132 OD2 68.9 91.7 82.0 134.9 REMARK 620 6 ASN A 136 O 94.5 175.1 77.4 87.2 89.2 REMARK 620 7 ASP A 187 OD2 81.1 85.4 128.2 75.1 149.8 96.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 115 OE2 REMARK 620 2 ASP A 172 OD1 52.7 REMARK 620 3 GLU A 174 OE1 50.6 59.2 REMARK 620 4 ASP A 208 OD2 80.3 132.9 90.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 507 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 115 OE1 REMARK 620 2 GLU A 174 OE1 79.4 REMARK 620 3 GLU A 174 OE2 106.1 53.7 REMARK 620 4 ASP A 205 OD1 91.7 125.0 78.3 REMARK 620 5 VAL A 206 O 76.3 147.9 154.8 76.6 REMARK 620 6 ASP A 208 OD1 76.1 85.2 136.2 145.2 69.0 REMARK 620 7 ASP A 241 OD1 165.5 96.1 81.4 102.1 102.3 89.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 209 O REMARK 620 2 ASP A 239 OD1 102.3 REMARK 620 3 ASP A 239 OD2 85.0 52.4 REMARK 620 4 ASP A 241 OD2 84.3 102.0 149.0 REMARK 620 5 SER A 245 O 172.0 85.4 98.3 96.2 REMARK 620 6 ASP A 295 OD2 76.8 131.9 80.0 125.3 96.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 510 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 224 OE2 REMARK 620 2 GLU A 282 OE1 87.0 REMARK 620 3 GLU A 282 OE2 117.0 51.9 REMARK 620 4 ASP A 313 OD1 77.7 121.9 86.6 REMARK 620 5 VAL A 314 O 82.3 164.1 144.0 67.2 REMARK 620 6 ASP A 316 OD1 98.3 100.3 130.3 137.0 69.9 REMARK 620 7 ASP A 349 OD1 169.1 103.8 69.8 94.7 87.6 81.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 509 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 280 OD1 REMARK 620 2 GLU A 282 OE1 64.5 REMARK 620 3 ASP A 316 OD2 126.4 103.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 511 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 315 OD1 REMARK 620 2 ASN A 317 O 110.4 REMARK 620 3 ASP A 347 OD1 140.0 80.8 REMARK 620 4 ASP A 347 OD2 158.2 90.2 48.0 REMARK 620 5 ASP A 349 OD2 70.5 75.6 76.0 123.9 REMARK 620 6 ASN A 353 O 82.4 162.4 81.7 79.3 98.5 REMARK 620 7 ASP A 400 OD2 81.7 96.7 136.6 88.9 145.7 97.2 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6WZH RELATED DB: PDB DBREF 7JGZ A 1 421 UNP Q91XX0 Q91XX0_MOUSE 33 453 SEQADV 7JGZ HIS A 422 UNP Q91XX0 EXPRESSION TAG SEQADV 7JGZ HIS A 423 UNP Q91XX0 EXPRESSION TAG SEQADV 7JGZ HIS A 424 UNP Q91XX0 EXPRESSION TAG SEQADV 7JGZ HIS A 425 UNP Q91XX0 EXPRESSION TAG SEQADV 7JGZ HIS A 426 UNP Q91XX0 EXPRESSION TAG SEQADV 7JGZ HIS A 427 UNP Q91XX0 EXPRESSION TAG SEQADV 7JGZ HIS A 428 UNP Q91XX0 EXPRESSION TAG SEQADV 7JGZ HIS A 429 UNP Q91XX0 EXPRESSION TAG SEQRES 1 A 429 GLN ILE ARG TYR PRO VAL PRO GLU GLU SER GLN GLU GLY SEQRES 2 A 