HEADER VIRAL PROTEIN 20-JUL-20 7JHE TITLE ROOM TEMPERATURE STRUCTURE OF SARS-COV-2 NSP10/NSP16 METHYLTRANSFERASE TITLE 2 IN A COMPLEX WITH 2'-O-METHYLATED M7GPPPA CAP-1 AND SAH DETERMINED BY TITLE 3 FIXED-TARGET SERIAL CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2'-O-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 16; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NON-STRUCTURAL PROTEIN 10; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VARIANT: MAGIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMCSG53; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 15 2; SOURCE 16 ORGANISM_COMMON: 2019-NCOV; SOURCE 17 ORGANISM_TAXID: 2697049; SOURCE 18 GENE: REP, 1A-1B; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 22 EXPRESSION_SYSTEM_VARIANT: MAGIC KEYWDS SARS COV-2, SERIAL CRYSTALLOGRAPHY, METHYLTRANSFERASE, M7GPPPA, CAP- KEYWDS 2 1, S-ADENOSYLHOMOCYSTEINE, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WILAMOWSKI,D.A.SHERRELL,G.MINASOV,Y.KIM,L.SHUVALOVA,A.LAVENS, AUTHOR 2 R.CHARD,M.ROSAS-LEMUS,N.MALTSEVA,R.JEDRZEJCZAK,K.MICHALSKA, AUTHOR 3 K.J.F.SATCHELL,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 4 INFECTIOUS DISEASES (CSGID) REVDAT 3 18-OCT-23 7JHE 1 REMARK REVDAT 2 28-JUL-21 7JHE 1 JRNL REVDAT 1 26-AUG-20 7JHE 0 JRNL AUTH M.WILAMOWSKI,D.A.SHERRELL,G.MINASOV,Y.KIM,L.SHUVALOVA, JRNL AUTH 2 A.LAVENS,R.CHARD,N.MALTSEVA,R.JEDRZEJCZAK,M.ROSAS-LEMUS, JRNL AUTH 3 N.SAINT,I.T.FOSTER,K.MICHALSKA,K.J.F.SATCHELL,A.JOACHIMIAK JRNL TITL 2'-O METHYLATION OF RNA CAP IN SARS-COV-2 CAPTURED BY SERIAL JRNL TITL 2 CRYSTALLOGRAPHY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33972410 JRNL DOI 10.1073/PNAS.2100170118 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2962 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3193 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.256 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.956 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3410 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3036 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4651 ; 1.353 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7077 ; 0.356 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 3.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;28.016 ;24.014 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 553 ;10.373 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 9.598 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3752 ; 0.053 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 664 ; 0.050 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7JHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : SAGITTALLY FOCUSING MONO AND REMARK 200 VERTICALLY FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 49.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 42.94 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.28 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6WQ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 4.0 MG/ML (NSP10/NSP16 1:1), REMARK 280 0.15 M NACL, 0.01 M TRIS-HCL, 2 MM SAM, 1 MM TCEP, 5% GLYCEROL, REMARK 280 PH 7.5. PRECIPITATION BUFFER: 0.1 M MES PH 6.5, 0.9 M NAF. BATCH REMARK 280 CRYSTALLIZATION: 100 UL OF PROTEIN MIXED WITH 100 UL OF REMARK 280 PRECIPITATION BUFFER IN 500 UL POLYPROPYLENE TUBE. CRYSTALS WERE REMARK 280 SOAKED WITH M7GPPPA (0.5 MM) FOR 10 MINUTES BEFORE DATA REMARK 280 COLLECTION., BATCH