data_7JJD # _entry.id 7JJD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7JJD pdb_00007jjd 10.2210/pdb7jjd/pdb WWPDB D_1000250942 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7JJD _pdbx_database_status.recvd_initial_deposition_date 2020-07-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pallan, P.S.' 1 ? 'Egli, M.' 2 ? 'Harp, J.M.' 3 0000-0002-9116-5606 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 0006-2960 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 59 _citation.language ? _citation.page_first 4627 _citation.page_last 4637 _citation.title 'Incorporating a Thiophosphate Modification into a Common RNA Tetraloop Motif Causes an Unanticipated Stability Boost.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.0c00685 _citation.pdbx_database_id_PubMed 33275419 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pallan, P.S.' 1 ? primary 'Lybrand, T.P.' 2 0000-0002-2248-104X primary 'Schlegel, M.K.' 3 0000-0002-0127-608X primary 'Harp, J.M.' 4 ? primary 'Jahns, H.' 5 ? primary 'Manoharan, M.' 6 0000-0002-7931-1172 primary 'Egli, M.' 7 0000-0003-4145-356X # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7JJD _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.639 _cell.length_a_esd ? _cell.length_b 29.639 _cell.length_b_esd ? _cell.length_c 76.658 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (27-MER)' 8760.319 1 ? ? ? ? 2 water nat water 18.015 113 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'UGCUCCUAGUACGA(G46)AGGACCGGAGUG' _entity_poly.pdbx_seq_one_letter_code_can UGCUCCUAGUACGAGAGGACCGGAGUG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 C n 1 4 U n 1 5 C n 1 6 C n 1 7 U n 1 8 A n 1 9 G n 1 10 U n 1 11 A n 1 12 C n 1 13 G n 1 14 A n 1 15 G46 n 1 16 A n 1 17 G n 1 18 G n 1 19 A n 1 20 C n 1 21 C n 1 22 G n 1 23 G n 1 24 A n 1 25 G n 1 26 U n 1 27 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 27 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7JJD _struct_ref.pdbx_db_accession 7JJD _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7JJD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7JJD _struct_ref_seq.db_align_beg 2647 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2673 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2647 _struct_ref_seq.pdbx_auth_seq_align_end 2673 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 G46 'RNA linking' n "GUANOSINE-5'-MONOTHIOPHOSPHATE" "5'-O-thiophosphonoguanosine" 'C10 H14 N5 O7 P S' 379.286 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7JJD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Crystallization set-ups were made by mixing 4 uL of 350 uM RNA solution [1 mM Na 2 EDTA (pH 8.0) and 10 mM Tris-HCl (pH 8.0)] with 2 uL of a crystallization buffer composed of 3.0 M ammonium sulfate, 10 mM magnesium chloride, 10 mM manganese chloride, and 50 mM potassium 