HEADER TRANSFERASE 21-JUL-20 7JHO TITLE STRUCTURE OF HUMAN BETA 1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 2 WITH UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLLACTOSAMINIDE BETA-1,3-N- COMPND 3 ACETYLGLUCOSAMINYLTRANSFERASE 2; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 1,BETA3GN-T1,3- COMPND 6 GALACTOSYLTRANSFERASE 7,B3GAL-T7,BETA-3-GX-T7,UDP-GAL:BETA-GLCNAC COMPND 7 BETA-1,UDP-GLCNAC:BETAGAL BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 2, COMPND 8 BETA3GN-T2,UDP-GALACTOSE:BETA-N-ACETYLGLUCOSAMINE BETA-1; COMPND 9 EC: 2.4.1.149; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: B3GNT2, B3GALT7, B3GNT1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS GLYCOSYLTRANSFERASE, POLY-N-ACETYL-LACTOSAMINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HAO,X.HUANG REVDAT 3 18-OCT-23 7JHO 1 REMARK REVDAT 2 14-JUL-21 7JHO 1 JRNL REVDAT 1 18-NOV-20 7JHO 0 JRNL AUTH Y.HAO,A.CREQUER-GRANDHOMME,N.JAVIER,A.SINGH,H.CHEN, JRNL AUTH 2 P.MANZANILLO,M.C.LO,X.HUANG JRNL TITL STRUCTURES AND MECHANISM OF HUMAN GLYCOSYLTRANSFERASE BETA JRNL TITL 2 1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 2 (B3GNT2), AN IMPORTANT JRNL TITL 3 PLAYER IN IMMUNE HOMEOSTASIS. JRNL REF J.BIOL.CHEM. V. 296 00042 2020 JRNL REFN ESSN 1083-351X JRNL PMID 33158990 JRNL DOI 10.1074/JBC.RA120.015306 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 64894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2196 - 5.2446 0.99 2917 164 0.1798 0.2251 REMARK 3 2 5.2446 - 4.1667 1.00 2902 141 0.1365 0.1718 REMARK 3 3 4.1667 - 3.6411 1.00 2869 152 0.1323 0.1659 REMARK 3 4 3.6411 - 3.3087 1.00 2892 137 0.1504 0.1910 REMARK 3 5 3.3087 - 3.0718 1.00 2849 160 0.1590 0.1956 REMARK 3 6 3.0718 - 2.8909 1.00 2870 155 0.1626 0.2074 REMARK 3 7 2.8909 - 2.7462 1.00 2872 127 0.1609 0.2164 REMARK 3 8 2.7462 - 2.6267 1.00 2861 143 0.1617 0.2197 REMARK 3 9 2.6267 - 2.5257 1.00 2886 139 0.1593 0.2186 REMARK 3 10 2.5257 - 2.4386 1.00 2864 148 0.1661 0.2271 REMARK 3 11 2.4386 - 2.3624 1.00 2838 142 0.1709 0.2315 REMARK 3 12 2.3624 - 2.2949 1.00 2862 156 0.1655 0.1929 REMARK 3 13 2.2949 - 2.2345 1.00 2786 168 0.1617 0.2254 REMARK 3 14 2.2345 - 2.1800 1.00 2848 161 0.1669 0.2307 REMARK 3 15 2.1800 - 2.1304 1.00 2851 137 0.1779 0.2169 REMARK 3 16 2.1304 - 2.0851 1.00 2868 151 0.1833 0.2172 REMARK 3 17 2.0851 - 2.0434 1.00 2876 147 0.1878 0.2502 REMARK 3 18 2.0434 - 2.0048 0.99 2803 147 0.1971 0.2514 REMARK 3 19 2.0048 - 1.9691 0.95 2654 144 0.2144 0.2754 REMARK 3 20 1.9691 - 1.9357 0.84 2399 146 0.2111 0.2856 REMARK 3 21 1.9357 - 1.9045 0.75 2137 97 0.2311 0.2471 REMARK 3 22 1.9045 - 1.8752 0.59 1658 82 0.2336 0.2537 REMARK 3 23 1.8752 - 1.8500 0.46 1310 78 0.2428 0.2783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6131 REMARK 3 ANGLE : 0.901 8380 REMARK 3 CHIRALITY : 0.054 943 REMARK 3 PLANARITY : 0.005 1040 REMARK 3 DIHEDRAL : 12.419 3676 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 87 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 1.02200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JHI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG1500, 20% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.82550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.25550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.82550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.25550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 HIS A 36 REMARK 465 GLU A 37 REMARK 465 ASN A 38 REMARK 465 LEU A 39 REMARK 465 TYR A 40 REMARK 465 PHE A 41 REMARK 465 GLN A 42 REMARK 465 GLY A 43 REMARK 465 SER A 44 REMARK 465 LYS A 45 REMARK 465 GLU A 46 REMARK 465 LYS A 47 REMARK 465 PHE A 48 REMARK 465 TRP A 49 REMARK 465 LYS A 50 REMARK 465 ILE A 51 REMARK 465 SER A 52 REMARK 465 THR A 53 REMARK 465 PRO A 54 REMARK 465 LEU A 77 REMARK 465 THR A 78 REMARK 465 ASN A 79 REMARK 465 GLN A 80 REMARK 465 THR A 81 REMARK 465 GLY A 82 REMARK 465 GLU A 83 REMARK 465 ALA A 84 REMARK 465 GLY A 85 REMARK 465 ARG A 86 REMARK 465 LEU A 87 REMARK 465 SER A 88 REMARK 465 MET B 28 REMARK 465 HIS B 29 REMARK 465 HIS B 30 REMARK 465 HIS B 31 REMARK 465 HIS B 32 REMARK 465 HIS B 33 REMARK 465 HIS B 34 REMARK 465 HIS B 35 REMARK 465 HIS B 36 REMARK 465 GLU B 37 REMARK 465 ASN B 38 REMARK 465 LEU B 39 REMARK 465 TYR B 40 REMARK 465 PHE B 41 REMARK 465 GLN B 42 REMARK 465 GLY B 43 REMARK 465 SER B 44 REMARK 465 LYS B 45 REMARK 465 GLU B 46 REMARK 465 LYS B 47 REMARK 465 PHE B 48 REMARK 465 TRP B 49 REMARK 465 LYS B 50 REMARK 465 ILE B 51 REMARK 465 SER B 52 REMARK 465 THR B 53 REMARK 465 PRO B 54 REMARK 465 THR B 78 REMARK 465 ASN B 79 REMARK 465 GLN B 80 REMARK 465 THR B 81 REMARK 465 GLY B 82 REMARK 465 GLU B 83 REMARK 465 ALA B 84 REMARK 465 GLY B 85 REMARK 465 ARG B 86 REMARK 465 LEU B 87 REMARK 465 SER B 88 REMARK 465 ALA B 171 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 710 O HOH B 793 2.02 REMARK 500 O HOH A 502 O HOH A 610 2.07 REMARK 500 O HOH A 578 O HOH A 641 2.08 REMARK 500 O HOH A 660 O HOH A 806 2.10 REMARK 500 O HOH B 615 O HOH B 685 2.11 REMARK 500 O HOH B 527 O HOH B 698 2.11 REMARK 500 O HOH A 572 O HOH A 738 2.14 REMARK 500 O HOH B 527 O HOH B 529 2.14 REMARK 500 O HOH A 574 O HOH A 641 2.14 REMARK 500 O HOH A 765 O HOH A 800 2.15 REMARK 500 O HOH B 796 O HOH B 798 2.15 REMARK 500 O HOH A 734 O HOH A 805 2.16 REMARK 500 OE1 GLU B 293 O HOH B 501 2.16 REMARK 500 O HOH B 529 O HOH B 697 2.19 REMARK 500 O HOH A 564 O HOH A 719 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 730 O HOH B 722 4544 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 164 -109.71 -120.11 REMARK 500 ASN A 170 27.26 -150.25 REMARK 500 CYS A 235 47.72 -142.69 REMARK 500 ASP A 357 -176.55 74.64 REMARK 500 SER B 164 -107.15 -116.64 REMARK 500 ASP B 207 21.38 -140.81 REMARK 500 CYS B 235 48.84 -144.00 REMARK 500 ASP B 357 -168.65 74.