MODE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.59900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.19800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.19800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.59900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 ASN B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 ASN B 10 REMARK 465 SER B 11 REMARK 465 THR B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 SER B 15 REMARK 465 PHE B 16 REMARK 465 CYS B 17 REMARK 465 LEU B 133 REMARK 465 ARG B 134 REMARK 465 GLU B 135 REMARK 465 PRO B 136 REMARK 465 MET B 137 REMARK 465 LEU B 138 REMARK 465 GLN B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 142 151.67 -48.35 REMARK 500 GLU A 147 -115.40 -111.28 REMARK 500 ASN A 210 90.59 69.94 REMARK 500 SER A 261 67.23 -112.40 REMARK 500 GLU A 264 3.04 -62.60 REMARK 500 ASN A 297 -165.18 -116.35 REMARK 500 PHE B 19 88.46 -65.76 REMARK 500 THR B 49 33.12 -141.15 REMARK 500 PRO B 84 86.60 -64.68 REMARK 500 SER B 129 52.71 -117.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 74 SG REMARK 620 2 CYS B 77 SG 104.8 REMARK 620 3 HIS B 83 NE2 97.7 101.7 REMARK 620 4 CYS B 90 SG 123.4 118.7 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B4402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 117 SG REMARK 620 2 CYS B 120 SG 103.5 REMARK 620 3 CYS B 128 SG 97.9 111.0 REMARK 620 4 CYS B 130 SG 123.5 103.7 116.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6XKM RELATED DB: PDB REMARK 900 RELATED ID: 6W4H RELATED DB: PDB REMARK 900 RELATED ID: 6WJT RELATED DB: PDB REMARK 900 RELATED ID: 6WKQ RELATED DB: PDB REMARK 900 RELATED ID: 6WQ3 RELATED DB: PDB REMARK 900 RELATED ID: 6WVN RELATED DB: PDB REMARK 900 RELATED ID: 6WRZ RELATED DB: PDB DBREF 7JHE A 1 298 UNP P0DTD1 R1AB_SARS2 6799 7096 DBREF 7JHE B 1 139 UNP P0DTD1 R1AB_SARS2 4254 4392 SEQADV 7JHE SER A -2 UNP P0DTD1 EXPRESSION TAG SEQADV 7JHE ASN A -1 UNP P0DTD1 EXPRESSION TAG SEQADV 7JHE ALA A 0 UNP P0DTD1 EXPRESSION TAG SEQADV 7JHE SER B -2 UNP P0DTD1 EXPRESSION TAG SEQADV 7JHE ASN B -1 UNP P0DTD1 EXPRESSION TAG SEQADV 7JHE ALA B 0 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 301 SER ASN ALA SER SER GLN ALA TRP GLN PRO GLY VAL ALA SEQRES 2 A 301 MET PRO ASN LEU TYR LYS MET GLN ARG MET LEU LEU GLU SEQRES 3 A 301 LYS CYS ASP LEU GLN ASN TYR GLY ASP SER ALA THR LEU SEQRES 4 A 301 PRO LYS GLY ILE MET MET ASN VAL ALA LYS TYR THR GLN SEQRES 5 A 301 LEU CYS GLN TYR LEU ASN THR LEU THR LEU ALA VAL PRO SEQRES 6 A 301 TYR ASN MET ARG VAL ILE HIS PHE GLY ALA GLY SER ASP SEQRES 7 A 301 LYS GLY VAL ALA PRO GLY THR ALA VAL LEU ARG GLN TRP SEQRES 8 A 301 LEU PRO THR GLY THR LEU LEU VAL ASP SER ASP LEU ASN SEQRES 9 A 301 ASP PHE VAL SER ASP ALA ASP SER THR LEU ILE GLY ASP SEQRES 10 A 301 CYS ALA THR VAL HIS THR ALA ASN LYS TRP ASP LEU ILE SEQRES 11 A 301 ILE SER ASP MET TYR ASP PRO LYS THR LYS ASN VAL THR SEQRES 12 A 301 LYS GLU ASN ASP SER LYS GLU GLY PHE PHE THR TYR ILE SEQRES 13 A 301 CYS GLY PHE ILE GLN GLN LYS LEU ALA LEU GLY GLY SER SEQRES 14 A 301 VAL ALA ILE LYS ILE THR GLU HIS SER TRP ASN ALA ASP SEQRES 15 A 301 LEU TYR LYS LEU MET GLY HIS PHE ALA TRP TRP THR ALA SEQRES 16 A 301 PHE VAL THR ASN VAL ASN ALA SER SER SER GLU ALA PHE SEQRES 17 A 301 LEU ILE GLY CYS ASN TYR LEU GLY LYS PRO ARG GLU GLN SEQRES 18 A 301 ILE ASP GLY TYR VAL MET HIS ALA ASN TYR ILE PHE TRP SEQRES 19 A 301 ARG ASN THR ASN PRO ILE GLN LEU SER SER TYR SER LEU SEQRES 20 A 301 PHE ASP MET SER LYS PHE PRO LEU LYS LEU ARG GLY THR SEQRES 21 A 301 ALA VAL MET SER LEU