3-(N-morpholino) propanesulfonic acid (MOPS), pH 7.0 at 18 C. ; _exptl_crystal_grow.pdbx_pH_range 7 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-04-10 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'C(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97857 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97857 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7JJD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.210 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19854 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.200 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.600 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 2.118 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.062 _reflns.pdbx_Rpim_I_all 0.028 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 91157 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.210 1.250 ? ? ? ? ? ? 1912 95.600 ? ? ? ? 0.538 ? ? ? ? ? ? ? ? 3.600 ? 0.916 ? ? 0.629 0.320 ? 1 1 0.764 ? ? 1.250 1.300 ? ? ? ? ? ? 1983 98.500 ? ? ? ? 0.479 ? ? ? ? ? ? ? ? 4.400 ? 1.154 ? ? 0.543 0.253 ? 2 1 0.796 ? ? 1.300 1.360 ? ? ? ? ? ? 1963 99.400 ? ? ? ? 0.401 ? ? ? ? ? ? ? ? 4.600 ? 1.457 ? ? 0.451 0.203 ? 3 1 0.858 ? ? 1.360 1.430 ? ? ? ? ? ? 2006 99.800 ? ? ? ? 0.307 ? ? ? ? ? ? ? ? 4.600 ? 1.652 ? ? 0.346 0.157 ? 4 1 0.904 ? ? 1.430 1.520 ? ? ? ? ? ? 1967 99.500 ? ? ? ? 0.228 ? ? ? ? ? ? ? ? 4.600 ? 2.055 ? ? 0.257 0.117 ? 5 1 0.944 ? ? 1.520 1.640 ? ? ? ? ? ? 2000 99.800 ? ? ? ? 0.144 ? ? ? ? ? ? ? ? 4.500 ? 2.558 ? ? 0.164 0.076 ? 6 1 0.979 ? ? 1.640 1.810 ? ? ? ? ? ? 1975 99.900 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 4.600 ? 2.857 ? ? 0.109 0.051 ? 7 1 0.989 ? ? 1.810 2.070 ? ? ? ? ? ? 2002 100.000 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 4.800 ? 3.066 ? ? 0.087 0.039 ? 8 1 0.991 ? ? 2.070 2.610 ? ? ? ? ? ? 2008 100.000 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 5.000 ? 2.949 ? ? 0.065 0.029 ? 9 1 0.995 ? ? 2.610 50.000 ? ? ? ? ? ? 2038 99.600 ? ? ? ? 0.034 ? ? ? ? ? ? ? ? 5.000 ? 1.970 ? ? 0.038 0.017 ? 10 1 0.999 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 78.310 _refine.B_iso_mean 19.2428 _refine.B_iso_min 11.010 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7JJD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.210 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18798 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.2 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.239 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.173 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ID: 3S7C' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 581 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 694 _refine_hist.d_res_high 1.210 _refine_hist.d_res_low 50 # _struct.entry_id 7JJD _struct.title 'Sarcin-ricin loop with guanosine monothiophosphate residue.