HEADER HYDROLASE 27-JUL-20 7JJN TITLE EUBACTERIUM RECTALE AMY13B (EUR_01860) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDASES; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: [EUBACTERIUM] RECTALE DSM 17629; SOURCE 3 ORGANISM_TAXID: 657318; SOURCE 4 ATCC: 17629; SOURCE 5 GENE: EUR_01860; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA II; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETITE NHIS KEYWDS MALTOGENIC AMYLASE, GH13_16, GH13, AMYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.M.KOROPATKIN,D.W.COCKBURN,F.M.CERQUEIRA REVDAT 2 18-OCT-23 7JJN 1 REMARK REVDAT 1 23-JUN-21 7JJN 0 JRNL AUTH D.W.COCKBURN,F.M.CERQUEIRA,C.M.E.BAHR,N.M.KOROPATKIN JRNL TITL THE STRUCTURES OF THE GH13_36 AMYLASES FROM EUBACTERIUM JRNL TITL 2 RECTALE AND RUMINOCOCCUS BROMII REVEAL SUBSITE ARCHITECTURES JRNL TITL 3 THAT FAVOR MALTOSE PRODUCTION JRNL REF AMYLASE V. 4 24 2020 JRNL REFN ESSN 2450-9728 JRNL DOI 10.1515/AMYLASE-2020-0003 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 52665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 239 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 543 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.264 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.678 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8431 ; 0.006 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 7139 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11437 ; 1.108 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16771 ; 0.839 ; 1.661 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1019 ; 6.402 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 463 ;37.077 ;24.644 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1358 ;14.481 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.890 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1102 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9536 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1628 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4537 38.8336 11.0730 REMARK 3 T TENSOR REMARK 3 T11: 0.0332 T22: 0.0462 REMARK 3 T33: 0.0055 T12: -0.0307 REMARK 3 T13: 0.0059 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.7259 L22: 0.5233 REMARK 3 L33: 0.8149 L12: -0.2576 REMARK 3 L13: -0.5343 L23: 0.0414 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.0230 S13: -0.0143 REMARK 3 S21: -0.0432 S22: -0.0314 S23: -0.0339 REMARK 3 S31: -0.0497 S32: 0.0044 S33: 0.0197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 