HEADER VIRAL PROTEIN 21-JUL-20 7JHZ TITLE CRYSTAL STRUCTURE OF THE CARBOHYDRATE-BINDING DOMAIN VP8* OF HUMAN TITLE 2 P[8] ROTAVIRUS STRAIN BM13851 IN COMPLEX WITH LNDFH I COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP4; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ROTAVIRUS A; SOURCE 3 ORGANISM_TAXID: 10941; SOURCE 4 GENE: VP8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROTAVIRUS, HOST RECEPTOR INTERACTION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.XU,M.R.STUCKERT,K.R.MCGINNIS,X.JIANG,M.A.KENNEDY REVDAT 3 18-OCT-23 7JHZ 1 REMARK REVDAT 2 22-SEP-21 7JHZ 1 JRNL REMARK REVDAT 1 28-JUL-21 7JHZ 0 JRNL AUTH S.XU,K.R.MCGINNIS,Y.LIU,P.HUANG,M.TAN,M.R.STUCKERT, JRNL AUTH 2 R.E.BURNSIDE,E.G.JACOB,S.NI,X.JIANG,M.A.KENNEDY JRNL TITL STRUCTURAL BASIS OF P[II] ROTAVIRUS EVOLUTION AND HOST JRNL TITL 2 RANGES UNDER SELECTION OF HISTO-BLOOD GROUP ANTIGENS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 34475219 JRNL DOI 10.1073/PNAS.2107963118 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 13225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 608 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 984 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.92000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.389 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.849 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3896 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3416 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5326 ; 1.593 ; 1.701 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7854 ; 1.344 ; 1.641 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 7.918 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;33.876 ;22.618 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;14.263 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;13.443 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4388 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 998 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7JHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 56.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VKX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES SODIUM PH 7.5, 2% V/V REMARK 280 POLYETHYLENE GLYCOL 400,2.0 M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.09600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.09600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 PRO A 145 REMARK 465 ARG A 146 REMARK 465 SER A 147 REMARK 465 GLN A 148 REMARK 465 GLU A 149 REMARK 465 SER A 150 REMARK 465 LYS A 151 REMARK 465 CYS A 152 REMARK 465 ASN A 153 REMARK 465 GLU A 154 REMARK 465 LEU A 160 REMARK 465 ILE B 1 REMARK 465 LEU B 2 REMARK 465 ASP B 3 REMARK 465 SER B 147 REMARK 