LYS GLU GLY GLN ILE ASN ASP MET SEQRES 22 A 301 ILE LEU SER LEU LEU SER LYS GLY ARG LEU ILE ILE ARG SEQRES 23 A 301 GLU ASN ASN ARG VAL VAL ILE SER SER ASP VAL LEU VAL SEQRES 24 A 301 ASN ASN SEQRES 1 B 142 SER ASN ALA ALA GLY ASN ALA THR GLU VAL PRO ALA ASN SEQRES 2 B 142 SER THR VAL LEU SER PHE CYS ALA PHE ALA VAL ASP ALA SEQRES 3 B 142 ALA LYS ALA TYR LYS ASP TYR LEU ALA SER GLY GLY GLN SEQRES 4 B 142 PRO ILE THR ASN CYS VAL LYS MET LEU CYS THR HIS THR SEQRES 5 B 142 GLY THR GLY GLN ALA ILE THR VAL THR PRO GLU ALA ASN SEQRES 6 B 142 MET ASP GLN GLU SER PHE GLY GLY ALA SER CYS CYS LEU SEQRES 7 B 142 TYR CYS ARG CYS HIS ILE ASP HIS PRO ASN PRO LYS GLY SEQRES 8 B 142 PHE CYS ASP LEU LYS GLY LYS TYR VAL GLN ILE PRO THR SEQRES 9 B 142 THR CYS ALA ASN ASP PRO VAL GLY PHE THR LEU LYS ASN SEQRES 10 B 142 THR VAL CYS THR VAL CYS GLY MET TRP LYS GLY TYR GLY SEQRES 11 B 142 CYS SER CYS ASP GLN LEU ARG GLU PRO MET LEU GLN HET CL A7101 1 HET SAH A7102 26 HET V9G A7103 52 HET MGP A7104 33 HET ZN B4401 1 HET ZN B4402 1 HETNAM CL CHLORIDE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM V9G 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)- HETNAM 2 V9G ADENOSINE HETNAM MGP 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE HETNAM ZN ZINC ION FORMUL 3 CL CL 1- FORMUL 4 SAH C14 H20 N6 O5 S FORMUL 5 V9G C22 H32 N10 O17 P3 FORMUL 6 MGP C11 H19 N5 O14 P3 1+ FORMUL 7 ZN 2(ZN 2+) FORMUL 9 HOH *158(H2 O) HELIX 1 AA1 SER A 1 GLN A 6 5 6 HELIX 2 AA2 PRO A 12 MET A 17 1 6 HELIX 3 AA3 MET A 41 ASN A 55 1 15 HELIX 4 AA4 ALA A 79 LEU A 89 1 11 HELIX 5 AA5 ASP A 114 ALA A 116 5 3 HELIX 6 AA6 ASP A 133 ASN A 138 5 6 HELIX 7 AA7 GLY A 148 LYS A 160 1 13 HELIX 8 AA8 ASN A 177 GLY A 185 1 9 HELIX 9 AA9 ASP A 220 ASN A 235 1 16 HELIX 10 AB1 SER A 241 ASP A 246 5 6 HELIX 11 AB2 ASN A 268 SER A 276 1 9 HELIX 12 AB3 ASP B 22 ALA B 32 1 11 HELIX 13 AB4 GLY B 70 CYS B 74 1 5 HELIX 14 AB5 CYS B 74 CYS B 79 1 6 HELIX 15 AB6 ASN B 85 PHE B 89 5 5 HELIX 16 AB7 THR B 102 ALA B 104 5 3 HELIX 17 AB8 ASP B 106 ASN B 114 1 9 SHEET 1 AA1 8 GLY A 8 ALA A 10 0 SHEET 2 AA1 8 PHE A 187 THR A 195 -1 O VAL A 194 N VAL A 9 SHEET 3 AA1 8 ALA A 204 TYR A 211 -1 O CYS A 209 N TRP A 189 SHEET 4 AA1 8 LEU A 161 ILE A 171 -1 N ILE A 169 O LEU A 206 SHEET 5 AA1 8 TRP A 124 SER A 129 1 N TRP A 124 O ALA A 162 SHEET 6 AA1 8 ARG A 66 PHE A 70 1 N ARG A 66 O ASP A 125 SHEET 7 AA1 8 LEU A 94 ASP A 99 1 O LEU A 94 N VAL A 67 SHEET 8 AA1 8 SER A 109 ILE A 112 1 O SER A 109 N ASP A 97 SHEET 1 AA2 2 VAL A 118 THR A 120 0 SHEET 2 AA2 2 ILE A 290 SER A 292 -1 O SER A 291 N HIS A 119 SHEET 1 AA3 2 ALA A 258 MET A 260 0 SHEET 2 AA3 2 LEU A 280 ILE A 282 1 O ILE A 281 N MET A 260 SHEET 1 AA4 3 ILE B 55 THR B 56 0 SHEET 2 AA4 3 TYR B 96 PRO B 100 -1 O TYR B 96 N THR B 56 SHEET 3 AA4 3 GLN B 65 GLY B 69 -1 N GLU B 66 O ILE B 99 SHEET 1 AA5 2 THR B 115 VAL B 116 0 SHEET 2 AA5 2 TRP B 123 LYS B 124 -1 O LYS B 124 N THR B 115 LINK SG CYS B 74 ZN ZN B4401 1555 1555 2.30 LINK SG CYS B 77 ZN ZN B4401 1555 1555 2.33 LINK NE2 HIS B 83 ZN ZN B4401 1555 1555 1.99 LINK SG CYS B 90 ZN ZN B4401 1555 1555 2.30 LINK SG CYS B 117 ZN ZN B4402 1555 1555 2.35 LINK SG CYS B 120 ZN ZN B4402 1555 1555 2.34 LINK SG CYS B 128 ZN ZN B4402 1555 1555 2.35 LINK SG CYS B 130 ZN ZN B4402 1555 1555 2.35 CRYST1 170.859 170.859 52.797 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005853 0.003379 0.000000 0.00000 SCALE2 0.000000 0.006758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018940 0.00000