HEADER SIGNALING PROTEIN 21-JUL-20 7JHX TITLE CRYSTAL STRUCTURE OF HEPG5 LIR/GABARAPL1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EARLY ESTROGEN-REGULATED PROTEIN,GABA(A) RECEPTOR-ASSOCIATED COMPND 5 PROTEIN-LIKE 1,GLANDULAR EPITHELIAL CELL PROTEIN 1,GEC-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ECTOPIC P GRANULES PROTEIN 5 HOMOLOG; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GABARAPL1, GEC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.W.S.CHEUNG,C.K.YIP REVDAT 2 18-OCT-23 7JHX 1 REMARK REVDAT 1 17-MAR-21 7JHX 0 JRNL AUTH S.E.NAM,Y.W.S.CHEUNG,T.N.NGUYEN,M.GONG,S.CHAN,M.LAZAROU, JRNL AUTH 2 C.K.YIP JRNL TITL INSIGHTS ON AUTOPHAGOSOME-LYSOSOME TETHERING FROM STRUCTURAL JRNL TITL 2 AND BIOCHEMICAL CHARACTERIZATION OF HUMAN AUTOPHAGY FACTOR JRNL TITL 3 EPG5. JRNL REF COMMUN BIOL V. 4 291 2021 JRNL REFN ESSN 2399-3642 JRNL PMID 33674710 JRNL DOI 10.1038/S42003-021-01830-X REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 21184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.0000 - 3.6536 0.98 3199 140 0.1638 0.2110 REMARK 3 2 3.6536 - 2.9000 0.98 3093 150 0.1809 0.2234 REMARK 3 3 2.9000 - 2.5334 0.97 3010 156 0.2051 0.2605 REMARK 3 4 2.5334 - 2.3018 0.97 3004 168 0.2267 0.2889 REMARK 3 5 2.3018 - 2.1368 0.97 2982 152 0.2218 0.2727 REMARK 3 6 2.1368 - 2.0108 0.94 2923 136 0.2416 0.2660 REMARK 3 7 2.0108 - 1.9101 0.64 1974 97 0.2800 0.3021 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4182 -8.8563 9.6693 REMARK 3 T TENSOR REMARK 3 T11: 0.2920 T22: 0.2625 REMARK 3 T33: 0.1853 T12: 0.0635 REMARK 3 T13: 0.0051 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 9.2430 L22: 5.1013 REMARK 3 L33: 7.7267 L12: 2.3241 REMARK 3 L13: -1.1705 L23: 5.5452 REMARK 3 S TENSOR REMARK 3 S11: -0.2228 S12: 0.7234 S13: -0.1688 REMARK 3 S21: -1.3147 S22: -0.2336 S23: 0.2390 REMARK 3 S31: 0.1987 S32: 0.3137 S33: 0.4299 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 566 THROUGH 571 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0272 11.1567 12.6287 REMARK 3 T TENSOR REMARK 3 T11: 0.2913 T22: 0.3823 REMARK 3 T33: 0.3736 T12: 0.0134 REMARK 3 T13: 0.0141 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 5.9719 L22: 8.2347 REMARK 3 L33: 2.1472 L12: 1.8372 REMARK 3 L13: 0.8150 L23: 1.2984 REMARK 3 S TENSOR REMARK 3 S11: -0.1488 S12: 0.3975 S13: 0.0173 REMARK 3 S21: -0.2771 S22: 0.4786 S23: -0.0493 REMARK 3 S31: -0.8829 S32: -0.4472 S33: -0.3053 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 564 THROUGH 571 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2530 -6.4902 30.3803 REMARK 3 T TENSOR REMARK 3 T11: 0.1663 T22: 0.2247 REMARK 3 T33: 0.3118 T12: 0.0087 REMARK 3 T13: 0.0552 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 8.0567 L22: 7.3203 REMARK 3 L33: 7.2587 L12: 0.0168 REMARK 3 L13: -5.5531 L23: 2.5077 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: -1.0247 S13: 0.3837 REMARK 3 S21: -0.3974 S22: 0.3553 S23: -1.0171 REMARK 3 S31: -0.1478 S32: 1.0179 S33: -0.3588 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2198 -4.1842 17.1929 REMARK 3 T TENSOR REMARK 3 T11: 0.1659 T22: 0.2967 REMARK 3 T33: 0.2713 T12: -0.0550 REMARK 3 T13: 0.0060 T23: 0.0836 REMARK 3 L TENSOR REMARK 3 L11: 3.9417 L22: 5.2044 REMARK 3 L33: 6.4488 L12: -4.0051 REMARK 3 L13: 0.1531 L23: 1.8642 REMARK 3 S TENSOR REMARK 3 S11: 0.2942 S12: -0.8143 S13: -0.5668 REMARK 3 S21: 0.2383 S22: -0.0563 S23: 0.1801 REMARK 3 S31: 0.7336 S32: -0.1231 S33: -0.1949 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9080 3.3994 5.2269 REMARK 3 T TENSOR REMARK 3 T11: 0.2128 T22: 0.4820 REMARK 3 T33: 0.2162 T12: 0.0678 REMARK 3 T13: -0.0108 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 3.8389 L22: 3.6218 REMARK 3 L33: 7.9307 L12: 2.6376 REMARK 3 L13: -3.0474 L23: -5.0918 REMARK 3 S TENSOR REMARK 3 S11: 0.1426 S12: 0.8570 S13: 0.5418 REMARK 3 S21: -0.1523 S22: 0.0467 S23: 0.3059 REMARK 3 S31: -0.2395 S32: 0.0646 S33: -0.0852 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2604 5.1738 9.7842 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.2661 REMARK 3 T33: 0.2427 T12: 0.0513 REMARK 3 T13: 0.0691 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 5.8004 L22: 5.3202 REMARK 3 L33: 9.3668 L12: -0.4557 REMARK 3 L13: 1.3639 L23: -2.7783 REMARK 3 S TENSOR REMARK 3 S11: 0.0905 S12: 0.3640 S13: 0.6532 REMARK 3 S21: -0.1973 S22: 0.2244 S23: 0.0000 REMARK 3 S31: -0.3632 S32: -0.2807 S33: -0.3613 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2208 -0.6417 25.1404 REMARK 3 T TENSOR REMARK 3 T11: 0.2505 T22: 0.2576 REMARK 3 T33: 0.1475 T12: 0.0298 REMARK 3 T13: 0.0766 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 7.1842 L22: 3.6477 REMARK 3 L33: 7.3154 L12: 0.6813 REMARK 3 L13: 2.2610 L23: 0.1039 REMARK 3 S TENSOR REMARK 3 S11: -0.2465 S12: -0.8890 S13: -0.3485 REMARK 3 S21: 0.5820 S22: 0.2842 S23: 0.1887 REMARK 3 S31: -0.0859 S32: -0.3755 S33: 0.0111 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2034 1.9001 15.1489 REMARK 3 T TENSOR REMARK 3 T11: 0.0893 T22: 0.1293 REMARK 3 T33: 0.1233 T12: 0.0008 REMARK 3 T13: 0.0049 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 3.8078 L22: 2.3241 REMARK 3 L33: 3.7852 L12: -1.2269 REMARK 3 L13: 1.3145 L23: 0.0549 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: 0.2482 S13: 0.2074 REMARK 3 S21: -0.0166 S22: 0.0038 S23: 0.0290 REMARK 3 S31: -0.2565 S32: -0.0300 S33: 0.0165 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3799 -2.5308 4.0421 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.3102 REMARK 3 T33: 0.1308 T12: 0.0322 REMARK 3 T13: -0.0312 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 5.7935 L22: 2.1040 REMARK 3 L33: 2.3280 L12: -0.0669 REMARK 3 L13: -1.7125 L23: -1.1366 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.6886 S13: -0.1983 REMARK 3 S21: -0.0102 S22: -0.0022 S23: 0.1812 REMARK 3 S31: 0.0763 S32: -0.3134 S33: -0.0147 