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 831 DISTANCE = 6.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 247 OD2 REMARK 620 2 UDP A 401 O2A 91.6 REMARK 620 3 UDP A 401 O2B 165.9 74.6 REMARK 620 4 HOH A 506 O 99.1 89.3 78.2 REMARK 620 5 HOH A 731 O 98.0 88.8 84.8 162.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 247 OD2 REMARK 620 2 UDP B 402 O2A 89.2 REMARK 620 3 UDP B 402 O2B 169.8 80.8 REMARK 620 4 HOH B 508 O 93.5 94.3 85.9 REMARK 620 5 HOH B 700 O 94.9 88.4 86.3 171.2 REMARK 620 N 1 2 3 4 DBREF 7JHO A 45 397 UNP Q9NY97 B3GN2_HUMAN 45 397 DBREF 7JHO B 45 397 UNP Q9NY97 B3GN2_HUMAN 45 397 SEQADV 7JHO MET A 28 UNP Q9NY97 INITIATING METHIONINE SEQADV 7JHO HIS A 29 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS A 30 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS A 31 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS A 32 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS A 33 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS A 34 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS A 35 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS A 36 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO GLU A 37 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO ASN A 38 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO LEU A 39 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO TYR A 40 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO PHE A 41 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO GLN A 42 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO GLY A 43 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO SER A 44 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO MET B 28 UNP Q9NY97 INITIATING METHIONINE SEQADV 7JHO HIS B 29 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS B 30 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS B 31 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS B 32 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS B 33 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS B 34 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS B 35 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO HIS B 36 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO GLU B 37 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO ASN B 38 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO LEU B 39 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO TYR B 40 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO PHE B 41 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO GLN B 42 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO GLY B 43 UNP Q9NY97 EXPRESSION TAG SEQADV 7JHO SER B 44 UNP Q9NY97 EXPRESSION TAG SEQRES 1 A 370 MET HIS HIS HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR SEQRES 2 A 