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7JJD _struct_keywords.text 'Sarcin-ricin loop, RNA crystal structure, RNA tetraloops, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 14 "O3'" ? ? ? 1_555 A G46 15 P A ? A A 2660 A G46 2661 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? A A 14 "O3'" ? ? ? 1_555 A G46 15 P B ? A A 2660 A G46 2661 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale3 covale one ? A G46 15 "O3'" ? ? ? 1_555 A A 16 P ? ? A G46 2661 A A 2662 1_555 ? ? ? ? ? ? ? 1.603 ? ? hydrog1 hydrog ? ? A G 2 N1 A ? ? 1_555 A U 26 O2 ? ? A G 2648 A U 2672 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 2 N1 B ? ? 1_555 A U 26 O2 ? ? A G 2648 A U 2672 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 O6 A ? ? 1_555 A U 26 N3 ? ? A G 2648 A U 2672 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog4 hydrog ? ? A G 2 O6 B ? ? 1_555 A U 26 N3 ? ? A G 2648 A U 2672 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A C 3 N3 A ? ? 1_555 A G 25 N1 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 B ? ? 1_555 A G 25 N1 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 A ? ? 1_555 A G 25 O6 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 B ? ? 1_555 A G 25 O6 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 A ? ? 1_555 A G 25 N2 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 3 O2 B ? ? 1_555 A G 25 N2 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 24 N1 ? ? A U 2650 A A 2670 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 24 N6 ? ? A U 2650 A A 2670 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 2651 A G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 2651 A G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 2651 A G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 2652 A G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 2652 A G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 2652 A G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 7 O2 ? ? ? 1_555 A C 21 N4 ? ? A U 2653 A C 2667 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog20 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 19 N7 ? ? A U 2656 A A 2665 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 10 O2 ? ? ? 1_555 A A 19 N6 ? ? A U 2656 A A 2665 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 18 N3 ? ? A A 2657 A G 2664 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog23 hydrog ? ? A A 11 N7 ? ? ? 1_555 A G 18 N2 ? ? A A 2657 A G 2664 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 2658 A G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 2658 A G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 2658 A G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N2 ? ? ? 