429 THR PHE VAL GLY ASN VAL ALA GLN ASP PHE LEU LEU ASP SEQRES 3 A 429 THR GLU SER LEU SER ALA ARG ARG LEU GLN VAL ALA GLY SEQRES 4 A 429 GLU VAL ASN GLN ARG HIS PHE ARG VAL ASP LEU ASP SER SEQRES 5 A 429 GLY ALA LEU LEU ILE LYS ASN PRO ILE ASP ARG GLU ALA SEQRES 6 A 429 LEU CYS GLY LEU SER ALA SER CYS ILE VAL PRO LEU GLU SEQRES 7 A 429 PHE VAL THR GLU GLY PRO LEU GLU MET TYR ARG ALA GLU SEQRES 8 A 429 VAL GLU ILE VAL ASP VAL ASN ASP HIS ALA PRO ARG PHE SEQRES 9 A 429 PRO ARG GLN GLN LEU ASP LEU GLU ILE GLY GLU ALA ALA SEQRES 10 A 429 PRO PRO GLY GLN ARG PHE PRO LEU GLU LYS ALA GLN ASP SEQRES 11 A 429 ALA ASP VAL GLY SER ASN SER ILE SER SER TYR ARG LEU SEQRES 12 A 429 SER SER ASN GLU HIS PHE ALA LEU ASP VAL LYS LYS ARG SEQRES 13 A 429 SER ASP GLY SER LEU VAL PRO GLU LEU LEU LEU GLU LYS SEQRES 14 A 429 PRO LEU ASP ARG GLU LYS GLN SER ASP TYR ARG LEU VAL SEQRES 15 A 429 LEU THR ALA VAL ASP GLY GLY ASN PRO PRO ARG SER GLY SEQRES 16 A 429 THR ALA GLU LEU ARG VAL SER VAL LEU ASP VAL ASN ASP SEQRES 17 A 429 ASN ALA PRO ALA PHE GLN GLN SER SER TYR ARG ILE SER SEQRES 18 A 429 VAL LEU GLU SER ALA PRO ALA GLY MET VAL LEU ILE GLN SEQRES 19 A 429 LEU ASN ALA SER ASP PRO ASP LEU GLY PRO SER GLY ASN SEQRES 20 A 429 VAL THR PHE SER PHE SER GLY HIS THR PRO ASP ARG VAL SEQRES 21 A 429 ARG ASN LEU PHE SER LEU HIS PRO THR THR GLY LYS LEU SEQRES 22 A 429 THR LEU GLN GLY PRO LEU ASP PHE GLU SER GLU ASN TYR SEQRES 23 A 429 TYR GLU PHE ASP VAL ARG ALA ARG ASP GLY GLY SER PRO SEQRES 24 A 429 ALA MET GLU GLN HIS CYS SER LEU ARG VAL ASP LEU LEU SEQRES 25 A 429 ASP VAL ASN ASP ASN ALA PRO HIS ILE THR VAL THR SER SEQRES 26 A 429 GLU LEU GLY THR LEU PRO GLU SER ALA GLU PRO GLY THR SEQRES 27 A 429 VAL VAL ALA LEU ILE SER VAL GLN ASP PRO ASP SER GLY SEQRES 28 A 429 SER ASN GLY ASP VAL SER LEU ARG ILE PRO ASP HIS LEU SEQRES 29 A 429 PRO PHE ALA LEU LYS SER ALA PHE ARG ASN GLN PHE SER SEQRES 30 A 429 LEU VAL THR ALA GLY PRO LEU ASP ARG GLU ALA ARG SER SEQRES 31 A 429 SER TYR ASP ILE MET VAL THR ALA SER ASP ALA GLY ASN SEQRES 32 A 429 PRO PRO LEU SER THR HIS ARG THR ILE PHE LEU ASN ILE SEQRES 33 A 429 SER ASP VAL ASN ASP HIS HIS HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET FUC B 4 10 HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET MAN A 501 11 HET MAN A 502 11 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET CA A 507 1 HET CA A 508 1 HET CA A 509 1 HET CA A 510 1 HET CA A 511 1 HET EDO A 512 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 FUC 2(C6 H12 O5) FORMUL 4 MAN 2(C6 H12 O6) FORMUL 