465 GLN B 148 REMARK 465 GLU B 149 REMARK 465 SER B 150 REMARK 465 LYS B 151 REMARK 465 LEU B 160 REMARK 465 ILE C 1 REMARK 465 LEU C 2 REMARK 465 ARG C 146 REMARK 465 SER C 147 REMARK 465 GLN C 148 REMARK 465 GLU C 149 REMARK 465 SER C 150 REMARK 465 LYS C 151 REMARK 465 CYS C 152 REMARK 465 LEU C 160 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GAL E 1 O5 NAG E 2 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 119 O ASN C 157 1554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 15.91 80.88 REMARK 500 SER A 36 -64.27 -134.70 REMARK 500 HIS A 48 65.30 62.76 REMARK 500 ASN A 129 69.84 -152.33 REMARK 500 ASP B 16 18.81 83.15 REMARK 500 SER B 36 -66.10 -135.35 REMARK 500 HIS B 48 65.18 64.48 REMARK 500 ASP C 16 16.99 82.14 REMARK 500 SER C 36 -69.56 -131.00 REMARK 500 HIS C 48 65.38 63.56 REMARK 500 ASN C 129 69.38 -151.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 BGC F 1 DBREF 7JHZ A 1 160 UNP M4VPJ0 M4VPJ0_9REOV 17 176 DBREF 7JHZ B 1 160 UNP M4VPJ0 M4VPJ0_9REOV 17 176 DBREF 7JHZ C 1 160 UNP M4VPJ0 M4VPJ0_9REOV 17 176 SEQRES 1 A 160 ILE LEU ASP GLY PRO TYR GLN PRO THR THR PHE THR PRO SEQRES 2 A 160 PRO THR ASP TYR TRP ILE LEU ILE ASN SER ASN THR ASN SEQRES 3 A 160 GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP PHE TRP SEQRES 4 A 160 THR ALA VAL ILE ALA VAL GLU PRO HIS VAL ASN PRO VAL SEQRES 5 A 160 ASP ARG GLN TYR ASN VAL PHE GLY GLU ASN LYS GLN PHE SEQRES 6 A 160 ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE LEU GLU SEQRES 7 A 160 MET PHE ARG GLY SER SER GLN ASN ASP PHE TYR ASN ARG SEQRES 8 A 160 ARG THR LEU THR SER ASP THR ARG LEU VAL GLY ILE LEU SEQRES 9 A 160 LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY GLU THR SEQRES 10 A 160 PRO ARG ALA THR THR ASP SER SER ASN THR ALA ASN LEU SEQRES 11 A 160 ASN GLY ILE SER ILE THR ILE HIS SER GLU PHE TYR ILE SEQRES 12 A 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 A 160 ASN ASN GLY LEU SEQRES 1 B 160 ILE LEU ASP GLY PRO TYR GLN PRO THR THR PHE THR PRO SEQRES 2 B 160 PRO THR ASP TYR TRP ILE LEU ILE ASN SER ASN THR ASN SEQRES 3 B 160 GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP PHE TRP SEQRES 4 B 160 THR ALA VAL ILE ALA VAL GLU PRO HIS VAL ASN PRO VAL SEQRES 5 B 160 ASP ARG GLN TYR ASN VAL PHE GLY GLU ASN LYS GLN PHE SEQRES 6 B 160 ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE LEU GLU SEQRES 7 B 160 MET PHE ARG GLY SER SER GLN ASN ASP PHE TYR ASN ARG SEQRES 8 B 160 ARG THR LEU THR SER ASP THR ARG LEU VAL GLY ILE LEU SEQRES 9 B 160 LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY GLU THR SEQRES 10 B 160 PRO ARG ALA THR THR ASP SER SER ASN THR ALA ASN LEU SEQRES 11 B 160 ASN GLY ILE SER ILE THR ILE HIS SER GLU PHE TYR ILE SEQRES 12 B 