HEADER DE NOVO PROTEIN 20-JUL-20 7JH6 TITLE DE NOVO DESIGNED TWO-DOMAIN DI-ZN(II) AND PORPHYRIN-BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO-DOMAIN DI-ZN(II) AND PORPHYRIN-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOPROTEIN, INTER-DOMAIN COUPLING AND COOPERATION, DE NOVO KEYWDS 2 PROTEIN DESIGN, ALLOSTERY, SYNTHETIC PORPHYRIN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHMIDT,L.LIU,W.F.DEGRADO REVDAT 4 03-APR-24 7JH6 1 REMARK REVDAT 3 06-MAR-24 7JH6 1 REMARK REVDAT 2 23-JUN-21 7JH6 1 JRNL REVDAT 1 09-DEC-20 7JH6 0 JRNL AUTH F.PIRRO,N.SCHMIDT,J.LINCOFF,Z.X.WIDEL,N.F.POLIZZI,L.LIU, JRNL AUTH 2 M.J.THERIEN,M.GRABE,M.CHINO,A.LOMBARDI,W.F.DEGRADO JRNL TITL ALLOSTERIC COOPERATION IN A DE NOVO-DESIGNED TWO-DOMAIN JRNL TITL 2 PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 33246 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33318174 JRNL DOI 10.1073/PNAS.2017062117 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 708 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4900 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.4830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 200 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.70000 REMARK 3 B22 (A**2) : 2.29000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6175 ; 0.005 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 5656 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8366 ; 0.973 ; 1.718 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13314 ; 0.687 ; 1.646 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 692 ; 5.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 376 ;32.814 ;24.255 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1280 ;19.193 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;21.449 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 736 ; 0.038 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6748 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 964 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2780 ; 1.231 ;13.346 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2779 ; 1.231 ;13.347 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3468 ; 2.210 ;20.023 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3469 ; 2.210 ;20.022 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3395 ; 1.027 ;13.361 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3395 ; 1.027 ;13.362 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4899 ; 1.939 ;19.966 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 25014 ; 6.321 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 25014 ; 6.321 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 177 B 4 177 5713 0.09 0.05 REMARK 3 2 A 4 177 C 4 177 5696 0.09 0.05 REMARK 3 3 A 4 177 D 4 177 5675 0.09 0.05 REMARK 3 4 B 4 177 C 4 177 5895 0.04 0.05 REMARK 3 5 B 4 177 D 4 177 5867 0.05 0.05 REMARK 3 6 C 4 177 D 4 177 5895 0.04 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 177 REMARK 3 RESIDUE RANGE : A 201 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): -7.069 -0.895 53.249 REMARK 3 T TENSOR REMARK 3 T11: 0.0257 T22: 0.0486 REMARK 3 T33: 0.2884 T12: 0.0243 REMARK 3 T13: -0.0630 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 