370 PHE GLN GLY SER LYS GLU LYS PHE TRP LYS ILE SER THR SEQRES 3 A 370 PRO PRO GLU ALA TYR TRP ASN ARG GLU GLN GLU LYS LEU SEQRES 4 A 370 ASN ARG GLN TYR ASN PRO ILE LEU SER MET LEU THR ASN SEQRES 5 A 370 GLN THR GLY GLU ALA GLY ARG LEU SER ASN ILE SER HIS SEQRES 6 A 370 LEU ASN TYR CYS GLU PRO ASP LEU ARG VAL THR SER VAL SEQRES 7 A 370 VAL THR GLY PHE ASN ASN LEU PRO ASP ARG PHE LYS ASP SEQRES 8 A 370 PHE LEU LEU TYR LEU ARG CYS ARG ASN TYR SER LEU LEU SEQRES 9 A 370 ILE ASP GLN PRO ASP LYS CYS ALA LYS LYS PRO PHE LEU SEQRES 10 A 370 LEU LEU ALA ILE LYS SER LEU THR PRO HIS PHE ALA ARG SEQRES 11 A 370 ARG GLN ALA ILE ARG GLU SER TRP GLY GLN GLU SER ASN SEQRES 12 A 370 ALA GLY ASN GLN THR VAL VAL ARG VAL PHE LEU LEU GLY SEQRES 13 A 370 GLN THR PRO PRO GLU ASP ASN HIS PRO ASP LEU SER ASP SEQRES 14 A 370 MET LEU LYS PHE GLU SER GLU LYS HIS GLN ASP ILE LEU SEQRES 15 A 370 MET TRP ASN TYR ARG ASP THR PHE PHE ASN LEU SER LEU SEQRES 16 A 370 LYS GLU VAL LEU PHE LEU ARG TRP VAL SER THR SER CYS SEQRES 17 A 370 PRO ASP THR GLU PHE VAL PHE LYS GLY ASP ASP ASP VAL SEQRES 18 A 370 PHE VAL ASN THR HIS HIS ILE LEU ASN TYR LEU ASN SER SEQRES 19 A 370 LEU SER LYS THR LYS ALA LYS ASP LEU PHE ILE GLY ASP SEQRES 20 A 370 VAL ILE HIS ASN ALA GLY PRO HIS ARG ASP LYS LYS LEU SEQRES 21 A 370 LYS TYR TYR ILE PRO GLU VAL VAL TYR SER GLY LEU TYR SEQRES 22 A 370 PRO PRO TYR ALA GLY GLY GLY GLY PHE LEU TYR SER GLY SEQRES 23 A 370 HIS LEU ALA LEU ARG LEU TYR HIS ILE THR ASP GLN VAL SEQRES 24 A 370 HIS LEU TYR PRO ILE ASP ASP VAL TYR THR GLY MET CYS SEQRES 25 A 370 LEU GLN LYS LEU GLY LEU VAL PRO GLU LYS HIS LYS GLY SEQRES 26 A 370 PHE ARG THR PHE ASP ILE GLU GLU LYS ASN LYS ASN ASN SEQRES 27 A 370 ILE CYS SER TYR VAL ASP LEU MET LEU VAL HIS SER ARG SEQRES 28 A 370 LYS PRO GLN GLU MET ILE ASP ILE TRP SER GLN LEU GLN SEQRES 29 A 370 SER ALA HIS LEU LYS CYS SEQRES 1 B 370 MET HIS HIS HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR SEQRES 2 B 370 PHE GLN GLY SER LYS GLU LYS PHE TRP LYS ILE SER THR SEQRES 3 B 370 PRO PRO GLU ALA TYR TRP ASN ARG GLU GLN GLU LYS LEU SEQRES 4 B 370 ASN ARG GLN TYR ASN PRO ILE LEU SER MET LEU THR ASN SEQRES 5 B 370 GLN THR GLY GLU ALA GLY ARG LEU SER ASN ILE SER HIS SEQRES 6 B 370 LEU ASN TYR CYS GLU PRO ASP LEU ARG VAL THR SER VAL SEQRES 7 B 370 VAL THR GLY PHE ASN ASN LEU PRO ASP ARG PHE LYS ASP SEQRES 8 B 370 PHE LEU LEU TYR LEU ARG CYS ARG ASN TYR SER LEU LEU SEQRES 9 B 370 ILE ASP GLN PRO ASP LYS CYS ALA LYS LYS PRO PHE LEU SEQRES 10 B 370 LEU LEU ALA ILE LYS SER LEU THR PRO HIS PHE ALA ARG SEQRES 11 B 370 ARG GLN ALA ILE ARG GLU SER TRP GLY GLN GLU SER ASN SEQRES 12 B 370 ALA GLY ASN GLN THR VAL VAL ARG VAL PHE LEU LEU GLY SEQRES 13 B 370 GLN THR PRO PRO GLU ASP ASN HIS PRO ASP LEU SER ASP SEQRES 14 B 370 MET LEU LYS PHE GLU SER GLU LYS HIS GLN ASP ILE LEU SEQRES 15 B 370 MET TRP ASN TYR ARG ASP THR PHE PHE ASN