701 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0485 4.5812 25.1626 REMARK 3 T TENSOR REMARK 3 T11: 0.0171 T22: 0.0802 REMARK 3 T33: 0.0285 T12: -0.0048 REMARK 3 T13: 0.0063 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 1.3692 L22: 0.8901 REMARK 3 L33: 1.3492 L12: -0.4218 REMARK 3 L13: -0.5496 L23: 0.4016 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.1009 S13: 0.0321 REMARK 3 S21: -0.0224 S22: 0.0040 S23: -0.0505 REMARK 3 S31: -0.1308 S32: 0.0973 S33: -0.0065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7JJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55448 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 38.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WZA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17M AM SULFATE, 25.5% PEG 4000, 15% REMARK 280 GLYCEROL (JCSG+ SCREEN, MOLECULAR DIMENSIONS), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.38000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 GLY A 44 REMARK 465 LYS A 45 REMARK 465 ASN A 46 REMARK 465 THR A 47 REMARK 465 GLU A 48 REMARK 465 THR A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 LYS A 52 REMARK 465 LYS A 53 REMARK 465 GLU A 54 REMARK 465 GLY B 43 REMARK 465 GLY B 44 REMARK 465 LYS B 45 REMARK 465 ASN B 46 REMARK 465 THR B 47 REMARK 465 GLU B 48 REMARK 465 THR B 49 REMARK 465 ALA B 50 REMARK 465 ALA B 51 REMARK 465 LYS B 52 REMARK 465 LYS B 53 REMARK 465 GLU B 54 REMARK 465 PRO B 189 REMARK 465 ASP B 190 REMARK 465 GLY B 191 REMARK 465 ALA B 192 REMARK 465 SER B 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 436 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 106 NH1 ARG B 158 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 -160.00 -138.40 REMARK 500 PHE A 87 -82.14 -92.72 REMARK 500 LYS A 129 21.45 82.19 REMARK 500 ALA A 192 -139.27 72.28 REMARK 500 GLU A 193 102.32 59.53 REMARK 500 THR A 212 -161.89 -65.58 REMARK 500 SER A 227 67.57 -158.30 REMARK 500 ASN A 272 -110.63 67.07 REMARK 500 GLN A 327 172.35 75.48 REMARK 500 ALA A 368 77.62 -118.72 REMARK 500 PHE A 370 -36.00 -142.37 REMARK 500 TYR A 371 -52.93 71.55 REMARK 500 ASN A 387 48.18 39.92 REMARK 500 THR A 419 -19.62 -150.33 REMARK 500 ASN A 497 -155.23 -146.96 REMARK 500 PHE B 87 -77.96 -86.91 REMARK 500 LYS B 129 22.71 84.53 REMARK 500 ASP B 134 114.38 -161.03 REMARK 500 ASN B 211 121.66 83.34 REMARK 500 SER B 227 70.00 -161.87 REMARK 500 ASN B 272 -86.58 7.43 REMARK 500 GLN B 327 177.53 73.28 REMARK 500 PHE B 370 -36.45 -141.52 REMARK 500 TYR B 371 -55.86 77.37 REMARK 500 ASN B 387 7.68 83.78 REMARK 500 THR B 419 -14.43 -158.89 REMARK 500 ASN B 497 -151.33 -151.69 REMARK 500 TYR B 558 62.94 62.