14.0519 L22: 0.6001 REMARK 3 L33: 3.1985 L12: 0.2624 REMARK 3 L13: 4.0417 L23: -0.2947 REMARK 3 S TENSOR REMARK 3 S11: -0.1592 S12: 0.0134 S13: -0.0133 REMARK 3 S21: 0.0780 S22: 0.0141 S23: -0.4100 REMARK 3 S31: 0.0344 S32: 0.2891 S33: 0.1451 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 177 REMARK 3 RESIDUE RANGE : B 201 B 203 REMARK 3 ORIGIN FOR THE GROUP (A): 7.061 11.270 31.059 REMARK 3 T TENSOR REMARK 3 T11: 0.0634 T22: 0.0746 REMARK 3 T33: 0.1826 T12: -0.0059 REMARK 3 T13: -0.0528 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 10.9605 L22: 0.5608 REMARK 3 L33: 3.6723 L12: 0.8297 REMARK 3 L13: 3.7173 L23: 0.5498 REMARK 3 S TENSOR REMARK 3 S11: -0.1282 S12: 0.1540 S13: 0.1571 REMARK 3 S21: -0.0770 S22: 0.0542 S23: 0.3035 REMARK 3 S31: -0.0290 S32: -0.3136 S33: 0.0740 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 177 REMARK 3 RESIDUE RANGE : C 201 C 203 REMARK 3 ORIGIN FOR THE GROUP (A): -32.639 0.765 5.906 REMARK 3 T TENSOR REMARK 3 T11: 0.4214 T22: 0.0834 REMARK 3 T33: 0.0925 T12: -0.0681 REMARK 3 T13: -0.0446 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.7916 L22: 0.9428 REMARK 3 L33: 13.9100 L12: -0.5418 REMARK 3 L13: -2.6289 L23: 2.0813 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: 0.3594 S13: -0.0385 REMARK 3 S21: -0.4347 S22: 0.0689 S23: -0.1285 REMARK 3 S31: -0.3945 S32: 0.2107 S33: -0.1688 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 4 D 177 REMARK 3 RESIDUE RANGE : D 201 D 203 REMARK 3 ORIGIN FOR THE GROUP (A): 32.664 23.456 77.400 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.1140 REMARK 3 T33: 0.0653 T12: 0.0550 REMARK 3 T13: -0.0175 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 2.1912 L22: 0.6810 REMARK 3 L33: 11.4993 L12: -0.0935 REMARK 3 L13: -2.7770 L23: 2.0879 REMARK 3 S TENSOR REMARK 3 S11: 0.1747 S12: -0.2076 S13: 0.1067 REMARK 3 S21: 0.1247 S22: 0.0569 S23: 0.0276 REMARK 3 S31: -0.1555 S32: -0.0497 S33: -0.2316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7JH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000250760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11583 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10708 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 86.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.15520 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 2.18400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: DESIGNED MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 4000 100 MM MGCL2 100 MM HEPES REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.23900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 13.91250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.23900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 13.91250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 154 OG1 CG2 REMARK 470 THR B 154 OG1 CG2 REMARK 470 THR C 154 OG1 CG2 REMARK 470 THR D 154 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 135 109.48 -48.95 REMARK 500 LYS A 156 -72.15 -75.18 REMARK 500 LYS B 156 -71.94 -75.57 REMARK 500 LYS C 156 -72.56 -75.21 REMARK 500 LYS D 156 -72.59 -75.