LEU SER LEU SEQRES 16 B 370 LYS GLU VAL LEU PHE LEU ARG TRP VAL SER THR SER CYS SEQRES 17 B 370 PRO ASP THR GLU PHE VAL PHE LYS GLY ASP ASP ASP VAL SEQRES 18 B 370 PHE VAL ASN THR HIS HIS ILE LEU ASN TYR LEU ASN SER SEQRES 19 B 370 LEU SER LYS THR LYS ALA LYS ASP LEU PHE ILE GLY ASP SEQRES 20 B 370 VAL ILE HIS ASN ALA GLY PRO HIS ARG ASP LYS LYS LEU SEQRES 21 B 370 LYS TYR TYR ILE PRO GLU VAL VAL TYR SER GLY LEU TYR SEQRES 22 B 370 PRO PRO TYR ALA GLY GLY GLY GLY PHE LEU TYR SER GLY SEQRES 23 B 370 HIS LEU ALA LEU ARG LEU TYR HIS ILE THR ASP GLN VAL SEQRES 24 B 370 HIS LEU TYR PRO ILE ASP ASP VAL TYR THR GLY MET CYS SEQRES 25 B 370 LEU GLN LYS LEU GLY LEU VAL PRO GLU LYS HIS LYS GLY SEQRES 26 B 370 PHE ARG THR PHE ASP ILE GLU GLU LYS ASN LYS ASN ASN SEQRES 27 B 370 ILE CYS SER TYR VAL ASP LEU MET LEU VAL HIS SER ARG SEQRES 28 B 370 LYS PRO GLN GLU MET ILE ASP ILE TRP SER GLN LEU GLN SEQRES 29 B 370 SER ALA HIS LEU LYS CYS HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET FUC E 6 10 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET MAN F 5 11 HET UDP A 401 25 HET MG A 402 1 HET GOL A 403 6 HET GOL A 404 6 HET CL A 405 1 HET NAG B 401 14 HET UDP B 402 25 HET MG B 403 1 HET GOL B 404 6 HET GOL B 405 6 HET CL B 406 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 4 BMA 3(C6 H12 O6) FORMUL 4 MAN 6(C6 H12 O6) FORMUL 5 FUC C6 H12 O5 FORMUL 7 UDP 2(C9 H14 N2 O12 P2) FORMUL 8 MG 2(MG 2+) FORMUL 9 GOL 4(C3 H8 O3) FORMUL 11 CL 2(CL 1-) FORMUL 18 HOH *636(H2 O) HELIX 1 AA1 ALA A 57 ASN A 71 1 15 HELIX 2 AA2 PRO A 72 SER A 75 5 4 HELIX 3 AA3 ARG A 101 VAL A 106 1 6 HELIX 4 AA4 GLY A 108 LEU A 112 5 5 HELIX 5 AA5 PRO A 113 TYR A 122 1 10 HELIX 6 AA6 HIS A 154 SER A 164 1 11 HELIX 7 AA7 ASN A 170 GLN A 174 5 5 HELIX 8 AA8 PRO A 186 ASN A 190 5 5 HELIX 9 AA9 LEU A 194 GLN A 206 1 13 HELIX 10 AB1 THR A 216 PHE A 218 5 3 HELIX 11 AB2 ASN A 219 CYS A 235 1 17 HELIX 12 AB3 ASN A 251 SER A 261 1 11 HELIX 13 AB4 SER A 263 ASP A 269 1 7 HELIX 14 AB5 GLY A 313 ASP A 324 1 12 HELIX 15 AB6 ILE A 331 LEU A 343 1 13 HELIX 16 AB7 GLU A 359 VAL A 370 5 12 HELIX 17 AB8 LYS A 379 GLN A 391 1 13 HELIX 18 AB9 SER A 392 LYS A 396 5 5 HELIX 19 AC1 ALA B 57 ASN B 71 1 15 HELIX 20 AC2 PRO B 72 SER B 75 5 4 HELIX 21 AC3 ARG B 101 VAL B 106 1 6 HELIX 22 AC4 GLY B 108 LEU B 112 5 5 HELIX 23 AC5 PRO B 113 TYR B 122 1 10 HELIX 24 AC6 HIS B 154 SER B 164 1 11 HELIX 25 AC7 PRO B 186 ASN B 190 5 5 HELIX 26 AC8 LEU B 194 GLN B 206 1 13 HELIX 27 AC9 THR B 216 PHE B 218 5 3 HELIX 28 AD1 ASN B 219 CYS B 235 1 17 HELIX 29 AD2 ASN B 251 LEU B 262 1 12 HELIX 30 AD3 SER B 263 ASP B 269 1 7 HELIX 31 AD4 GLY B 313 THR B 323 1 11 HELIX 32 AD5 ASP B 324 VAL B 326 5 3 HELIX 33 AD6 ILE B 331 LEU B 343 1 13 HELIX 34 AD7 GLU B 359 VAL B 370 5 12 HELIX 35 AD8 LYS B 379 GLN B 391 1 13 HELIX 36 AD9 SER B 392 LYS B 396 5 5 SHEET 1 AA1 8 LEU A 130 ILE A 132 0 SHEET 2 AA1 