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 478 0.09 SIDE CHAIN REMARK 500 ARG A 505 0.08 SIDE CHAIN REMARK 500 ARG B 478 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 89 OD1 REMARK 620 2 ASP A 91 OD1 75.7 REMARK 620 3 ASP A 93 OD1 81.2 87.0 REMARK 620 4 ILE A 95 O 82.9 157.4 82.7 REMARK 620 5 ASP A 97 OD2 87.9 93.8 168.5 92.5 REMARK 620 6 HOH A 725 O 168.8 110.8 89.9 89.2 100.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 89 OD1 REMARK 620 2 ASP B 91 OD1 80.7 REMARK 620 3 ASP B 93 OD1 78.0 85.3 REMARK 620 4 ILE B 95 O 73.1 153.3 84.2 REMARK 620 5 ASP B 97 OD2 92.0 89.5 169.3 96.5 REMARK 620 6 HOH B 724 O 170.4 95.3 93.0 109.7 96.7 REMARK 620 N 1 2 3 4 5 DBREF 7JJN A 43 564 UNP D6E1Y4 D6E1Y4_9FIRM 43 564 DBREF 7JJN B 43 564 UNP D6E1Y4 D6E1Y4_9FIRM 43 564 SEQADV 7JJN ALA A 265 UNP D6E1Y4 ASP 265 ENGINEERED MUTATION SEQADV 7JJN ALA A 543 UNP D6E1Y4 LYS 543 ENGINEERED MUTATION SEQADV 7JJN ALA A 544 UNP D6E1Y4 LYS 544 ENGINEERED MUTATION SEQADV 7JJN GLU A 565 UNP D6E1Y4 EXPRESSION TAG SEQADV 7JJN ASN A 566 UNP D6E1Y4 EXPRESSION TAG SEQADV 7JJN LEU A 567 UNP D6E1Y4 EXPRESSION TAG SEQADV 7JJN TYR A 568 UNP D6E1Y4 EXPRESSION TAG SEQADV 7JJN ALA B 265 UNP D6E1Y4 ASP 265 ENGINEERED MUTATION SEQADV 7JJN ALA B 543 UNP D6E1Y4 LYS 543 ENGINEERED MUTATION SEQADV 7JJN ALA B 544 UNP D6E1Y4 LYS 544 ENGINEERED MUTATION SEQADV 7JJN GLU B 565 UNP D6E1Y4 EXPRESSION TAG SEQADV 7JJN ASN B 566 UNP D6E1Y4 EXPRESSION TAG SEQADV 7JJN LEU B 567 UNP D6E1Y4 EXPRESSION TAG SEQADV 7JJN TYR B 568 UNP D6E1Y4 EXPRESSION TAG SEQRES 1 A 526 GLY GLY LYS ASN THR GLU THR ALA ALA LYS LYS GLU TYR SEQRES 2 A 526 LYS PRO SER ALA MET GLU GLN MET ASN ALA LYS ASN ASP SEQRES 3 A 526 PRO ASN VAL ILE GLN ASP ASN TYR ARG THR CYS TYR GLU SEQRES 4 A 526 VAL PHE VAL TYR SER PHE PHE ASP SER ASP GLY ASP GLY SEQRES 5 A 526 ILE GLY ASP LEU LYS GLY LEU THR GLU LYS LEU ASP TYR SEQRES 6 A 526 ILE GLU GLY LEU GLY CYS ASN GLU ILE TRP MET MET PRO SEQRES 7 A 526 ILE MET PRO SER PRO SER TYR HIS LYS TYR ASP ILE THR SEQRES 8 A 526 ASP TYR MET ASN ILE ASP LYS GLN TYR GLY THR LEU ASP SEQRES 9 A 526 ASP PHE ASP ALA LEU ILE THR GLU CYS HIS LYS ARG ASN SEQRES 10 A 526 ILE ASN VAL ILE ILE ASP PHE VAL ILE ASN HIS THR SER SEQRES 11 A 526 ASN GLU HIS PRO TRP PHE LYS ALA ALA ALA ASP TYR