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 13 OE1 REMARK 620 2 GLU A 13 OE2 56.1 REMARK 620 3 GLU A 100 OE2 89.3 71.3 REMARK 620 4 GLU A 165 OE1 69.7 125.8 111.4 REMARK 620 5 HIS A 168 ND1 114.5 103.4 148.0 97.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7BU A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 NE2 REMARK 620 2 7BU A 203 NB2 98.8 REMARK 620 3 7BU A 203 NC3 91.7 88.2 REMARK 620 4 7BU A 203 NA1 105.9 88.4 162.4 REMARK 620 5 7BU A 203 ND4 98.9 162.2 89.1 88.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 74 OE2 REMARK 620 2 GLU A 100 OE1 112.5 REMARK 620 3 HIS A 103 ND1 112.0 106.1 REMARK 620 4 GLU A 165 OE2 89.6 108.5 127.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 13 OE1 REMARK 620 2 GLU B 13 OE2 55.7 REMARK 620 3 GLU B 100 OE2 84.7 68.0 REMARK 620 4 GLU B 165 OE1 70.2 125.6 105.2 REMARK 620 5 HIS B 168 ND1 121.8 107.9 146.3 103.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7BU B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 63 NE2 REMARK 620 2 7BU B 203 NB2 99.2 REMARK 620 3 7BU B 203 NC3 95.3 88.6 REMARK 620 4 7BU B 203 NA1 100.8 89.2 163.8 REMARK 620 5 7BU B 203 ND4 97.4 163.4 88.6 89.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 74 OE2 REMARK 620 2 GLU B 100 OE1 99.0 REMARK 620 3 HIS B 103 ND1 110.4 98.2 REMARK 620 4 GLU B 165 OE2 91.6 105.5 144.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 13 OE1 REMARK 620 2 GLU C 13 OE2 64.4 REMARK 620 3 GLU C 100 OE2 96.3 75.9 REMARK 620 4 GLU C 165 OE1 74.5 138.9 110.1 REMARK 620 5 HIS C 168 ND1 121.7 108.9 140.5 91.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7BU C 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 63 NE2 REMARK 620 2 7BU C 203 NB2 102.6 REMARK 620 3 7BU C 203 NC3 98.7 86.3 REMARK 620 4 7BU C 203 NA1 99.7 89.3 161.6 REMARK 620 5 7BU C 203 ND4 96.2 161.1 90.1 88.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 74 OE2 REMARK 620 2 GLU C 100 OE1 117.7 REMARK 620 3 HIS C 103 ND1 116.3 106.6 REMARK 620 4 GLU C 165 OE2 89.2 105.2 121.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 13 OE1 REMARK 620 2 GLU D 13 OE2 60.9 REMARK 620 3 GLU D 100 OE2 96.0 76.8 REMARK 620 4 GLU D 165 OE1 71.4 132.1 112.7 REMARK 620 5 HIS D 168 ND1 114.6 105.0 146.2 91.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7BU D 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 63 NE2 REMARK 620 2 7BU D 203 NB2 99.3 REMARK 620 3 7BU D 203 NC3 93.8 87.9 REMARK 620 4 7BU D 203 NA1 100.9 89.1 165.3 REMARK 620 5 7BU D 203 ND4 95.9 164.8 90.0 89.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 74 OE2 REMARK 620 2 GLU D 100 OE1 117.9 REMARK 620 3 HIS D 103 ND1 105.0 109.7 REMARK 620 4 GLU D 165 OE2 86.3 115.3 120.7 REMARK 620 N 1 2 3 DBREF 7JH6 A 4 177 PDB 7JH6 7JH6 4 177 DBREF 7JH6 B 4 177 PDB 7JH6 7JH6 4 177 DBREF 7JH6 C 4 177 PDB 7JH6 7JH6 4 177 DBREF 7JH6 D 4 177 PDB 7JH6 7JH6 4 177 SEQRES 1 A 174 ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN ALA SEQRES 2 A 174 ILE LYS GLN TYR GLU LYS LEU ARG GLN THR GLY ASP GLU SEQRES 3 A 174 LEU VAL GLN ALA PHE GLN ARG LEU ARG GLU ILE PHE ASP SEQRES 4 A 174 LYS GLY ASP ASP ASP SER LEU GLU GLN VAL LEU GLU GLU SEQRES 5 A 174 ILE GLU GLU LEU ILE GLN LYS HIS ARG GLN LEU ALA SER SEQRES 6 A 174 GLU LEU PRO LYS LEU GLU LEU GLN ALA ILE LYS GLN TYR SEQRES 7 A 174 ARG GLU