6 CA 9(CA 2+) FORMUL 15 EDO C2 H6 O2 HELIX 1 AA1 ASN A 18 PHE A 23 1 6 HELIX 2 AA2 ASP A 26 GLU A 28 5 3 HELIX 3 AA3 SER A 29 ARG A 34 1 6 HELIX 4 AA4 GLY A 39 HIS A 45 1 7 HELIX 5 AA5 ASP A 62 GLY A 68 1 7 HELIX 6 AA6 VAL A 133 ASN A 136 5 4 HELIX 7 AA7 LEU A 242 GLY A 246 5 5 HELIX 8 AA8 PRO A 257 LEU A 263 1 7 HELIX 9 AA9 SER A 350 GLY A 354 5 5 SHEET 1 AA1 4 ARG A 3 PRO A 7 0 SHEET 2 AA1 4 GLU A 86 VAL A 95 1 O GLU A 93 N TYR A 4 SHEET 3 AA1 4 ILE A 74 THR A 81 -1 N LEU A 77 O ALA A 90 SHEET 4 AA1 4 GLN A 36 VAL A 37 -1 N GLN A 36 O VAL A 80 SHEET 1 AA2 3 PHE A 15 GLY A 17 0 SHEET 2 AA2 3 LEU A 55 ILE A 57 -1 O LEU A 55 N GLY A 17 SHEET 3 AA2 3 PHE A 46 VAL A 48 -1 N ARG A 47 O LEU A 56 SHEET 1 AA3 4 GLN A 108 GLY A 114 0 SHEET 2 AA3 4 SER A 194 LEU A 204 1 O LEU A 204 N ILE A 113 SHEET 3 AA3 4 ASP A 178 ASP A 187 -1 N LEU A 181 O LEU A 199 SHEET 4 AA3 4 ILE A 138 LEU A 143 -1 N SER A 139 O VAL A 186 SHEET 1 AA4 3 ARG A 122 PRO A 124 0 SHEET 2 AA4 3 LEU A 161 LEU A 167 -1 O LEU A 165 N PHE A 123 SHEET 3 AA4 3 PHE A 149 LYS A 155 -1 N ALA A 150 O LEU A 166 SHEET 1 AA5 2 ALA A 212 PHE A 213 0 SHEET 2 AA5 2 ALA A 237 SER A 238 -1 O SER A 238 N ALA A 212 SHEET 1 AA6 4 SER A 217 LEU A 223 0 SHEET 2 AA6 4 GLU A 302 LEU A 312 1 O ASP A 310 N ILE A 220 SHEET 3 AA6 4 TYR A 286 ASP A 295 -1 N PHE A 289 O LEU A 307 SHEET 4 AA6 4 VAL A 248 PHE A 252 -1 N SER A 251 O ARG A 292 SHEET 1 AA7 3 VAL A 231 GLN A 234 0 SHEET 2 AA7 3 LYS A 272 LEU A 275 -1 O LEU A 273 N ILE A 233 SHEET 3 AA7 3 PHE A 264 LEU A 266 -1 N SER A 265 O THR A 274 SHEET 1 AA8 4 HIS A 320 GLU A 326 0 SHEET 2 AA8 4 VAL A 339 GLN A 346 -1 O SER A 344 N THR A 322 SHEET 3 AA8 4 GLN A 375 THR A 380 -1 O LEU A 378 N VAL A 340 SHEET 4 AA8 4 PHE A 366 PHE A 372 -1 N LYS A 369 O SER A 377 SHEET 1 AA9 4 THR A 329 LEU A 330 0 SHEET 2 AA9 4 SER A 407 ILE A 416 1 O ASN A 415 N LEU A 330 SHEET 3 AA9 4 SER A 391 ASP A 400 -1 N VAL A 396 O ARG A 410 SHEET 4 AA9 4 VAL A 356 ARG A 359 -1 N ARG A 359 O THR A 397 SSBOND 1 CYS A 67 CYS A 73 1555 1555 2.02 LINK OG SER A 194 C1 MAN A 501 1555 1555 1.44 LINK OG1 THR A 196 C1 MAN A 502 1555 1555 1.44 LINK ND2 ASN A 236 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 247 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUC B 4 1555 1555 1.44 LINK O3 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.45 LINK OE2 GLU A 8 CA CA A 504 1555 1555 2.26 LINK OE2 GLU A 9 CA CA A 503 1555 1555 2.57 LINK OD1 ASP A 62 CA CA A 503 1555 1555 2.47 LINK OE1 GLU A 64 CA CA A 503 1555 1555 2.64 LINK OE1 GLU