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 B 160 ASN ASN GLY LEU SEQRES 1 C 160 ILE LEU ASP GLY PRO TYR GLN PRO THR THR PHE THR PRO SEQRES 2 C 160 PRO THR ASP TYR TRP ILE LEU ILE ASN SER ASN THR ASN SEQRES 3 C 160 GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP PHE TRP SEQRES 4 C 160 THR ALA VAL ILE ALA VAL GLU PRO HIS VAL ASN PRO VAL SEQRES 5 C 160 ASP ARG GLN TYR ASN VAL PHE GLY GLU ASN LYS GLN PHE SEQRES 6 C 160 ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE LEU GLU SEQRES 7 C 160 MET PHE ARG GLY SER SER GLN ASN ASP PHE TYR ASN ARG SEQRES 8 C 160 ARG THR LEU THR SER ASP THR ARG LEU VAL GLY ILE LEU SEQRES 9 C 160 LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY GLU THR SEQRES 10 C 160 PRO ARG ALA THR THR ASP SER SER ASN THR ALA ASN LEU SEQRES 11 C 160 ASN GLY ILE SER ILE THR ILE HIS SER GLU PHE TYR ILE SEQRES 12 C 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 C 160 ASN ASN GLY LEU HET BGC F 1 12 HET GAL F 2 11 HET NAG F 3 14 HET GAL F 4 11 HET FUC F 5 10 HET FUC F 6 10 HET GAL E 1 12 HET NAG E 2 14 HET GAL E 3 11 HET FUC E 4 10 HET FUC E 5 10 HET GOL B 201 6 HET GOL C 301 6 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 BGC C6 H12 O6 FORMUL 4 GAL 4(C6 H12 O6) FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 FUC 4(C6 H12 O5) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *9(H2 O) HELIX 1 AA1 ASN B 153 GLY B 159 1 7 HELIX 2 AA2 GLU C 154 GLY C 159 1 6 SHEET 1 AA111 ASP A 3 TYR A 6 0 SHEET 2 AA111 PHE A 141 ILE A 144 -1 O PHE A 141 N TYR A 6 SHEET 3 AA111 TRP A 18 ASN A 22 -1 N LEU A 20 O TYR A 142 SHEET 4 AA111 LEU A 100 TYR A 106 -1 O VAL A 101 N ILE A 21 SHEET 5 AA111 ARG A 109 GLU A 116 -1 O TRP A 111 N LEU A 104 SHEET 6 AA111 TYR A 89 SER A 96 1 N THR A 95 O GLY A 115 SHEET 7 AA111 TRP A 74 ARG A 81 -1 N PHE A 80 O TYR A 89 SHEET 8 AA111 TRP A 39 VAL A 45 -1 N ALA A 41 O MET A 79 SHEET 9 AA111 VAL A 28 THR A 33 -1 N VAL A 29 O VAL A 42 SHEET 10 AA111 SER A 134 ILE A 137 -1 O THR A 136 N GLU A 31 SHEET 11 AA111 THR A 9 PHE A 11 -1 N THR A 9 O ILE A 137 SHEET 1 AA2 6 ASP A 3 TYR A 6 0 SHEET 2 AA2 6 PHE A 141 ILE A 144 -1 O PHE A 141 N TYR A 6 SHEET 3 AA2 6 TRP A 18 ASN A 22 -1 N LEU A 20 O TYR A 142 SHEET 4 AA2 6 LEU A 100 TYR A 106 -1 O VAL A 101 N ILE A 21 SHEET 5 AA2 6 ARG A 109 GLU A 116 -1 O TRP A 111 N LEU A 104 SHEET 6 AA2 6 THR A 121 ASN A 126 -1 O THR A 121 N HIS A 114 SHEET 1 AA3 2 VAL A 49 VAL A 58 0 SHEET 2 AA3 2 GLU A 61 ASN A 69 -1 O LYS A 63 N TYR A 56 SHEET 1 AA4 8 THR B 9 PHE B 11 0 SHEET 2 AA4 8 SER B 134 ILE B 137 -1 O ILE B 137 N THR B 9 SHEET 3 AA4 8 GLY B 27 THR B 33 -1 N THR B 33 O SER B 134 SHEET 4 AA4 8 TRP B 39 VAL B 45 -1 O VAL B 42 N VAL B 29 SHEET 5 AA4 8 TRP B 74 ARG B 81 -1 O MET B 79 N ALA B 