ILE SEQRES 12 A 526 LYS SER LEU PRO ASP GLY ALA GLU PRO ASP SER SER GLU SEQRES 13 A 526 CYS PRO TYR VAL ASP TYR TYR ASN PHE SER LYS THR ASN SEQRES 14 A 526 THR GLY GLY TYR ASN GLN LEU PRO GLY THR ASN TRP TYR SEQRES 15 A 526 TYR GLU SER GLN PHE VAL ASP SER MET PRO ASP LEU ASN SEQRES 16 A 526 LEU GLN SER GLU ALA VAL ARG GLY GLU ILE ASP LYS VAL SEQRES 17 A 526 THR SER PHE TRP LEU ASP ARG GLY VAL ASP GLY PHE ARG SEQRES 18 A 526 LEU ALA ALA VAL ILE TYR TYR ASN ASN ASN ASN GLN THR SEQRES 19 A 526 GLU THR ILE ASP ASP LEU THR TRP LEU VAL ASN ASN VAL SEQRES 20 A 526 LYS SER LYS LYS ALA ASP ALA TYR MET VAL GLY GLU GLY SEQRES 21 A 526 TRP THR THR TYR ARG GLU TYR ALA LYS TYR TYR LYS SER SEQRES 22 A 526 GLY ILE ASP SER MET PHE ASN PHE ASP PHE SER GLN GLN SEQRES 23 A 526 ASP GLY TYR ILE GLY LYS VAL LEU ASN GLY ALA ALA ASN SEQRES 24 A 526 HIS GLY ALA SER THR TYR GLY ASN ALA LEU VAL ASP VAL SEQRES 25 A 526 GLU ASN GLU ILE LYS LYS TYR THR ASP SER TYR ILE ASP SEQRES 26 A 526 ALA PRO PHE TYR THR ASN HIS ASP MET GLY ARG SER ALA SEQRES 27 A 526 GLY TYR TYR ASN GLY ASP ASN ALA GLU GLU LYS THR LYS SEQRES 28 A 526 MET ALA GLN ALA MET ASN LEU LEU MET PRO GLY ASN ALA SEQRES 29 A 526 PHE LEU TYR TYR GLY GLU GLU ILE GLY MET ARG GLY THR SEQRES 30 A 526 ALA ASN ASP GLU THR LYS ARG LEU ALA MET ARG TRP SER SEQRES 31 A 526 GLY ASP SER LYS ALA LYS GLY MET CYS VAL GLY PRO GLN SEQRES 32 A 526 ASN ALA GLU GLU THR GLU GLN THR TYR ASP THR LEU ASP SEQRES 33 A 526 LYS GLN MET GLU ASP PRO TYR SER ILE TYR ASN PHE VAL SEQRES 34 A 526 LYS GLN THR ILE SER ILE ARG ASN ALA PHE PRO GLU ILE SEQRES 35 A 526 ALA ARG GLY THR ASN THR PHE GLU LYS ASP LEU SER ASN SEQRES 36 A 526 ASP ASN VAL CYS ILE PHE THR ARG GLU TYR ASN GLY GLU SEQRES 37 A 526 LYS ALA VAL LEU ILE PHE ASN PRO SER LYS ASP GLU ALA SEQRES 38 A 526 SER VAL ASP VAL SER SER LEU GLY VAL ASN ASP ALA VAL SEQRES 39 A 526 ALA MET LEU GLN THR THR ALA ALA ALA PRO SER TYR LYS SEQRES 40 A 526 ASP GLY THR ALA LYS LEU PRO ALA TYR SER VAL LEU VAL SEQRES 41 A 526 LEU LYS GLU ASN LEU TYR SEQRES 1 B 526 GLY GLY LYS ASN THR GLU THR ALA ALA LYS LYS GLU TYR SEQRES 2 B 526 LYS PRO SER ALA MET GLU GLN MET ASN ALA LYS ASN ASP SEQRES 3 B 526 PRO ASN VAL ILE GLN ASP ASN TYR ARG THR CYS TYR GLU SEQRES 4 B 526 VAL PHE VAL TYR SER PHE PHE ASP SER ASP GLY ASP GLY SEQRES 5 B 526 ILE GLY ASP LEU LYS GLY LEU THR GLU LYS LEU ASP TYR SEQRES 6 B 526 ILE GLU GLY LEU GLY CYS ASN GLU ILE TRP MET MET PRO SEQRES 7 B 526 ILE MET PRO SER PRO SER TYR HIS LYS TYR