HEADER TOXIN 22-JUL-20 7JI1 TITLE NMR STRUCTURE OF THE STREPTOCOCCUS PYOGENES NAD+-GLYCOHYDROLASE TITLE 2 TRANSLOCATION DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYL CYCLASE / CYCLIC ADP-RIBOSE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRANSLOCATION DOMAIN, RESIDUES 38-194; COMPND 5 SYNONYM: N-ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE,NICOTINE COMPND 6 ADENINE DINUCLEOTIDE GLYCOHYDROLASE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: NGA, E0F66_06235, GQY31_00740, GTK53_00835; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BETA SANDWICH, TOXIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.J.VELARDE,A.PIAI,J.J.CHOU,M.WESSELS REVDAT 3 15-MAY-24 7JI1 1 REMARK REVDAT 2 09-FEB-22 7JI1 1 JRNL REVDAT 1 28-JUL-21 7JI1 0 JRNL AUTH J.J.VELARDE,A.PIAI,I.J.LICHTENSTEIN,N.N.LYNSKEY,J.J.CHOU, JRNL AUTH 2 M.R.WESSELS JRNL TITL STRUCTURE OF THE STREPTOCOCCUS PYOGENES NAD + GLYCOHYDROLASE JRNL TITL 2 TRANSLOCATION DOMAIN AND ITS ESSENTIAL ROLE IN TOXIN BINDING JRNL TITL 3 TO OROPHARYNGEAL KERATINOCYTES. JRNL REF J.BACTERIOL. V. 204 36621 2022 JRNL REFN ESSN 1098-5530 JRNL PMID 34694903 JRNL DOI 10.1128/JB.00366-21 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250603. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 5.5; 5.5 REMARK 210 IONIC STRENGTH : 50MM NACL; 80MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] NADASE REMARK 210 TRANSLOCATION DOMAIN, 20MM MES, REMARK 210 50MM NACL, 90% H2O/10% D2O; 0.56 REMARK 210 MM [U-13C; U-15N; U-2H] NADASE REMARK 210 TRANSLOCATION DOMAIN, 20MM MES, REMARK 210 80MM NACL, 0.5MM EDTA, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-EDITED NOESY-TROSY-HSQC; REMARK 210 3D 13C-EDITED NOESY; 2D 1H-15N REMARK 210 TROSY HSQC; 3D TROSY HNCA; 3D REMARK 210 TROSY HNCACB; 3D TROSY HN(CA)CO; REMARK 210 3D TROSY HNCO; 3D TROSY HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, CARA, XEASY, REMARK 210 NMRPIPE, SPARKY, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : 15 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLY A 36 REMARK 465 PRO A 37 REMARK 465 VAL A 38 REMARK 465 SER A 39 REMARK 465 GLY A 40 REMARK 465 LYS A 41 REMARK 465 GLU A 42 REMARK 465 ASN A 43 REMARK 465 LYS A 44 REMARK 465 LYS A 45 REMARK 465 SER A 46 REMARK 465 ASP A 47 REMARK 465 VAL A 48 REMARK 465 LYS A 49 REMARK 465 TYR A 50 REMARK 465 GLU A 51 REMARK 465 THR A 52 REMARK 465 THR A 53 REMARK 465 LYS A 54 REMARK 465 VAL A 55 REMARK 465 MET A 56 REMARK 465 GLU A 57 REMARK 465 ALA A 58 REMARK 465 ASN A 59 REMARK 465 ALA A 60 REMARK 465 THR A 61 REMARK 465 SER A 62 REMARK 465 SER A 63 REMARK 465 LYS A 64 REMARK 465 GLU A 65 REMARK 465 ASP A 66 REMARK 465 ASN A 67 REMARK 465 HIS A 68 REMARK 465 VAL A 69 REMARK 465 MET A 70 REMARK 465 HIS A 71 REMARK 465 THR A 72 REMARK 465 LEU A 73 REMARK 465 ASP A 74 REMARK 465 GLY A 75 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 79 145.85 62.62 REMARK 500 1 SER A 85 -45.99 171.59 REMARK 500 1 PRO A 86 -166.48 -68.84 REMARK 500 1 ALA A 127 -76.90 65.86 REMARK 500 1 ASN A 135 -171.15 87.29 REMARK 500 1 ASN A 137 58.44 160.96 REMARK 500 1 LYS A 138 -147.36 54.83 REMARK 500 1 ASP A 149 121.97 59.07 REMARK 500 1 LYS A 153 -47.79 -175.08 