41 SHEET 6 AA4 8 TYR B 89 SER B 96 -1 O TYR B 89 N PHE B 80 SHEET 7 AA4 8 ARG B 109 GLU B 116 1 O GLY B 115 N THR B 95 SHEET 8 AA4 8 THR B 121 ASN B 126 -1 O THR B 121 N HIS B 114 SHEET 1 AA510 THR B 9 PHE B 11 0 SHEET 2 AA510 SER B 134 ILE B 137 -1 O ILE B 137 N THR B 9 SHEET 3 AA510 GLY B 27 THR B 33 -1 N THR B 33 O SER B 134 SHEET 4 AA510 TRP B 39 VAL B 45 -1 O VAL B 42 N VAL B 29 SHEET 5 AA510 TRP B 74 ARG B 81 -1 O MET B 79 N ALA B 41 SHEET 6 AA510 TYR B 89 SER B 96 -1 O TYR B 89 N PHE B 80 SHEET 7 AA510 ARG B 109 GLU B 116 1 O GLY B 115 N THR B 95 SHEET 8 AA510 LEU B 100 TYR B 106 -1 N LEU B 104 O TRP B 111 SHEET 9 AA510 TYR B 17 ASN B 22 -1 N ILE B 21 O VAL B 101 SHEET 10 AA510 PHE B 141 PRO B 145 -1 O ILE B 144 N TRP B 18 SHEET 1 AA6 2 VAL B 49 VAL B 58 0 SHEET 2 AA6 2 GLU B 61 ASN B 69 -1 O LYS B 63 N TYR B 56 SHEET 1 AA7 8 THR C 9 PHE C 11 0 SHEET 2 AA7 8 SER C 134 ILE C 137 -1 O ILE C 137 N THR C 9 SHEET 3 AA7 8 VAL C 28 THR C 33 -1 N GLU C 31 O THR C 136 SHEET 4 AA7 8 TRP C 39 VAL C 45 -1 O VAL C 42 N VAL C 29 SHEET 5 AA7 8 TRP C 74 ARG C 81 -1 O MET C 79 N ALA C 41 SHEET 6 AA7 8 TYR C 89 SER C 96 -1 O TYR C 89 N PHE C 80 SHEET 7 AA7 8 ARG C 109 GLU C 116 1 O GLY C 115 N THR C 95 SHEET 8 AA7 8 THR C 121 ASN C 126 -1 O THR C 121 N HIS C 114 SHEET 1 AA810 THR C 9 PHE C 11 0 SHEET 2 AA810 SER C 134 ILE C 137 -1 O ILE C 137 N THR C 9 SHEET 3 AA810 VAL C 28 THR C 33 -1 N GLU C 31 O THR C 136 SHEET 4 AA810 TRP C 39 VAL C 45 -1 O VAL C 42 N VAL C 29 SHEET 5 AA810 TRP C 74 ARG C 81 -1 O MET C 79 N ALA C 41 SHEET 6 AA810 TYR C 89 SER C 96 -1 O TYR C 89 N PHE C 80 SHEET 7 AA810 ARG C 109 GLU C 116 1 O GLY C 115 N THR C 95 SHEET 8 AA810 LEU C 100 TYR C 106 -1 N LEU C 104 O TRP C 111 SHEET 9 AA810 TRP C 18 ASN C 22 -1 N ILE C 21 O VAL C 101 SHEET 10 AA810 PHE C 141 ILE C 144 -1 O ILE C 144 N TRP C 18 SHEET 1 AA9 2 VAL C 49 VAL C 58 0 SHEET 2 AA9 2 GLU C 61 ASN C 69 -1 O LYS C 63 N TYR C 56 LINK O4 BGC F 1 C1 GAL F 2 1555 1555 1.42 LINK O3 GAL F 2 C1 NAG F 3 1555 1555 1.53 LINK O3 NAG F 3 C1 GAL F 4 1555 1555 1.46 LINK O4 NAG F 3 C1 FUC F 6 1555 1555 1.39 LINK O2 GAL F 4 C1 FUC F 5 1555 1555 1.46 LINK O3 GAL E 1 C1 NAG E 2 1555 1555 1.44 LINK O3 NAG E 2 C1 GAL E 3 1555 1555 1.47 LINK O4 NAG E 2 C1 FUC E 5 1555 1555 1.44 LINK O2 GAL E 3 C1 FUC E 4 1555 1555 1.45 CISPEP 1 GLY A 4 PRO A 5 0 9.53 CISPEP 2 THR A 117 PRO A 118 0 10.94 CISPEP 3 GLY B 4 PRO B 5 0 8.56 CISPEP 4 THR B 117 PRO B 118 0 5.63 CISPEP 5 GLY C 4 PRO C 5 0 9.58 CISPEP 6 THR C 117 PRO C 118 0 9.38 CRYST1 112.192 63.390 72.260 90.00 91.15 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008913 0.000000 0.000180 0.00000 SCALE2 0.000000 0.015775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013842 0.00000