1_555 A A 16 N7 ? ? A G 2659 A A 2662 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 7JJD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.033739 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033739 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013045 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 2647 2647 U URI A . n A 1 2 G 2 2648 2648 G GUA A . n A 1 3 C 3 2649 2649 C CYT A . n A 1 4 U 4 2650 2650 U URI A . n A 1 5 C 5 2651 2651 C CYT A . n A 1 6 C 6 2652 2652 C CYT A . n A 1 7 U 7 2653 2653 U URI A . n A 1 8 A 8 2654 2654 A ADE A . n A 1 9 G 9 2655 2655 G GUA A . n A 1 10 U 10 2656 2656 U URI A . n A 1 11 A 11 2657 2657 A ADE A . n A 1 12 C 12 2658 2658 C CYT A . n A 1 13 G 13 2659 2659 G GUA A . n A 1 14 A 14 2660 2660 A ADE A . n A 1 15 G46 15 2661 2661 G46 GUY A . n A 1 16 A 16 2662 2662 A ADE A . n A 1 17 G 17 2663 2663 G GUA A . n A 1 18 G 18 2664 2664 G GUA A . n A 1 19 A 19 2665 2665 A ADE A . n A 1 20 C 20 2666 2666 C CYT A . n A 1 21 C 21 2667 2667 C CYT A . n A 1 22 G 22 2668 2668 G GUA A . n A 1 23 G 23 2669 2669 G GUA A . n A 1 24 A 24 2670 2670 A ADE A . n A 1 25 G 25 2671 2671 G GUA A . n A 1 26 U 26 2672 2672 U URI A . n A 1 27 G 27 2673 2673 G GUA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2701 202 HOH HOH A . B 2 HOH 2 2702 184 HOH HOH A . B 2 HOH 3 2703 187 HOH HOH A . B 2 HOH 4 2704 171 HOH HOH A . B 2 HOH 5 2705 186 HOH HOH A . B 2 HOH 6 2706 183 HOH HOH A . B 2 HOH 7 2707 175 HOH HOH A . B 2 HOH 8 2708 200 HOH HOH A . B 2 HOH 9 2709 205 HOH HOH A . B 2 HOH 10 2710 118 HOH HOH A . B 2 HOH 11 2711 158 HOH HOH A . B 2 HOH 12 2712 156 HOH HOH A . B 2 HOH 13 2713 181 HOH HOH A . B 2 HOH 14 2714 210 HOH HOH A . B 2 HOH 15 2715 105 HOH HOH A . B 2 HOH 16 2716 160 HOH HOH A . B 2 HOH 17 2717 117 HOH HOH A . B 2 HOH 18 2718 169 HOH HOH A . B 2 HOH 19 2719 125 HOH HOH A . B 2 HOH 20 2720 154 HOH HOH A . B 2 HOH 21 2721 133 HOH HOH A . B 2 HOH 22 2722 145 HOH HOH A . B 2 HOH 23 2723 161 HOH HOH A . B 2 HOH 24 2724 157 HOH HOH A . B 2 HOH 25 2725 179 HOH HOH A . B 2 HOH 26 2726 201 HOH HOH A . B 2 HOH 27 2727 131 HOH HOH A . B 2 HOH 28 2728 121 HOH HOH A . B 2 HOH 29 2729 174 HOH HOH A . B 2 HOH 30 2730 110 HOH HOH A . B 2 HOH 31 2731 120 HOH HOH A . B 2 HOH 32 2732 136 HOH HOH A . B 2 HOH 33 2733 115 HOH HOH A . B 2 HOH 34 2734 163 HOH HOH A . B 2 HOH 35 2735 155 HOH HOH A . B 2 HOH 36 2736 140 HOH HOH A . B 2 HOH 37 2737 185 HOH HOH A . B 2 HOH 38 2738 147 HOH HOH A . B 2 HOH 39 2739 148 HOH HOH A . B 2 HOH 40 2740 113 HOH HOH A . B 2 HOH 41 2741 141 HOH HOH A . B 2 HOH 42 2742 150 HOH HOH A . B 2 HOH 43 2743 149 HOH HOH A . B 2 HOH 44 2744 109 HOH HOH A . B 2 HOH 45 2745 112 HOH HOH A . B 2 HOH 46 2746 211 HOH HOH A . B 2 HOH 47 2747 123 HOH HOH A . B 2 HOH 48 2748 178 HOH HOH A . B 2 HOH 49 2749 130 HOH HOH A . B 2 HOH 50 2750 180 HOH HOH A . B 2 HOH 51 2751 119 HOH HOH A . B 2 HOH 52 2752 151 HOH HOH A . B 2 HOH 53 2753 159 HOH HOH A . B 2 HOH 54 2754 