REMARK 500 1 LYS A 163 52.92 -173.38 REMARK 500 1 LEU A 164 132.92 178.62 REMARK 500 1 GLN A 178 -66.98 68.83 REMARK 500 1 LYS A 182 96.62 56.12 REMARK 500 1 ASP A 183 79.31 78.81 REMARK 500 1 ILE A 184 -136.30 -100.67 REMARK 500 1 LEU A 187 161.89 -41.84 REMARK 500 1 GLU A 189 134.59 142.74 REMARK 500 2 MET A 77 -83.67 58.71 REMARK 500 2 SER A 78 106.87 180.00 REMARK 500 2 THR A 79 120.12 62.03 REMARK 500 2 SER A 85 -51.25 -172.25 REMARK 500 2 PRO A 86 164.60 -43.07 REMARK 500 2 ASN A 111 106.44 -59.93 REMARK 500 2 ALA A 127 -80.83 61.49 REMARK 500 2 ASN A 135 49.68 -94.58 REMARK 500 2 ASN A 137 -50.26 -144.56 REMARK 500 2 PHE A 142 159.45 65.06 REMARK 500 2 GLN A 143 -83.20 -161.54 REMARK 500 2 LYS A 153 -7.76 90.09 REMARK 500 2 LYS A 163 80.58 -153.04 REMARK 500 2 GLN A 178 -66.74 73.47 REMARK 500 2 LYS A 182 32.39 39.78 REMARK 500 2 ASP A 183 23.01 -174.40 REMARK 500 2 ILE A 184 -168.73 -65.03 REMARK 500 2 LEU A 187 137.95 -13.03 REMARK 500 3 SER A 78 115.86 63.05 REMARK 500 3 THR A 79 104.71 62.66 REMARK 500 3 GLU A 83 94.87 60.19 REMARK 500 3 SER A 85 174.10 56.73 REMARK 500 3 ALA A 127 -59.74 69.79 REMARK 500 3 ASN A 135 -179.01 99.98 REMARK 500 3 ASN A 137 -45.89 167.65 REMARK 500 3 LYS A 138 -142.30 -179.73 REMARK 500 3 LEU A 141 144.89 -171.88 REMARK 500 3 LYS A 153 6.81 80.20 REMARK 500 3 LYS A 162 153.88 62.06 REMARK 500 3 LEU A 164 86.91 -153.24 REMARK 500 3 GLN A 178 78.62 -10.74 REMARK 500 3 LYS A 182 101.73 51.97 REMARK 500 3 ASP A 183 81.52 83.87 REMARK 500 REMARK 500 THIS ENTRY HAS 245 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30779 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF THE STREPTOCOCCUS PYOGENES NAD+-GLYCOHYDROLASE REMARK 900 TRANSLOCATION DOMAIN DBREF 7JI1 A 38 194 UNP Q9R2Y9 Q9R2Y9_STRPY 38 194 SEQADV 7JI1 GLY A 36 UNP Q9R2Y9 EXPRESSION TAG SEQADV 7JI1 PRO A 37 UNP Q9R2Y9 EXPRESSION TAG SEQRES 1 A 159 GLY PRO VAL SER GLY LYS GLU ASN LYS LYS SER ASP VAL SEQRES 2 A 159 LYS TYR GLU THR THR LYS VAL MET GLU ALA ASN ALA THR SEQRES 3 A 159 SER SER LYS GLU ASP ASN HIS VAL MET HIS THR LEU ASP SEQRES 4 A 159 GLY SER MET SER THR VAL TRP GLU GLU ASN SER PRO GLY SEQRES 5 A 159 GLY GLY VAL GLY GLU VAL LEU SER TYR LYS PHE ALA SER SEQRES 6 A 159 PRO MET HIS ILE GLY ARG ILE LEU ILE VAL ASN GLY ASP SEQRES 7 A 159 THR SER SER LYS GLU ASN TYR TYR LYS LYS ASN ARG ILE SEQRES 8 A 159 ALA LYS ALA ASP VAL LYS TYR TYR ASN GLY ASN LYS LEU SEQRES 9 A 159 VAL LEU PHE GLN LYS ILE GLU LEU GLY ASP THR TYR THR SEQRES 10 A 159 LYS LYS PRO HIS HIS ILE GLU ILE ASP LYS LYS LEU ASP SEQRES 11 A 159 VAL ASP ARG ILE ASP ILE GLU VAL THR GLU VAL HIS GLN SEQRES 12 A 159 GLY GLN ASN LYS ASP ILE LEU ALA LEU SER GLU VAL THR SEQRES 13 A 159 PHE GLY ASN HELIX 1 AA1 PRO A 86 VAL A 90 5 5 HELIX 2 AA2 SER A 116 LYS A 122 1 7 SHEET 1 AA1 4 VAL A 93 TYR A 96 0 SHEET 2 AA1 4 ILE A 169 VAL A 173 -1 O ILE A 171 N LEU A 94 SHEET 3 AA1 4 LYS A 128 TYR A 133 -1 N ASP A 130 O GLU A 172 SHEET 4 AA1 4 LEU A 141 GLU A 146 -1 O ILE A 145 N ALA A 129 SHEET 1 AA2 3 HIS A 156 GLU A 159 0 SHEET 2 AA2 3 ARG A 106 ILE A 109 -1 N ILE A 109 O HIS A 156 SHEET 3 AA2 3 THR A 191 GLY A 193 -1 O THR A 191 N LEU A 108 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1