8 ILE A 208 ARG A 214 -1 O MET A 210 N LEU A 131 SHEET 3 AA1 8 VAL A 176 GLN A 184 1 N GLN A 184 O TYR A 213 SHEET 4 AA1 8 LEU A 144 LYS A 149 1 N LEU A 146 O VAL A 177 SHEET 5 AA1 8 PHE A 240 ASP A 245 1 O PHE A 242 N ALA A 147 SHEET 6 AA1 8 TYR A 303 SER A 312 -1 O TYR A 311 N VAL A 241 SHEET 7 AA1 8 PHE A 271 ILE A 276 -1 N ILE A 276 O TYR A 303 SHEET 8 AA1 8 GLU A 348 LYS A 349 1 O GLU A 348 N PHE A 271 SHEET 1 AA2 3 VAL A 248 VAL A 250 0 SHEET 2 AA2 3 LEU A 374 HIS A 376 -1 O VAL A 375 N PHE A 249 SHEET 3 AA2 3 PHE A 353 ARG A 354 1 N ARG A 354 O LEU A 374 SHEET 1 AA3 8 LEU B 130 ILE B 132 0 SHEET 2 AA3 8 ILE B 208 ARG B 214 -1 O MET B 210 N LEU B 131 SHEET 3 AA3 8 VAL B 176 GLN B 184 1 N GLN B 184 O TYR B 213 SHEET 4 AA3 8 LEU B 144 LYS B 149 1 N LEU B 146 O VAL B 177 SHEET 5 AA3 8 PHE B 240 ASP B 245 1 O PHE B 242 N ALA B 147 SHEET 6 AA3 8 TYR B 303 SER B 312 -1 O TYR B 311 N VAL B 241 SHEET 7 AA3 8 PHE B 271 ILE B 276 -1 N ILE B 272 O LEU B 310 SHEET 8 AA3 8 GLU B 348 LYS B 349 1 O GLU B 348 N PHE B 271 SHEET 1 AA4 3 VAL B 248 VAL B 250 0 SHEET 2 AA4 3 LEU B 374 HIS B 376 -1 O VAL B 375 N PHE B 249 SHEET 3 AA4 3 PHE B 353 ARG B 354 1 N ARG B 354 O LEU B 374 SSBOND 1 CYS A 96 CYS A 125 1555 1555 2.06 SSBOND 2 CYS A 138 CYS A 235 1555 1555 2.05 SSBOND 3 CYS A 367 CYS A 397 1555 1555 2.04 SSBOND 4 CYS B 96 CYS B 125 1555 1555 2.05 SSBOND 5 CYS B 138 CYS B 235 1555 1555 2.05 SSBOND 6 CYS B 367 CYS B 397 1555 1555 2.04 LINK ND2 ASN A 127 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 173 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN A 219 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 127 C1 NAG B 401 1555 1555 1.45 LINK ND2 ASN B 219 C1 NAG F 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.42 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O6 NAG E 1 C1 FUC E 6 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.44 LINK O6 BMA E 3 C1 MAN E 5 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.42 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.44 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.45 LINK O6 BMA F 3 C1 MAN F 5 1555 1555 1.45 LINK OD2 ASP A 247 MG MG A 402 1555 1555 2.21 LINK O2A UDP A 401 MG MG A 402 1555 1555 2.40 LINK O2B UDP A 401 MG MG A 402 1555 1555 2.30 LINK MG MG A 402 O HOH A 506 1555 1555 2.35 LINK MG MG A 402 O HOH A 731 1555 1555 2.25 LINK OD2 ASP B 247 MG MG B 403 1555 1555 2.24 LINK O2A UDP B 402 MG MG B 403 1555 1555 2.29 LINK O2B UDP B 402 MG MG B 403 1555 1555 2.10 LINK MG MG B 403 O HOH B 508 1555 1555 2.29 LINK MG MG B 403 O HOH B 700 1555 1555 2.27 CISPEP 1 HIS A 376 SER A 377 0 -4.25 CISPEP 2 HIS B 376 SER B 377 0 -3.70 CRYST1 137.651 76.511 82.704 90.00 109.93 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007265 0.000000 0.002634 0.00000 SCALE2 0.000000 0.013070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012862 0.00000