134 HOH HOH A . B 2 HOH 55 2755 191 HOH HOH A . B 2 HOH 56 2756 204 HOH HOH A . B 2 HOH 57 2757 103 HOH HOH A . B 2 HOH 58 2758 114 HOH HOH A . B 2 HOH 59 2759 164 HOH HOH A . B 2 HOH 60 2760 104 HOH HOH A . B 2 HOH 61 2761 106 HOH HOH A . B 2 HOH 62 2762 176 HOH HOH A . B 2 HOH 63 2763 137 HOH HOH A . B 2 HOH 64 2764 132 HOH HOH A . B 2 HOH 65 2765 188 HOH HOH A . B 2 HOH 66 2766 167 HOH HOH A . B 2 HOH 67 2767 124 HOH HOH A . B 2 HOH 68 2768 116 HOH HOH A . B 2 HOH 69 2769 107 HOH HOH A . B 2 HOH 70 2770 102 HOH HOH A . B 2 HOH 71 2771 182 HOH HOH A . B 2 HOH 72 2772 128 HOH HOH A . B 2 HOH 73 2773 170 HOH HOH A . B 2 HOH 74 2774 108 HOH HOH A . B 2 HOH 75 2775 206 HOH HOH A . B 2 HOH 76 2776 101 HOH HOH A . B 2 HOH 77 2777 166 HOH HOH A . B 2 HOH 78 2778 111 HOH HOH A . B 2 HOH 79 2779 162 HOH HOH A . B 2 HOH 80 2780 129 HOH HOH A . B 2 HOH 81 2781 122 HOH HOH A . B 2 HOH 82 2782 173 HOH HOH A . B 2 HOH 83 2783 152 HOH HOH A . B 2 HOH 84 2784 177 HOH HOH A . B 2 HOH 85 2785 139 HOH HOH A . B 2 HOH 86 2786 193 HOH HOH A . B 2 HOH 87 2787 127 HOH HOH A . B 2 HOH 88 2788 165 HOH HOH A . B 2 HOH 89 2789 138 HOH HOH A . B 2 HOH 90 2790 144 HOH HOH A . B 2 HOH 91 2791 126 HOH HOH A . B 2 HOH 92 2792 135 HOH HOH A . B 2 HOH 93 2793 142 HOH HOH A . B 2 HOH 94 2794 207 HOH HOH A . B 2 HOH 95 2795 195 HOH HOH A . B 2 HOH 96 2796 208 HOH HOH A . B 2 HOH 97 2797 143 HOH HOH A . B 2 HOH 98 2798 194 HOH HOH A . B 2 HOH 99 2799 196 HOH HOH A . B 2 HOH 100 2800 198 HOH HOH A . B 2 HOH 101 2801 172 HOH HOH A . B 2 HOH 102 2802 146 HOH HOH A . B 2 HOH 103 2803 209 HOH HOH A . B 2 HOH 104 2804 203 HOH HOH A . B 2 HOH 105 2805 197 HOH HOH A . B 2 HOH 106 2806 212 HOH HOH A . B 2 HOH 107 2807 189 HOH HOH A . B 2 HOH 108 2808 168 HOH HOH A . B 2 HOH 109 2809 190 HOH HOH A . B 2 HOH 110 2810 213 HOH HOH A . B 2 HOH 111 2811 192 HOH HOH A . B 2 HOH 112 2812 199 HOH HOH A . B 2 HOH 113 2813 153 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-12-23 2 'Structure model' 1 1 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 5 # _pdbx_entry_details.entry_id 7JJD _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A U 2647 ? ? N1 A U 2647 ? ? C2 A U 2647 ? ? 125.15 121.00 4.15 0.60 N 2 1 "O4'" A G 2648 ? A "C1'" A G 2648 ? A N9 A G 2648 ? A 112.88 108.50 4.38 0.70 N 3 1 "O5'" A U 2650 ? A "C5'" A U 2650 ? A "C4'" A U 2650 ? A 104.52 109.40 -4.88 0.80 N 4 1 "C5'" A U 2650 ? B "C4'" A U 2650 ? B "O4'" A U 2650 ? ? 116.05 109.80 6.25 0.90 N 5 1 N1 A U 2650 ? ? C2 A U 2650 ? ? O2 A U 2650 ? ? 118.09 122.80 -4.71 0.70 N 6 1 "C5'" A G 2655 ? ? "C4'" A G 2655 ? ? "O4'" A G 2655 ? ? 117.63 109.80 7.83 0.90 N 7 1 "C3'" A G 2655 ? ? "C2'" A G 2655 ? ? "C1'" A G 2655 ? ? 96.10 101.30 -5.20 0.70 N 8 1 C4 A U 2656 ? ? C5 A U 2656 ? ? C6 A U 2656 ? ? 115.54 119.70 -4.16 0.60 N 9 1 C5 A U 2656 ? ? C6 A U 2656 ? ? N1 A U 2656 ? ? 