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5902 -7.1851 19.7887 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.1890 REMARK 3 T33: 0.2095 T12: -0.0207 REMARK 3 T13: 0.0222 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 6.7158 L22: 1.3207 REMARK 3 L33: 4.6280 L12: -2.3498 REMARK 3 L13: 3.9809 L23: -0.4414 REMARK 3 S TENSOR REMARK 3 S11: 0.1216 S12: -0.4169 S13: -0.5033 REMARK 3 S21: -0.0118 S22: 0.1741 S23: 0.0776 REMARK 3 S31: 0.4633 S32: -0.5029 S33: -0.3469 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1587 -16.1355 15.1449 REMARK 3 T TENSOR REMARK 3 T11: 0.2727 T22: 0.2746 REMARK 3 T33: 0.1504 T12: 0.0711 REMARK 3 T13: 0.0380 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 3.6838 L22: 7.2410 REMARK 3 L33: 1.9855 L12: 2.6684 REMARK 3 L13: 1.3938 L23: 3.7288 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.8590 S13: 0.3870 REMARK 3 S21: -0.8382 S22: -0.2077 S23: 0.1822 REMARK 3 S31: 0.1959 S32: 0.4462 S33: 0.1834 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4199 -20.5056 28.2316 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.1503 REMARK 3 T33: 0.1543 T12: 0.0139 REMARK 3 T13: -0.0226 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 4.4446 L22: 3.1197 REMARK 3 L33: 3.9800 L12: -2.1009 REMARK 3 L13: -3.4808 L23: 2.9553 REMARK 3 S TENSOR REMARK 3 S11: -0.2149 S12: -0.3170 S13: -0.0752 REMARK 3 S21: 0.2277 S22: 0.0135 S23: -0.1688 REMARK 3 S31: 0.1139 S32: 0.7230 S33: 0.2007 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5734 -11.9519 28.1905 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.0754 REMARK 3 T33: 0.0847 T12: -0.0090 REMARK 3 T13: -0.0040 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 3.4704 L22: 3.0784 REMARK 3 L33: 7.7965 L12: -0.6445 REMARK 3 L13: 1.0316 L23: -2.3472 REMARK 3 S TENSOR REMARK 3 S11: -0.1426 S12: 0.0791 S13: 0.1007 REMARK 3 S21: 0.0058 S22: -0.0987 S23: -0.2225 REMARK 3 S31: -0.0448 S32: 0.1183 S33: 0.1966 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2226 -4.4953 13.9627 REMARK 3 T TENSOR REMARK 3 T11: 0.1386 T22: 0.1796 REMARK 3 T33: 0.1449 T12: -0.0179 REMARK 3 T13: 0.0783 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 7.6199 L22: 8.1708 REMARK 3 L33: 7.1462 L12: -1.5754 REMARK 3 L13: 4.1217 L23: -1.3324 REMARK 3 S TENSOR REMARK 3 S11: -0.1199 S12: 0.7212 S13: 0.4380 REMARK 3 S21: -0.4788 S22: -0.0892 S23: -0.1404 REMARK 3 S31: -0.0310 S32: 0.3905 S33: 0.1907 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0499 -5.3597 28.4794 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.1149 REMARK 3 T33: 0.0721 T12: 0.0128 REMARK 3 T13: -0.0320 T23: -0.0476 REMARK 3 L TENSOR REMARK 3 L11: 5.2682 L22: 3.3341 REMARK 3 L33: 2.4147 L12: -2.8013 REMARK 3 L13: 1.1821 L23: -2.0270 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: 0.0009 S13: 0.0376 REMARK 3 S21: 0.1795 S22: 0.0093 S23: -0.1574 REMARK 3 S31: 0.0409 S32: -0.0036 S33: 0.0801 