ALA LEU GLU TYR VAL LYS LEU PRO VAL LEU ALA SEQRES 8 A 174 LYS ILE LEU GLU ASP GLU GLU LYS HIS ILE GLU TRP LEU SEQRES 9 A 174 LYS GLU ALA ALA LYS GLN GLY ASP GLN TRP VAL GLN LEU SEQRES 10 A 174 PHE GLN ARG PHE ARG GLU ALA ILE ASP LYS GLY ASP LYS SEQRES 11 A 174 ASP SER LEU GLU GLN LEU LEU GLU GLU LEU GLU GLN ALA SEQRES 12 A 174 LEU GLN LYS ILE ARG GLU LEU THR GLU LYS THR GLY ARG SEQRES 13 A 174 LYS ILE LEU GLU ASP GLU GLU LYS HIS ILE GLU TRP LEU SEQRES 14 A 174 GLU THR ILE LEU GLY SEQRES 1 B 174 ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN ALA SEQRES 2 B 174 ILE LYS GLN TYR GLU LYS LEU ARG GLN THR GLY ASP GLU SEQRES 3 B 174 LEU VAL GLN ALA PHE GLN ARG LEU ARG GLU ILE PHE ASP SEQRES 4 B 174 LYS GLY ASP ASP ASP SER LEU GLU GLN VAL LEU GLU GLU SEQRES 5 B 174 ILE GLU GLU LEU ILE GLN LYS HIS ARG GLN LEU ALA SER SEQRES 6 B 174 GLU LEU PRO LYS LEU GLU LEU GLN ALA ILE LYS GLN TYR SEQRES 7 B 174 ARG GLU ALA LEU GLU TYR VAL LYS LEU PRO VAL LEU ALA SEQRES 8 B 174 LYS ILE LEU GLU ASP GLU GLU LYS HIS ILE GLU TRP LEU SEQRES 9 B 174 LYS GLU ALA ALA LYS GLN GLY ASP GLN TRP VAL GLN LEU SEQRES 10 B 174 PHE GLN ARG PHE ARG GLU ALA ILE ASP LYS GLY ASP LYS SEQRES 11 B 174 ASP SER LEU GLU GLN LEU LEU GLU GLU LEU GLU GLN ALA SEQRES 12 B 174 LEU GLN LYS ILE ARG GLU LEU THR GLU LYS THR GLY ARG SEQRES 13 B 174 LYS ILE LEU GLU ASP GLU GLU LYS HIS ILE GLU TRP LEU SEQRES 14 B 174 GLU THR ILE LEU GLY SEQRES 1 C 174 ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN ALA SEQRES 2 C 174 ILE LYS GLN TYR GLU LYS LEU ARG GLN THR GLY ASP GLU SEQRES 3 C 174 LEU VAL GLN ALA PHE GLN ARG LEU ARG GLU ILE PHE ASP SEQRES 4 C 174 LYS GLY ASP ASP ASP SER LEU GLU GLN VAL LEU GLU GLU SEQRES 5 C 174 ILE GLU GLU LEU ILE GLN LYS HIS ARG GLN LEU ALA SER SEQRES 6 C 174 GLU LEU PRO LYS LEU GLU LEU GLN ALA ILE LYS GLN TYR SEQRES 7 C 174 ARG GLU ALA LEU GLU TYR VAL LYS LEU PRO VAL LEU ALA SEQRES 8 C 174 LYS ILE LEU GLU ASP GLU GLU LYS HIS ILE GLU TRP LEU SEQRES 9 C 174 LYS GLU ALA ALA LYS GLN GLY ASP GLN TRP VAL GLN LEU SEQRES 10 C 174 PHE GLN ARG PHE ARG GLU ALA ILE ASP LYS GLY ASP LYS SEQRES 11 C 174 ASP SER LEU GLU GLN LEU LEU GLU GLU LEU GLU GLN ALA SEQRES 12 C 174 LEU GLN LYS ILE ARG GLU LEU THR GLU LYS THR GLY ARG SEQRES 13 C 174 LYS ILE LEU GLU ASP GLU GLU LYS HIS ILE GLU TRP LEU SEQRES 14 C 174 GLU THR ILE LEU GLY SEQRES 1 D 174 ASP TYR LEU ARG GLU LEU LEU LYS LEU GLU LEU GLN ALA SEQRES 2 D 174 ILE LYS GLN TYR GLU LYS LEU ARG GLN THR GLY ASP GLU SEQRES 3 D 174 LEU VAL GLN ALA PHE GLN ARG LEU ARG GLU ILE PHE ASP SEQRES 4 D 174 LYS GLY ASP ASP ASP SER LEU GLU GLN VAL LEU GLU GLU SEQRES 5 D 174 ILE GLU GLU LEU ILE GLN LYS HIS ARG GLN LEU ALA SER SEQRES 6 D 174 GLU LEU PRO LYS LEU GLU LEU GLN ALA ILE LYS GLN TYR SEQRES 7 D 174 ARG GLU ALA LEU GLU TYR VAL LYS LEU PRO VAL LEU ALA SEQRES 8 D 174 LYS ILE LEU GLU ASP GLU GLU LYS HIS ILE GLU TRP LEU SEQRES 9 D 174 LYS GLU ALA ALA LYS GLN GLY ASP GLN TRP VAL GLN LEU SEQRES 10 D 174 PHE GLN ARG PHE ARG GLU ALA ILE ASP LYS GLY ASP LYS SEQRES 11 D 174 ASP SER LEU GLU GLN LEU LEU GLU GLU LEU GLU GLN ALA SEQRES 12 D 174 LEU GLN LYS ILE ARG GLU LEU THR GLU LYS THR GLY ARG SEQRES 13 D 174 LYS ILE LEU GLU ASP GLU GLU LYS HIS ILE GLU TRP LEU SEQRES 14 D 174 GLU THR ILE LEU GLY HET ZN A 201 1 HET ZN A 202 1 HET 7BU A 203 41 HET 2PE A 204 28 HET ZN B 201 1 HET ZN B 202 1 HET 7BU B 203 41 HET ZN C 201 1 HET ZN C 202 1 HET 7BU C 203 41 HET ZN D 201 1 HET ZN D 202 1 HET 7BU D 203 41 HETNAM ZN ZINC ION HETNAM 7BU [5,10,15,20-TETRAKIS(TRIFLUOROMETHYL)PORPHYRINATO(2-)- HETNAM 2 7BU KAPPA~4~N~21~,N~22~,N~23~,N~24~]ZINC HETNAM 2PE NONAETHYLENE GLYCOL HETSYN 7BU [5,10,15,20-TETRAKIS(TRIFLUOROMETHYL) HETSYN 2 7BU PORPHINATO]ZINC(II) FORMUL 5 ZN 8(ZN 2+) FORMUL 7 7BU 4(C24 H8 F12 N4 ZN) FORMUL 8 2PE C18 H38 O10 FORMUL 18 HOH *(H2 O) HELIX 1 AA1 TYR A 5 GLY A 44 1 40 HELIX 2 AA2 ASP A 45 VAL A 88 1 44 HELIX 3 AA3 LEU A 90 LYS A 130 1 41 HELIX 4 AA4 SER A 135 LEU A 176 1 42 HELIX 5 AA5 TYR B 5 GLY B 44 1 40 HELIX 6 AA6 ASP B 45 VAL B 88 1 44 HELIX 7 AA7 LEU B 90 ALA B 127 1 38 HELIX 8 AA8 ASP B 132 LEU B 176 1 45 HELIX 9 AA9 TYR C 5 GLY C 44 1 40 HELIX 10 AB1 ASP C 45 VAL C 88 1 44 HELIX 11 AB2 LEU C 90 ALA C 127 1 38 HELIX 12 AB3 ASP C 132 LEU C 176 1 45 HELIX 13 AB4 TYR D 5 GLY D 44 1 40 HELIX 14 AB5 ASP D 45 VAL D 88 1 44 HELIX 15 AB6 LEU D 90 ALA D 127 1 38 HELIX 16 AB7 ASP D 132 LEU D 176 1 45 LINK OE1 GLU A 13 ZN ZN A 201 1555 1555 2.21 LINK OE2 GLU A 13 ZN ZN A 201 1555 1555 2.44 LINK NE2 HIS A 63 ZN 7BU A 203 1555 1555 2.10 LINK OE2 GLU A 74 ZN ZN A 202 1555 1555 2.06 LINK OE2 GLU A 100 ZN ZN A 201 1555 1555 2.44 LINK OE1 GLU A 100 ZN ZN A 202 1555 1555 2.02 LINK ND1 HIS A 103 ZN ZN A 202 1555 1555 2.07 LINK OE1 GLU A 165 ZN ZN A 201 1555 1555 1.96 LINK OE2 GLU A 165 ZN ZN A 202 1555 1555 2.13 LINK ND1 HIS A 168 ZN ZN A 201 1555 1555 2.13 LINK OE1 GLU B 13 ZN ZN B 201 1555 1555 2.21 LINK OE2 GLU B 13 ZN ZN B 201 1555 1555 2.46 LINK NE2 HIS B 63 ZN 7BU B 203 1555 1555 2.08 LINK OE2 GLU B 74 ZN ZN B 202 1555 1555 2.17 LINK OE2 GLU B 100 ZN ZN B 201 1555 1555 2.62 LINK OE1 GLU B 100 ZN ZN B 202 1555 1555 2.29 LINK ND1 HIS B 103 ZN ZN B 202 1555 1555 2.02 LINK OE1 GLU B 165 ZN ZN B 201 1555 1555 1.94 LINK OE2 GLU B 165 ZN ZN B 202 1555 1555 1.94 LINK ND1 HIS B 168 ZN ZN B 201 1555 1555 1.97 LINK OE1 GLU C 13 ZN ZN C 201 1555 1555 1.94 LINK OE2 GLU C 13 ZN ZN C 201 1555 1555 2.17 LINK NE2 HIS C 63 ZN 7BU C 203 1555 1555 2.14 LINK OE2 GLU C 74 ZN ZN C 202 1555 1555 1.96 LINK OE2 GLU C 100 ZN ZN C 201 1555 1555 2.43 LINK OE1 GLU C 100 ZN ZN C 202 1555 1555 2.00 LINK ND1 HIS C 103 ZN ZN C 202 1555 1555 2.08 LINK OE1 GLU C 165 ZN ZN C 201 1555 1555 2.02 LINK OE2 GLU C 165 ZN ZN C 202 1555 1555 2.23 LINK ND1 HIS C 168 ZN ZN C 201 1555 1555 2.25 LINK OE1 GLU D 13 ZN ZN D 201 1555 1555 2.08 LINK OE2 GLU D 13 ZN ZN D 201 1555 1555 2.25 LINK NE2 HIS D 63 ZN 7BU D 203 1555 1555 2.09 LINK OE2 GLU D 74 ZN ZN D 202 1555 1555 2.15 LINK OE2 GLU D 100 ZN ZN D 201 1555 1555 2.33 LINK OE1 GLU D 100 ZN ZN D 202 1555 1555 1.82 LINK ND1 HIS D 103 ZN ZN D 202 1555 1555 2.17 LINK OE1 GLU D 165 ZN ZN D 201 1555 1555 2.03 LINK OE2 GLU D 165 ZN ZN D 202 1555 1555 2.16 LINK ND1 HIS D 168 ZN ZN D 201 1555 1555 2.26 CRYST1 172.478 27.825 188.494 90.00 117.16 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005798 0.000000 0.002975 0.00000 SCALE2 0.000000 0.035939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005963 0.00000