126.93 122.70 4.23 0.50 N 10 1 C4 A C 2658 ? ? C5 A C 2658 ? ? C6 A C 2658 ? ? 114.28 117.40 -3.12 0.50 N 11 1 C5 A C 2658 ? ? C6 A C 2658 ? ? N1 A C 2658 ? ? 124.19 121.00 3.19 0.50 N 12 1 N9 A G 2659 ? ? "C1'" A G 2659 ? ? "C2'" A G 2659 ? ? 104.55 112.00 -7.45 1.10 N 13 1 "O4'" A G 2659 ? ? "C1'" A G 2659 ? ? N9 A G 2659 ? ? 114.84 108.50 6.34 0.70 N 14 1 N1 A A 2662 ? ? C2 A A 2662 ? ? N3 A A 2662 ? ? 125.66 129.30 -3.64 0.50 N 15 1 C4 A A 2662 ? ? C5 A A 2662 ? ? N7 A A 2662 ? ? 113.76 110.70 3.06 0.50 N 16 1 N1 A A 2662 ? ? C6 A A 2662 ? ? N6 A A 2662 ? ? 123.47 118.60 4.87 0.60 N 17 1 "O4'" A G 2663 ? ? "C1'" A G 2663 ? ? N9 A G 2663 ? ? 114.72 108.50 6.22 0.70 N 18 1 C2 A G 2664 ? ? N3 A G 2664 ? ? C4 A G 2664 ? ? 115.16 111.90 3.26 0.50 N 19 1 C5 A G 2664 ? ? C6 A G 2664 ? ? N1 A G 2664 ? ? 114.75 111.50 3.25 0.50 N 20 1 C2 A C 2666 ? ? N3 A C 2666 ? ? C4 A C 2666 ? ? 116.90 119.90 -3.00 0.50 N 21 1 N1 A C 2666 ? ? C2 A C 2666 ? ? O2 A C 2666 ? ? 114.65 118.90 -4.25 0.60 N 22 1 C6 A G 2669 ? ? N1 A G 2669 ? ? C2 A G 2669 ? ? 120.60 125.10 -4.50 0.60 N 23 1 C5 A G 2669 ? ? C6 A G 2669 ? ? N1 A G 2669 ? ? 115.09 111.50 3.59 0.50 N 24 1 "O5'" A G 2671 ? ? "C5'" A G 2671 ? ? "C4'" A G 2671 ? ? 103.94 109.40 -5.46 0.80 N 25 1 "O4'" A G 2671 ? ? "C4'" A G 2671 ? ? "C3'" A G 2671 ? ? 111.61 106.10 5.51 0.80 N 26 1 "C5'" A G 2671 ? ? "C4'" A G 2671 ? ? "C3'" A G 2671 ? ? 106.09 115.20 -9.11 1.40 N 27 1 "C1'" A G 2671 ? ? "O4'" A G 2671 ? ? "C4'" A G 2671 ? ? 105.26 109.70 -4.44 0.70 N 28 1 N3 A G 2671 ? ? C4 A G 2671 ? ? C5 A G 2671 ? ? 132.20 128.60 3.60 0.50 N 29 1 N3 A G 2671 ? ? C4 A G 2671 ? ? N9 A G 2671 ? ? 121.80 126.00 -4.20 0.60 N 30 1 N1 A U 2672 ? ? C2 A U 2672 ? ? N3 A U 2672 ? ? 118.74 114.90 3.84 0.60 N 31 1 C2 A U 2672 ? ? N3 A U 2672 ? ? C4 A U 2672 ? ? 122.60 127.00 -4.40 0.60 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 G46 P P N N 111 G46 O1P O N N 112 G46 S2P S N N 113 G46 O3P O N N 114 G46 "O5'" O N N 115 G46 "C5'" C N N 116 G46 "C4'" C N R 117 G46 "O4'" O N N 118 G46 "C3'" C N S 119 G46 "O3'" O N N 120 G46 "C2'" C N R 121 G46 "C1'" C N R 122 G46 "O2'" O N N 123 G46 N9 N Y N 124 G46 C8 C Y N 125 G46 N7 N Y N 126 G46 C5 C Y N 127 G46 C6 C N N 128 G46 O6 O N N 129 G46 N1 N N N 130 G46 C2 C N N 131 G46 N2 N N N 132 G46 N3 N N N 133 G46 C4 C Y N 134 G46 H1P H N N 135 G46 HS H N N 136 G46 "H5'1" H N N 137 G46 "H5'2" H N N 138 G46 "H4'" H N N 139 G46 "H3'" H N N 140 G46 HA H N N 141 G46 "H2'" H N N 142 G46 "H1'" H N N 143 G46 HB H N N 144 G46 H8 H N N 145 G46 H1 H N N 146 G46 H2N1 H N N 147 G46 H2N2 H N N 148 HOH O O N N 149 HOH H1 H N N 150 HOH H2 H N N 151 U OP3 O N N 152 U P P N N 153 U OP1 O N N 154 U OP2 O N N 155 U "O5'" O N N 156 U "C5'" C N N 157 U "C4'" C N R 158 U "O4'" O N N 159 U "C3'" C N S 160 U "O3'" O N N 161 U "C2'" C N R 162 U "O2'" O N N 163 U "C1'" C N R 164 