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 68 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7337 0.3257 16.4991 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.1337 REMARK 3 T33: 0.1073 T12: -0.0026 REMARK 3 T13: -0.0196 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 5.6904 L22: 6.8923 REMARK 3 L33: 3.9426 L12: -1.1242 REMARK 3 L13: 1.3014 L23: 2.4284 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.1382 S13: 0.5441 REMARK 3 S21: -0.4072 S22: -0.0151 S23: -0.2925 REMARK 3 S31: -0.3524 S32: 0.1880 S33: 0.0129 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4323 -16.6476 25.8040 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.0818 REMARK 3 T33: 0.1461 T12: -0.0353 REMARK 3 T13: 0.0218 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 5.6495 L22: 3.9063 REMARK 3 L33: 4.9591 L12: -2.8674 REMARK 3 L13: 3.5032 L23: -0.2438 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.1237 S13: -0.3993 REMARK 3 S21: 0.0708 S22: 0.1163 S23: 0.1374 REMARK 3 S31: 0.2340 S32: -0.1471 S33: -0.1139 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6229 -17.4857 22.0981 REMARK 3 T TENSOR REMARK 3 T11: 0.0789 T22: 0.0900 REMARK 3 T33: 0.0926 T12: -0.0130 REMARK 3 T13: -0.0182 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 5.0038 L22: 7.5115 REMARK 3 L33: 6.7084 L12: -4.5313 REMARK 3 L13: 2.5828 L23: -5.2628 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: -0.0922 S13: -0.2830 REMARK 3 S21: 0.0055 S22: 0.0411 S23: 0.2315 REMARK 3 S31: 0.2727 S32: 0.2485 S33: -0.0712 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 57.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.76200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2R2Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 MES BUFFER REMARK 280 PH 5.5, 29% (W/V) PEG 4000, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.47700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.54100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.47700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.54100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASP C 560 REMARK 465 GLU C 561 REMARK 465 ASP C 562 REMARK 465 PRO C 563 REMARK 465 GLU C 564 REMARK 465 THR C 565 REMARK 465 ASP D 560 REMARK 465 GLU D 561 REMARK 465 ASP D 562 REMARK 465 PRO D 563 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 THR D 565 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 40 66.55 -103.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 DBREF 7JHX A 1 117 UNP Q9H0R8 GBRL1_HUMAN 1 117 DBREF 7JHX B 1 117 UNP Q9H0R8 GBRL1_HUMAN 1 117 DBREF 7JHX C 560 571 UNP Q9HCE0 EPG5_HUMAN 560 571 DBREF 7JHX D 560 571 UNP Q9HCE0 EPG5_HUMAN 560 571 SEQADV 7JHX GLY A -4 UNP Q9H0R8 EXPRESSION TAG SEQADV 7JHX PRO A -3 UNP Q9H0R8 EXPRESSION TAG SEQADV 7JHX LEU A -2 UNP Q9H0R8 EXPRESSION TAG SEQADV 7JHX GLY A -1 UNP Q9H0R8 EXPRESSION TAG SEQADV 7JHX SER A 0 UNP Q9H0R8 EXPRESSION TAG SEQADV 7JHX GLY B -4 UNP Q9H0R8 