A 64 CA CA A 504 1555 1555 2.78 LINK OE2 GLU A 64 CA CA A 504 1555 1555 2.30 LINK OD1 ASP A 96 CA CA A 504 1555 1555 2.57 LINK O VAL A 97 CA CA A 504 1555 1555 2.52 LINK OD1 ASN A 98 CA CA A 505 1555 1555 2.49 LINK OD2 ASP A 99 CA CA A 503 1555 1555 2.81 LINK OD1 ASP A 99 CA CA A 504 1555 1555 2.36 LINK O HIS A 100 CA CA A 505 1555 1555 2.33 LINK OE2 GLU A 115 CA CA A 506 1555 1555 3.08 LINK OE1 GLU A 115 CA CA A 507 1555 1555 2.74 LINK OD1 ASP A 130 CA CA A 505 1555 1555 2.49 LINK OD2 ASP A 130 CA CA A 505 1555 1555 2.38 LINK OD1 ASP A 132 CA CA A 504 1555 1555 2.49 LINK OD2 ASP A 132 CA CA A 505 1555 1555 2.71 LINK O ASN A 136 CA CA A 505 1555 1555 2.52 LINK OD1 ASP A 172 CA CA A 506 1555 1555 2.84 LINK OE1 GLU A 174 CA CA A 506 1555 1555 3.07 LINK OE1 GLU A 174 CA CA A 507 1555 1555 2.53 LINK OE2 GLU A 174 CA CA A 507 1555 1555 2.32 LINK OD2 ASP A 187 CA CA A 505 1555 1555 2.91 LINK OD1 ASP A 205 CA CA A 507 1555 1555 2.36 LINK O VAL A 206 CA CA A 507 1555 1555 2.54 LINK OD2 ASP A 208 CA CA A 506 1555 1555 2.13 LINK OD1 ASP A 208 CA CA A 507 1555 1555 2.34 LINK O ASN A 209 CA CA A 508 1555 1555 2.35 LINK OE2 GLU A 224 CA CA A 510 1555 1555 2.27 LINK OD1 ASP A 239 CA CA A 508 1555 1555 2.34 LINK OD2 ASP A 239 CA CA A 508 1555 1555 2.60 LINK OD1 ASP A 241 CA CA A 507 1555 1555 2.67 LINK OD2 ASP A 241 CA CA A 508 1555 1555 2.63 LINK O SER A 245 CA CA A 508 1555 1555 2.37 LINK OD1 ASP A 280 CA CA A 509 1555 1555 2.42 LINK OE1 GLU A 282 CA CA A 509 1555 1555 2.66 LINK OE1 GLU A 282 CA CA A 510 1555 1555 2.70 LINK OE2 GLU A 282 CA CA A 510 1555 1555 2.20 LINK OD2 ASP A 295 CA CA A 508 1555 1555 2.87 LINK OD1 ASP A 313 CA CA A 510 1555 1555 2.62 LINK O VAL A 314 CA CA A 510 1555 1555 2.53 LINK OD1 ASN A 315 CA CA A 511 1555 1555 2.34 LINK OD2 ASP A 316 CA CA A 509 1555 1555 2.81 LINK OD1 ASP A 316 CA CA A 510 1555 1555 2.35 LINK O ASN A 317 CA CA A 511 1555 1555 2.31 LINK OD1 ASP A 347 CA CA A 511 1555 1555 2.86 LINK OD2 ASP A 347 CA CA A 511 1555 1555 2.46 LINK OD1 ASP A 349 CA CA A 510 1555 1555 2.44 LINK OD2 ASP A 349 CA CA A 511 1555 1555 2.52 LINK O ASN A 353 CA CA A 511 1555 1555 2.37 LINK OD2 ASP A 400 CA CA A 511 1555 1555 2.60 CISPEP 1 GLY A 83 PRO A 84 0 -4.22 CISPEP 2 ASN A 190 PRO A 191 0 1.06 CISPEP 3 SER A 298 PRO A 299 0 0.05 CISPEP 4 ASN A 403 PRO A 404 0 -1.59 CRYST1 75.220 115.680 194.480 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013294 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008645 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005142 0.00000