U N1 N N N 165 U C2 C N N 166 U O2 O N N 167 U N3 N N N 168 U C4 C N N 169 U O4 O N N 170 U C5 C N N 171 U C6 C N N 172 U HOP3 H N N 173 U HOP2 H N N 174 U "H5'" H N N 175 U "H5''" H N N 176 U "H4'" H N N 177 U "H3'" H N N 178 U "HO3'" H N N 179 U "H2'" H N N 180 U "HO2'" H N N 181 U "H1'" H N N 182 U H3 H N N 183 U H5 H N N 184 U H6 H N N 185 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 G46 P O1P sing N N 116 G46 P S2P sing N N 117 G46 P O3P doub N N 118 G46 P "O5'" sing N N 119 G46 O1P H1P sing N N 120 G46 S2P HS sing N N 121 G46 "O5'" "C5'" sing N N 122 G46 "C5'" "C4'" sing N N 123 G46 "C5'" "H5'1" sing N N 124 G46 "C5'" "H5'2" sing N N 125 G46 "C4'" "O4'" sing N N 126 G46 "C4'" "C3'" sing N N 127 G46 "C4'" "H4'" sing N N 128 G46 "O4'" "C1'" sing N N 129 G46 "C3'" "O3'" sing N N 130 G46 "C3'" "C2'" sing N N 131 G46 "C3'" "H3'" sing N N 132 G46 "O3'" HA sing N N 133 G46 "C2'" "C1'" sing N N 134 G46 "C2'" "O2'" sing N N 135 G46 "C2'" "H2'" sing N N 136 G46 "C1'" N9 sing N N 137 G46 "C1'" "H1'" sing N N 138 G46 "O2'" HB sing N N 139 G46 N9 C8 sing Y N 140 G46 N9 C4 sing Y N 141 G46 C8 N7 doub Y N 142 G46 C8 H8 sing N N 143 G46 N7 C5 sing Y N 144 G46 C5 C6 sing N N 145 G46 C5 C4 doub Y N 146 G46 C6 O6 doub N N 147 G46 C6 N1 sing N N 148 G46 N1 C2 sing N N 149 G46 N1 H1 sing N N 150 G46 C2 N2 sing N N 151 G46 C2 N3 doub N N 152 G46 N2 H2N1 sing N N 153 G46 N2 H2N2 sing N N 154 G46 N3 C4 sing N N 155 HOH O H1 sing N N 156 HOH O H2 sing N N 157 U OP3 P sing N N 158 U OP3 HOP3 sing N N 159 U P OP1 doub N N 160 U P OP2 sing N N 161 U P "O5'" sing N N 162 U OP2 HOP2 sing N N 163 U "O5'" "C5'" sing N N 164 U "C5'" "C4'" sing N N 165 U "C5'" "H5'" sing N N 166 U "C5'" "H5''" sing N N 167 U "C4'" "O4'" sing N N 168 U "C4'" "C3'" sing N N 169 U "C4'" "H4'" sing N N 170 U "O4'" "C1'" sing N N 171 U "C3'" "O3'" sing N N 172 U "C3'" "C2'" sing N N 173 U "C3'" "H3'" sing N N 174 U "O3'" "HO3'" sing N N 175 U "C2'" "O2'" sing N N 176 U "C2'" "C1'" sing N N 177 U "C2'" "H2'" sing N N 178 U "O2'" "HO2'" sing N N 179 U "C1'" N1 sing N N 180 U "C1'" "H1'" sing N N 181 U N1 C2 sing N N 182 U N1 C6 sing N N 183 U C2 O2 doub N N 184 U C2 N3 sing N N 185 U N3 C4 sing N N 186 U N3 H3 sing N N 187 U C4 O4 doub N N 188 U C4 C5 sing N N 189 U C5 C6 doub N N 190 U C5 H5 sing N N 191 U C6 H6 sing N N 192 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7JJD 'double helix' 7JJD 'a-form double helix' 7JJD 'hairpin loop' 7JJD 'mismatched base pair' 7JJD 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A U 26 1_555 -2.175 -0.335 0.248 3.723 -9.240 0.606 1 A_G2648:U2672_A A 2648 ? A 2672 ? 28 1 1 A C 3 1_555 A G 25 1_555 0.236 -0.269 0.179 8.214 -19.424 -2.297 2 A_C2649:G2671_A A 2649 ? A 2671 ? 19 1 1 A U 4 1_555 A A 24 1_555 -0.121 -0.001 -0.024 7.279 -12.949 -1.410 3 A_U2650:A2670_A A 2650 ? A 2670 ? 