EXPRESSION TAG SEQADV 7JHX PRO B -3 UNP Q9H0R8 EXPRESSION TAG SEQADV 7JHX LEU B -2 UNP Q9H0R8 EXPRESSION TAG SEQADV 7JHX GLY B -1 UNP Q9H0R8 EXPRESSION TAG SEQADV 7JHX SER B 0 UNP Q9H0R8 EXPRESSION TAG SEQRES 1 A 122 GLY PRO LEU GLY SER MET LYS PHE GLN TYR LYS GLU ASP SEQRES 2 A 122 HIS PRO PHE GLU TYR ARG LYS LYS GLU GLY GLU LYS ILE SEQRES 3 A 122 ARG LYS LYS TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU SEQRES 4 A 122 LYS ALA PRO LYS ALA ARG VAL PRO ASP LEU ASP LYS ARG SEQRES 5 A 122 LYS TYR LEU VAL PRO SER ASP LEU THR VAL GLY GLN PHE SEQRES 6 A 122 TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU ARG PRO GLU SEQRES 7 A 122 ASP ALA LEU PHE PHE PHE VAL ASN ASN THR ILE PRO PRO SEQRES 8 A 122 THR SER ALA THR MET GLY GLN LEU TYR GLU ASP ASN HIS SEQRES 9 A 122 GLU GLU ASP TYR PHE LEU TYR VAL ALA TYR SER ASP GLU SEQRES 10 A 122 SER VAL TYR GLY LYS SEQRES 1 B 122 GLY PRO LEU GLY SER MET LYS PHE GLN TYR LYS GLU ASP SEQRES 2 B 122 HIS PRO PHE GLU TYR ARG LYS LYS GLU GLY GLU LYS ILE SEQRES 3 B 122 ARG LYS LYS TYR PRO ASP ARG VAL PRO VAL ILE VAL GLU SEQRES 4 B 122 LYS ALA PRO LYS ALA ARG VAL PRO ASP LEU ASP LYS ARG SEQRES 5 B 122 LYS TYR LEU VAL PRO SER ASP LEU THR VAL GLY GLN PHE SEQRES 6 B 122 TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU ARG PRO GLU SEQRES 7 B 122 ASP ALA LEU PHE PHE PHE VAL ASN ASN THR ILE PRO PRO SEQRES 8 B 122 THR SER ALA THR MET GLY GLN LEU TYR GLU ASP ASN HIS SEQRES 9 B 122 GLU GLU ASP TYR PHE LEU TYR VAL ALA TYR SER ASP GLU SEQRES 10 B 122 SER VAL TYR GLY LYS SEQRES 1 C 12 ASP GLU ASP PRO GLU THR SER TRP ILE LEU LEU ASN SEQRES 1 D 12 ASP GLU ASP PRO GLU THR SER TRP ILE LEU LEU ASN HET SO4 A 201 5 HET SO4 B 201 5 HET SO4 B 202 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *241(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 ILE A 68 1 13 HELIX 4 AA4 THR A 90 HIS A 99 1 10 HELIX 5 AA5 PHE B 3 HIS B 9 1 7 HELIX 6 AA6 PRO B 10 TYR B 25 1 16 HELIX 7 AA7 THR B 56 ILE B 68 1 13 HELIX 8 AA8 THR B 90 HIS B 99 1 10 SHEET 1 AA1 5 PHE A 77 PHE A 79 0 SHEET 2 AA1 5 LEU A 105 SER A 110 -1 O SER A 110 N PHE A 77 SHEET 3 AA1 5 ARG A 28 LYS A 35 1 N ILE A 32 O VAL A 107 SHEET 4 AA1 5 LYS A 48 PRO A 52 -1 O TYR A 49 N VAL A 31 SHEET 5 AA1 5 ILE C 568 LEU C 569 1 O ILE C 568 N LEU A 50 SHEET 1 AA2 5 PHE B 77 PHE B 79 0 SHEET 2 AA2 5 LEU B 105 SER B 110 -1 O ALA B 108 N PHE B 79 SHEET 3 AA2 5 ARG B 28 LYS B 35 1 N ILE B 32 O VAL B 107 SHEET 4 AA2 5 LYS B 48 PRO B 52 -1 O TYR B 49 N VAL B 31 SHEET 5 AA2 5 TRP D 567 LEU D 569 1 O ILE D 568 N LEU B 50 SITE 1 AC1 4 HIS A 9 ARG A 47 LYS A 48 HOH A 344 SITE 1 AC2 6 TYR B 5 HIS B 9 ARG B 47 LYS B 48 SITE 2 AC2 6 HOH B 336 SER D 566 SITE 1 AC3 4 ASP B 54 TYR B 103 HOH B 317 HOH B 380 CRYST1 122.954 33.082 78.858 90.00 114.28 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008133 0.000000 0.003670 0.00000 SCALE2 0.000000 0.030228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013912 0.00000