ASP ILE THR SEQRES 8 B 526 ASP TYR MET ASN ILE ASP LYS GLN TYR GLY THR LEU ASP SEQRES 9 B 526 ASP PHE ASP ALA LEU ILE THR GLU CYS HIS LYS ARG ASN SEQRES 10 B 526 ILE ASN VAL ILE ILE ASP PHE VAL ILE ASN HIS THR SER SEQRES 11 B 526 ASN GLU HIS PRO TRP PHE LYS ALA ALA ALA ASP TYR ILE SEQRES 12 B 526 LYS SER LEU PRO ASP GLY ALA GLU PRO ASP SER SER GLU SEQRES 13 B 526 CYS PRO TYR VAL ASP TYR TYR ASN PHE SER LYS THR ASN SEQRES 14 B 526 THR GLY GLY TYR ASN GLN LEU PRO GLY THR ASN TRP TYR SEQRES 15 B 526 TYR GLU SER GLN PHE VAL ASP SER MET PRO ASP LEU ASN SEQRES 16 B 526 LEU GLN SER GLU ALA VAL ARG GLY GLU ILE ASP LYS VAL SEQRES 17 B 526 THR SER PHE TRP LEU ASP ARG GLY VAL ASP GLY PHE ARG SEQRES 18 B 526 LEU ALA ALA VAL ILE TYR TYR ASN ASN ASN ASN GLN THR SEQRES 19 B 526 GLU THR ILE ASP ASP LEU THR TRP LEU VAL ASN ASN VAL SEQRES 20 B 526 LYS SER LYS LYS ALA ASP ALA TYR MET VAL GLY GLU GLY SEQRES 21 B 526 TRP THR THR TYR ARG GLU TYR ALA LYS TYR TYR LYS SER SEQRES 22 B 526 GLY ILE ASP SER MET PHE ASN PHE ASP PHE SER GLN GLN SEQRES 23 B 526 ASP GLY TYR ILE GLY LYS VAL LEU ASN GLY ALA ALA ASN SEQRES 24 B 526 HIS GLY ALA SER THR TYR GLY ASN ALA LEU VAL ASP VAL SEQRES 25 B 526 GLU ASN GLU ILE LYS LYS TYR THR ASP SER TYR ILE ASP SEQRES 26 B 526 ALA PRO PHE TYR THR ASN HIS ASP MET GLY ARG SER ALA SEQRES 27 B 526 GLY TYR TYR ASN GLY ASP ASN ALA GLU GLU LYS THR LYS SEQRES 28 B 526 MET ALA GLN ALA MET ASN LEU LEU MET PRO GLY ASN ALA SEQRES 29 B 526 PHE LEU TYR TYR GLY GLU GLU ILE GLY MET ARG GLY THR SEQRES 30 B 526 ALA ASN ASP GLU THR LYS ARG LEU ALA MET ARG TRP SER SEQRES 31 B 526 GLY ASP SER LYS ALA LYS GLY MET CYS VAL GLY PRO GLN SEQRES 32 B 526 ASN ALA GLU GLU THR GLU GLN THR TYR ASP THR LEU ASP SEQRES 33 B 526 LYS GLN MET GLU ASP PRO TYR SER ILE TYR ASN PHE VAL SEQRES 34 B 526 LYS GLN THR ILE SER ILE ARG ASN ALA PHE PRO GLU ILE SEQRES 35 B 526 ALA ARG GLY THR ASN THR PHE GLU LYS ASP LEU SER ASN SEQRES 36 B 526 ASP ASN VAL CYS ILE PHE THR ARG GLU TYR ASN GLY GLU SEQRES 37 B 526 LYS ALA VAL LEU ILE PHE ASN PRO SER LYS ASP GLU ALA SEQRES 38 B 526 SER VAL ASP VAL SER SER LEU GLY VAL ASN ASP ALA VAL SEQRES 39 B 526 ALA MET LEU GLN THR THR ALA ALA ALA PRO SER TYR LYS SEQRES 40 B 526 ASP GLY THR ALA LYS LEU PRO ALA TYR SER VAL LEU VAL SEQRES 41 B 526 LEU LYS GLU ASN LEU TYR HET BGC D 1 12 HET GLC D 2 11 HET GLC D 3 11 HET BGC E 1 12 HET GLC E 2 11 HET GLC E 3 11 HET EDO A 601 4 HET GOL A 602 6 HET CA A 603 1 HET SO4 A 604 5 HET EDO B 601 4 HET GOL B 602 6 HET CA B 603 1 HET SO4 B 604 5 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BGC 2(C6 H12 O6) FORMUL 3 GLC 4(C6 H12 O6) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 CA 2(CA 2+) FORMUL 8 SO4 2(O4 S 2-) FORMUL 13 HOH *543(H2 O) HELIX 1 AA1 SER A 58 ALA A 65 1 8 HELIX 2 AA2 PHE A 83 PHE A 87 5 5 HELIX 3 AA3 ASP A 97 LYS A 104 1 8 HELIX 4 AA4 LYS A 104 GLY A 112 1 9 HELIX 5 AA5 THR A 144 ARG A 158 1 15 HELIX 6 AA6 HIS A 175 LEU A 188 1 14 HELIX 7 AA7 CYS A 199 TYR A 204 5 6 HELIX 8 AA8 SER A 240 ARG A 257 1 18 HELIX 9 AA9 ALA A 266 TYR A 270 5 5 HELIX 10 AB1 ASN A 274 LYS A 293 1 20 HELIX 11 AB2 THR A 305 ALA A 310 1 6 HELIX 12 AB3 LYS A 311 GLY A 316 5 6 HELIX 13 AB4 ASN A 322 SER A 326 5 5 HELIX 14 AB5 GLY A 330 ASN A 337 1 8 HELIX 15 AB6 GLY A 343 LYS A 360 1 18 HELIX 16 AB7 ARG A 378 TYR A 383 5 6 HELIX 17 AB8 ASN A 387 LEU A 401 1 15 HELIX 18 AB9 GLY A 411 GLY A 415 5 5 HELIX 19 AC1 ASP A 422 LEU A 427 5 6 HELIX 20 AC2 THR A 456 GLU A 462 1 7 HELIX 21 AC3 SER A 466 PHE A 481 1 16 HELIX 22 AC4 PHE A 481 GLY A 487 1 7 HELIX 23 AC5 LYS A 493 SER A 496 5 4 HELIX 24 AC6 SER A 528 GLY A 531 5 4 HELIX 25 AC7 SER B 58 ALA B 65 1 8 HELIX 26 AC8 PHE B 83 PHE B 88 1 6 HELIX 27 AC9 ASP B 97 GLU B 103 1 7 HELIX 28 AD1 LYS B 104 GLY B 112 1 9 HELIX 29 AD2 ASP B 139 GLY B 143 5 5 HELIX 30 AD3 THR B 144 ARG B 158 1 15 HELIX 31 AD4 HIS B 175 SER B 187 1 13 HELIX 32 AD5 CYS B 199 TYR B 204 5 6 HELIX 33 AD6 SER B 240 ASP B 256 1 17 HELIX 34 AD7 ALA B 266 TYR B 270 5 5 HELIX 35 AD8 ASN B 274 SER B 291 1 18 HELIX 36 AD9 THR B 305 ALA B 310 1 6 HELIX 37 AE1 LYS B 311 GLY B 316 5 6 HELIX 38 AE2 ASN B 322 SER B 326 5 5 HELIX 39 AE3 GLY B 330 ASN B 337 1 8 HELIX 40 AE4 GLY B 343 LYS B 359 1 17 HELIX 41 AE5 ARG B 378 TYR B 383 5 6 HELIX 42 AE6 ASN B 387 LEU B 401 1 15 HELIX 43 AE7 GLY B 411 GLY B 415 5 5 HELIX 44 AE8 ASN B 421 LEU B 427 5 7 HELIX 45 AE9 THR B 456 GLU B 462 1 7 HELIX 46 AF1 SER B 466 PHE B 481 1 16 HELIX 47 AF2 PRO B 482 GLY B 487 1 6 HELIX 48 AF3 LYS B 493 SER B 496 5 4 HELIX 49 AF4 SER B 528 GLY B 531 5 4 SHEET 1 AA1 7 SER A 319 MET A 320 0 SHEET 2 AA1 7 TYR A 297 GLY A 300 1 N GLY A 300 O SER A 319 SHEET 3 AA1 7 GLY A 261 LEU A 264 1 N LEU A 264 O VAL A 299 SHEET 4 AA1 7 ASN A 161 PHE A 166 1 N PHE A 166 O ARG A 263 SHEET 5 AA1 7 GLU A 115 MET A 118 1 N ILE A 116 O ILE A 163 SHEET 6 AA1 7 THR A 78 VAL A 82 1 N VAL A 82 O TRP A 117 SHEET 7 AA1 7 ALA A 406 TYR A 409 1 O ALA A 406 N CYS A 79 SHEET 1 AA2 3 PHE A 207 SER A 208 0 SHEET 2 AA2 3 TYR A 224 GLU A 226 -1 O TYR A 224 N SER A 208 SHEET 3 AA2 3 TYR A 215 GLN A 217 -1 N ASN A 216 O TYR A 225 SHEET 1 AA3 5 THR A 488 PHE A 491 0 SHEET 2 AA3 5 CYS A 501 TYR A 507 -1 O GLU A 506 N THR A 488 SHEET 3 AA3 5 GLU A 510 ASN A 517 -1 O PHE A 516 N CYS A 501 SHEET 4 AA3 5 SER A 559 ASN A 566 -1 O LEU A 561 N ILE A 515 SHEET 5 AA3 5 VAL A 532 GLN A 540 -1 N ALA A 537 O VAL A 562 SHEET 1 AA4 3 ALA A 523 ASP A 526 0 SHEET 2 AA4 3 THR A 552 LEU A 555 -1 O LEU A 555 N ALA A 523 SHEET 3 AA4 3 SER A 547 LYS A 549 -1 N SER A 547 O LYS A 554 SHEET 1 AA5 7 SER B 319 MET B 320 0 SHEET 2 AA5 7 TYR B 297 GLY B 300 1 N GLY B 300 O SER B 319 SHEET 3 AA5 7 GLY B 261 LEU B 264 1 N LEU B 264 O VAL B 299 SHEET 4 AA5 7 ASN B 161 PHE B 166 1 N PHE B 166 O ARG B 263 SHEET 5 AA5 7 GLU B 115 MET B 118 1 N ILE B 116 O ILE B 163 SHEET 6 AA5 7 THR B 78 VAL B 82 1 N VAL B 82 O TRP B 117 SHEET 7 AA5 7 ALA B 406 TYR B 409 1 O ALA B 406 N CYS B 79 SHEET 1 AA6 3 PHE B 207 SER B 208 0 SHEET 2 AA6 3 TYR B 224 GLU B 226 -1 O TYR B 224 N SER B 208 SHEET 3 AA6 3 TYR B 215 GLN B 217 -1 N ASN B 216 O TYR B 225 SHEET 1 AA7 5 THR B 488 PHE B 491 0 SHEET 2 AA7 5 CYS B 501 TYR B 507 -1 O GLU B 506 N THR B 488 SHEET 3 AA7 5 GLU B 510 ASN B 517 -1 O ALA B 512 N ARG B 505 SHEET 4 AA7 5 SER B 559 GLU B 565 -1 O LEU B 561 N ILE B 515 SHEET 5 AA7 5 ASN B 533 GLN B 540 -1 N ALA B 537 O VAL B 562 SHEET 1 AA8 3 ALA B 523 ASP B 526 0 SHEET 2 AA8 3 THR B 552 LEU B 555 -1 O LEU B 555 N ALA B 523 SHEET 3 AA8 3 SER B 547 LYS B 549 -1 N SER B 547 O LYS B 554 LINK O4 BGC D 1 C1 GLC D 2 1555 1555 1.44 LINK O4 GLC D 2 C1 GLC D 3 1555 1555 1.44 LINK O4 BGC E 1 C1 GLC E 2 1555 1555 1.45 LINK O4 GLC E 2 C1 GLC E 3 1555 1555 1.45 LINK OD1 ASP A 89 CA CA A 603 1555 1555 2.31 LINK OD1 ASP A 91 CA CA A 603 1555 1555 2.40 LINK OD1 ASP A 93 CA CA A 603 1555 1555 2.39 LINK O ILE A 95 CA CA A 603 1555 1555 2.26 LINK OD2 ASP A 97 CA CA A 603 1555 1555 2.43 LINK CA CA A 603 O HOH A 725 1555 1555 2.21 LINK OD1 ASP B 89 CA CA B 603 1555 1555 2.23 LINK OD1 ASP B 91 CA CA B 603 1555 1555 2.35 LINK OD1 ASP B 93 CA CA B 603 1555 1555 2.51 LINK O ILE B 95 CA CA B 603 1555 1555 2.29 LINK OD2 ASP B 97 CA CA B 603 1555 1555 2.41 LINK CA CA B 603 O HOH B 724 1555 1555 2.31 CRYST1 84.180 82.760 85.860 90.00 92.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011879 0.000000 0.000593 0.00000 SCALE2 0.000000 0.012083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011661 0.00000