20 1 1 A C 5 1_555 A G 23 1_555 0.179 -0.152 0.072 5.723 -17.830 1.024 4 A_C2651:G2669_A A 2651 ? A 2669 ? 19 1 1 A C 6 1_555 A G 22 1_555 0.296 -0.123 0.088 -4.675 -11.005 -2.501 5 A_C2652:G2668_A A 2652 ? A 2668 ? 19 1 1 A U 7 1_555 A C 21 1_555 5.837 -2.187 -0.223 -3.286 -13.113 -13.385 6 A_U2653:C2667_A A 2653 ? A 2667 ? ? ? 1 A U 10 1_555 A A 19 1_555 4.044 -1.754 -0.807 6.649 -20.294 -103.032 7 A_U2656:A2665_A A 2656 ? A 2665 ? 24 4 1 A A 11 1_555 A G 18 1_555 -6.818 -4.370 -0.107 -1.423 5.325 -2.383 8 A_A2657:G2664_A A 2657 ? A 2664 ? 11 9 1 A C 12 1_555 A G 17 1_555 0.120 -0.098 -0.231 8.058 -1.216 0.438 9 A_C2658:G2663_A A 2658 ? A 2663 ? 19 1 1 A G 13 1_555 A A 16 1_555 7.267 -5.323 0.786 18.950 -3.667 -20.042 10 A_G2659:A2662_A A 2659 ? A 2662 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A U 26 1_555 A C 3 1_555 A G 25 1_555 -0.006 -1.151 3.104 -0.494 3.381 41.346 -1.961 -0.041 3.004 4.779 0.699 41.481 1 AA_G2648C2649:G2671U2672_AA A 2648 ? A 2672 ? A 2649 ? A 2671 ? 1 A C 3 1_555 A G 25 1_555 A U 4 1_555 A A 24 1_555 -0.476 -1.615 3.156 -2.390 7.924 29.324 -4.514 0.473 2.668 15.274 4.606 30.445 2 AA_C2649U2650:A2670G2671_AA A 2649 ? A 2671 ? A 2650 ? A 2670 ? 1 A U 4 1_555 A A 24 1_555 A C 5 1_555 A G 23 1_555 0.578 -1.393 3.179 -0.907 4.790 36.032 -2.862 -1.046 2.961 7.699 1.458 36.350 3 AA_U2650C2651:G2669A2670_AA A 2650 ? A 2670 ? A 2651 ? A 2669 ? 1 A C 5 1_555 A G 23 1_555 A C 6 1_555 A G 22 1_555 -0.631 -1.966 3.384 0.025 8.359 33.019 -4.642 1.082 2.816 14.420 -0.043 34.032 4 AA_C2651C2652:G2668G2669_AA A 2651 ? A 2669 ? A 2652 ? A 2668 ? 1 A C 6 1_555 A G 22 1_555 A U 7 1_555 A C 21 1_555 -0.571 -1.036 3.432 7.279 8.608 54.209 -1.632 1.051 3.151 9.333 -7.892 55.282 5 AA_C2652U2653:C2667G2668_AA A 2652 ? A 2668 ? A 2653 ? A 2667 ? 1 A U 7 1_555 A C 21 1_555 A U 10 1_555 A A 19 1_555 0.510 -0.888 6.255 5.427 -4.002 31.659 -0.220 0.948 6.315 -7.232 -9.808 32.351 6 AA_U2653U2656:A2665C2667_AA A 2653 ? A 2667 ? A 2656 ? A 2665 ? 1 A U 10 1_555 A A 19 1_555 A A 11 1_555 A G 18 1_555 5.192 -1.337 3.579 -2.125 -1.614 -10.959 9.688 22.615 4.263 8.290 -10.918 -11.278 7 AA_U2656A2657:G2664A2665_AA A 2656 ? A 2665 ? A 2657 ? A 2664 ? 1 A A 11 1_555 A G 18 1_555 A C 12 1_555 A G 17 1_555 0.060 -1.159 3.152 -1.819 3.582 59.695 -1.332 -0.147 3.081 3.594 1.825 59.818 8 AA_A2657C2658:G2663G2664_AA A 2657 ? A 2664 ? A 2658 ? A 2663 ? 1 A C 12 1_555 A G 17 1_555 A G 13 1_555 A A 16 1_555 -2.776 -1.345 2.974 -7.707 7.248 50.406 -2.018 2.701 3.130 8.404 8.936 51.433 9 AA_C2658G2659:A2662G2663_AA A 2658 ? A 2663 ? A 2659 ? A 2662 ? # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id G46 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id G46 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3S7C _pdbx_initial_refinement_model.details 'PDB ID: 3S7C' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #