HEADER TRANSFERASE/DNA 29-JUL-20 7JL8 TITLE HUMAN PRIMPOL EXTENDING FROM THE CORRECT PRIMER BASE C OPPOSITE THE 8- TITLE 2 OXOGUANINE LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-DIRECTED PRIMASE/POLYMERASE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HPRIMPOL1,COILED-COIL DOMAIN-CONTAINING PROTEIN 111; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*AP*TP*(8OG)P*CP*CP*TP*AP*CP*CP*AP*CP*A)-3'); COMPND 9 CHAIN: C, G; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*GP*TP*GP*GP*TP*AP*GP*GP*C)-3'); COMPND 13 CHAIN: D, H; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRIMPOL, CCDC111; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS TRANSLESION, DNA SYNTHESIS, DNA REPLICATION, DNA DAMAGE, TRANSFERASE, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,A.K.AGGARWAL REVDAT 3 18-OCT-23 7JL8 1 REMARK REVDAT 2 14-JUL-21 7JL8 1 JRNL REVDAT 1 30-JUN-21 7JL8 0 JRNL AUTH O.RECHKOBLIT,R.E.JOHNSON,Y.K.GUPTA,L.PRAKASH,S.PRAKASH, JRNL AUTH 2 A.K.AGGARWAL JRNL TITL STRUCTURAL BASIS OF DNA SYNTHESIS OPPOSITE 8-OXOGUANINE BY JRNL TITL 2 HUMAN PRIMPOL PRIMASE-POLYMERASE. JRNL REF NAT COMMUN V. 12 4020 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34188055 JRNL DOI 10.1038/S41467-021-24317-Z REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 48566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 2308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1600 - 5.2800 0.98 2899 157 0.1988 0.2199 REMARK 3 2 5.2800 - 4.2000 0.98 2925 129 0.1560 0.1613 REMARK 3 3 4.2000 - 3.6700 0.98 2922 132 0.1649 0.1658 REMARK 3 4 3.6700 - 3.3300 0.98 2957 140 0.1666 0.2033 REMARK 3 5 3.3300 - 3.0900 0.98 2914 141 0.1837 0.2033 REMARK 3 6 3.0900 - 2.9100 0.98 2934 137 0.1941 0.2032 REMARK 3 7 2.9100 - 2.7700 0.97 2860 133 0.1899 0.2402 REMARK 3 8 2.7700 - 2.6500 0.97 2916 139 0.1938 0.2505 REMARK 3 9 2.6500 - 2.5400 0.97 2895 147 0.1996 0.2449 REMARK 3 10 2.5400 - 2.4600 0.97 2908 156 0.2057 0.2802 REMARK 3 11 2.4600 - 2.3800 0.97 2865 147 0.2114 0.2496 REMARK 3 12 2.3800 - 2.3100 0.97 2865 149 0.2212 0.2709 REMARK 3 13 2.3100 - 2.2500 0.97 2878 141 0.2275 0.2671 REMARK 3 14 2.2500 - 2.2000 0.97 2865 171 0.2360 0.2643 REMARK 3 15 2.2000 - 2.1500 0.97 2906 146 0.2581 0.3027 REMARK 3 16 2.1500 - 2.1000 0.94 2749 143 0.2918 0.3216 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8304 -60.1254 -3.0686 REMARK 3 T TENSOR REMARK 3 T11: 0.0384 T22: 0.3660 REMARK 3 T33: 0.8307 T12: -0.1274 REMARK 3 T13: -0.6344 T23: 0.1918 REMARK 3 L TENSOR REMARK 3 L11: 3.0083 L22: 2.8605 REMARK 3 L33: 0.3781 L12: 0.2651 REMARK 3 L13: 0.0313 L23: -0.3797 REMARK 3 S TENSOR REMARK 3 S11: -0.4371 S12: 0.3574 S13: -0.8580 REMARK 3 S21: -0.6295 S22: 0.0532 S23: 1.0341 REMARK 3 S31: 0.5642 S32: -0.7110 S33: -0.5415 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.2849 -52.0183 3.2347 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.3401 REMARK 3 T33: 0.5962 T12: 0.0277 REMARK 3 T13: -0.0657 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 3.0302 L22: 3.3262 REMARK 3 L33: 2.3289 L12: 1.6927 REMARK 3 L13: 1.0606 L23: -0.8840 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: -0.0936 S13: 0.6405 REMARK 3 S21: -0.2302 S22: 0.2168 S23: 0.8322 REMARK 3 S31: -0.1880 S32: -0.0158 S33: -0.1054 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.4003 -62.8035 21.9404 REMARK 3 T TENSOR REMARK 3 T11: 0.4117 T22: 0.3551 REMARK 3 T33: 0.3050 T12: -0.0269 REMARK 3 T13: 0.0264 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 2.8350 L22: 3.0325 REMARK 3 L33: 1.5367 L12: 0.0119 REMARK 3 L13: -0.9346 L23: 0.0050 REMARK 3 S TENSOR REMARK 3 S11: 0.1131 S12: -0.4123 S13: 0.1351 REMARK 3 S21: 0.4663 S22: -0.0401 S23: 0.0360 REMARK 3 S31: -0.2327 S32: 0.1367 S33: -0.0906 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.9373 -71.5981 12.8234 REMARK 3 T TENSOR REMARK 3 T11: 0.3928 T22: 0.3774 REMARK 3 T33: 0.4147 T12: -0.0113 REMARK 3 T13: 0.0178 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 2.5995 L22: 3.6558 REMARK 3 L33: 3.4426 L12: -0.3362 REMARK 3 L13: -0.7823 L23: 0.5083 REMARK 3 S TENSOR REMARK 3 S11: 0.2096 S12: 0.0914 S13: -0.1139 REMARK 3 S21: 0.1782 S22: -0.0011 S23: 0.0323 REMARK 3 S31: 0.0127 S32: 0.1587 S33: -0.1930 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.9867 -70.5938 30.5708 REMARK 3 T TENSOR REMARK 3 T11: 0.8634 T22: 0.5702 REMARK 3 T33: 0.3745 T12: -0.1552 REMARK 3 T13: 0.1404 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 3.0084 L22: 7.2829 REMARK 3 L33: 4.3397 L12: 4.3324 REMARK 3 L13: 1.2909 L23: 0.0679 REMARK 3 S TENSOR REMARK 3 S11: 0.3313 S12: -0.7928 S13: 0.3637 REMARK 3 S21: 1.7172 S22: -0.4759 S23: 0.9171 REMARK 3 S31: 0.3134 S32: -0.7169 S33: 0.0824 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.3582 -53.3412 13.4720 REMARK 3 T TENSOR REMARK 3 T11: 0.3767 T22: 0.4046 REMARK 3 T33: 0.3819 T12: 0.0064 REMARK 3 T13: 0.0435 T23: -0.0844 REMARK 3 L TENSOR REMARK 3 L11: 2.3159 L22: 3.5674 REMARK 3 L33: 1.0633 L12: -0.0502 REMARK 3 L13: -0.2063 L23: -0.6615 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: -0.1478 S13: 0.2670 REMARK 3 S21: 0.2984 S22: -0.0888 S23: 0.3935 REMARK 3 S31: -0.0819 S32: -0.0537 S33: 0.0077 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.9030 -69.1732 5.6305 REMARK 3 T TENSOR REMARK 3 T11: 0.4840 T22: 0.4749 REMARK 3 T33: 0.4898 T12: -0.0020 REMARK 3 T13: 0.0434 T23: -0.0679 REMARK 3 L TENSOR REMARK 3 L11: 1.6021 L22: 2.7708 REMARK 3 L33: 1.6600 L12: -1.9874 REMARK 3 L13: 0.0340 L23: 0.7267 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: 0.2645 S13: -0.1124 REMARK 3 S21: -0.2824 S22: 0.1584 S23: -0.4120 REMARK 3 S31: 0.3121 S32: 0.1168 S33: -0.0815 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7253 -72.2889 17.4444 REMARK 3 T TENSOR REMARK 3 T11: 0.7149 T22: 0.8550 REMARK 3 T33: 1.0465 T12: -0.3714 REMARK 3 T13: -0.2693 T23: 0.1914 REMARK 3 L TENSOR REMARK 3 L11: 2.5773 L22: 4.6055 REMARK 3 L33: 1.9888 L12: 0.8145 REMARK 3 L13: -1.2315 L23: 2.0247 REMARK 3 S TENSOR REMARK 3 S11: 0.9097 S12: -0.9967 S13: -0.3246 REMARK 3 S21: 0.5555 S22: -0.5842 S23: 0.4221 REMARK 3 S31: 1.3288 S32: -0.3279 S33: -0.5641 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9260 -74.6312 19.4316 REMARK 3 T TENSOR REMARK 3 T11: 1.7145 T22: 0.9500 REMARK 3 T33: 1.4234 T12: -0.5511 REMARK 3 T13: -0.0482 T23: 0.1883 REMARK 3 L TENSOR REMARK 3 L11: 2.7170 L22: 3.5237 REMARK 3 L33: 0.3505 L12: 1.0463 REMARK 3 L13: -0.7639 L23: -0.8537 REMARK 3 S TENSOR REMARK 3 S11: 0.3469 S12: 0.0885 S13: -0.4106 REMARK 3 S21: -1.7535 S22: 0.6645 S23: 1.8307 REMARK 3 S31: 1.7954 S32: -1.0092 S33: -0.6718 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9217 -93.5894 -12.7374 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.5299 REMARK 3 T33: 0.4856 T12: -0.0083 REMARK 3 T13: -0.0500 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 4.2602 L22: 3.9846 REMARK 3 L33: 3.3759 L12: -0.9702 REMARK 3 L13: 0.6172 L23: 0.0154 REMARK 3 S TENSOR REMARK 3 S11: 0.2601 S12: 0.3365 S13: -0.2597 REMARK 3 S21: -0.1775 S22: 0.0084 S23: 0.6779 REMARK 3 S31: 0.1714 S32: -0.6852 S33: -0.1683 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.9100 -99.1122 -11.9240 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.3402 REMARK 3 T33: 0.3255 T12: 0.0189 REMARK 3 T13: -0.0512 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 3.2930 L22: 3.6775 REMARK 3 L33: 1.3437 L12: -0.9388 REMARK 3 L13: 0.9843 L23: 0.3282 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: 0.2086 S13: -0.4754 REMARK 3 S21: 0.0285 S22: -0.0011 S23: 0.1906 REMARK 3 S31: 0.3664 S32: -0.2733 S33: -0.0071 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.7993 -87.9533 -5.6929 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: 0.3590 REMARK 3 T33: 0.3213 T12: 0.0115 REMARK 3 T13: -0.0284 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 3.4486 L22: 2.0479 REMARK 3 L33: 2.8579 L12: -0.9340 REMARK 3 L13: -1.8014 L23: 0.0992 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: -0.0918 S13: -0.2582 REMARK 3 S21: 0.1118 S22: 0.0483 S23: -0.1035 REMARK 3 S31: -0.0227 S32: 0.2478 S33: 0.0519 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 173 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.8619 -79.2544 -2.9889 REMARK 3 T TENSOR REMARK 3 T11: 0.3130 T22: 0.3302 REMARK 3 T33: 0.3277 T12: 0.0282 REMARK 3 T13: -0.0417 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 4.4012 L22: 3.8444 REMARK 3 L33: 2.7625 L12: -0.6864 REMARK 3 L13: -0.8523 L23: 1.2019 REMARK 3 S TENSOR REMARK 3 S11: 0.0678 S12: -0.3348 S13: 0.1923 REMARK 3 S21: 0.1962 S22: 0.0146 S23: 0.1936 REMARK 3 S31: -0.1352 S32: -0.1864 S33: -0.0801 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 193 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.3245 -91.4289 -8.7800 REMARK 3 T TENSOR REMARK 3 T11: 0.2697 T22: 0.4084 REMARK 3 T33: 0.3406 T12: 0.0557 REMARK 3 T13: -0.0217 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 2.6184 L22: 1.9171 REMARK 3 L33: 1.7166 L12: 0.7933 REMARK 3 L13: -0.8656 L23: 0.0258 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.0704 S13: -0.0642 REMARK 3 S21: -0.1544 S22: -0.0158 S23: -0.1836 REMARK 3 S31: 0.0389 S32: 0.1761 S33: 0.0575 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 331 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.1973 -81.2299 1.8863 REMARK 3 T TENSOR REMARK 3 T11: 0.4381 T22: 0.4294 REMARK 3 T33: 0.4209 T12: 0.0321 REMARK 3 T13: 0.0664 T23: -0.0581 REMARK 3 L TENSOR REMARK 3 L11: 1.7898 L22: 2.4976 REMARK 3 L33: 2.0052 L12: 0.5737 REMARK 3 L13: 0.3373 L23: 1.6946 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -0.1742 S13: 0.2984 REMARK 3 S21: 0.3275 S22: -0.0539 S23: 0.2802 REMARK 3 S31: -0.2592 S32: -0.0996 S33: -0.1018 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 3 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.0525 -78.2781 -28.0604 REMARK 3 T TENSOR REMARK 3 T11: 0.9120 T22: 0.7911 REMARK 3 T33: 0.5960 T12: -0.1863 REMARK 3 T13: -0.0314 T23: 0.2507 REMARK 3 L TENSOR REMARK 3 L11: 2.5997 L22: 1.6377 REMARK 3 L33: 3.3419 L12: -1.4724 REMARK 3 L13: -0.5894 L23: -1.1644 REMARK 3 S TENSOR REMARK 3 S11: -0.2830 S12: 0.5729 S13: 0.7457 REMARK 3 S21: -1.3575 S22: -0.1789 S23: -0.5584 REMARK 3 S31: -0.9587 S32: 0.5980 S33: 0.3377 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 6 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.6532 -76.0963 -30.8217 REMARK 3 T TENSOR REMARK 3 T11: 1.3471 T22: 0.8468 REMARK 3 T33: 0.9006 T12: -0.0922 REMARK 3 T13: 0.0703 T23: 0.3083 REMARK 3 L TENSOR REMARK 3 L11: 3.0442 L22: 9.1677 REMARK 3 L33: 3.2178 L12: -1.6701 REMARK 3 L13: 0.2782 L23: -1.1065 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: 0.9347 S13: 0.0739 REMARK 3 S21: -2.5162 S22: 0.3075 S23: 0.6846 REMARK 3 S31: -0.9220 S32: -0.1532 S33: -0.1368 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000251007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03324 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48622 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.099 REMARK 200 RESOLUTION RANGE LOW (A) : 28.162 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5L2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 225-250 MM CACL2, 16-19% PEG 3350, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 18 REMARK 465 TYR A 19 REMARK 465 GLU A 20 REMARK 465 ARG A 21 REMARK 465 LYS A 22 REMARK 465 PRO A 23 REMARK 465 LEU A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 VAL A 27 REMARK 465 TYR A 28 REMARK 465 ARG A 29 REMARK 465 PRO A 30 REMARK 465 ARG A 31 REMARK 465 LEU A 32 REMARK 465 SER A 33 REMARK 465 LYS A 34 REMARK 465 PRO A 35 REMARK 465 GLY A 201 REMARK 465 SER A 202 REMARK 465 GLU A 203 REMARK 465 ASP A 204 REMARK 465 ASP A 205 REMARK 465 ASP A 206 REMARK 465 SER A 207 REMARK 465 ALA A 208 REMARK 465 PRO A 209 REMARK 465 GLU A 210 REMARK 465 THR A 211 REMARK 465 THR A 212 REMARK 465 GLY A 213 REMARK 465 HIS A 214 REMARK 465 GLY A 215 REMARK 465 PHE A 216 REMARK 465 PRO A 217 REMARK 465 HIS A 218 REMARK 465 PHE A 219 REMARK 465 SER A 220 REMARK 465 GLU A 221 REMARK 465 ALA A 222 REMARK 465 PRO A 223 REMARK 465 ALA A 224 REMARK 465 ARG A 225 REMARK 465 GLN A 226 REMARK 465 GLY A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 PHE A 230 REMARK 465 ASN A 231 REMARK 465 LYS A 232 REMARK 465 MET A 233 REMARK 465 PHE A 234 REMARK 465 THR A 235 REMARK 465 GLU A 236 REMARK 465 LYS A 237 REMARK 465 ALA A 238 REMARK 465 THR A 239 REMARK 465 GLU A 240 REMARK 465 GLU A 241 REMARK 465 SER A 242 REMARK 465 TRP A 243 REMARK 465 THR A 244 REMARK 465 SER A 245 REMARK 465 ASN A 246 REMARK 465 SER A 247 REMARK 465 LYS A 248 REMARK 465 LYS A 249 REMARK 465 LEU A 250 REMARK 465 GLU A 251 REMARK 465 ARG A 252 REMARK 465 LEU A 253 REMARK 465 GLY A 254 REMARK 465 SER A 255 REMARK 465 ALA A 256 REMARK 465 GLU A 257 REMARK 465 GLN A 258 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 SER A 349 REMARK 465 GLN A 350 REMARK 465 ASN A 351 REMARK 465 LYS A 352 REMARK 465 GLN A 353 REMARK 465 LYS A 354 REMARK 465 DC C 1 REMARK 465 DC C 14 REMARK 465 DC C 15 REMARK 465 DC C 16 REMARK 465 DC C 17 REMARK 465 DG D 2 REMARK 465 DG D 3 REMARK 465 DG D 4 REMARK 465 DT D 5 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 4 REMARK 465 TRP B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 8 REMARK 465 LEU B 9 REMARK 465 LYS B 10 REMARK 465 GLN B 11 REMARK 465 ILE B 12 REMARK 465 GLU B 13 REMARK 465 GLU B 14 REMARK 465 ARG B 15 REMARK 465 ALA B 16 REMARK 465 SER B 17 REMARK 465 HIS B 18 REMARK 465 TYR B 19 REMARK 465 GLU B 20 REMARK 465 ARG B 21 REMARK 465 LYS B 22 REMARK 465 PRO B 23 REMARK 465 LEU B 24 REMARK 465 SER B 25 REMARK 465 SER B 26 REMARK 465 VAL B 27 REMARK 465 TYR B 28 REMARK 465 ARG B 29 REMARK 465 PRO B 30 REMARK 465 ARG B 31 REMARK 465 LEU B 32 REMARK 465 SER B 33 REMARK 465 LYS B 34 REMARK 465 PRO B 35 REMARK 465 GLU B 36 REMARK 465 GLU B 37 REMARK 465 GLY B 201 REMARK 465 SER B 202 REMARK 465 GLU B 203 REMARK 465 ASP B 204 REMARK 465 ASP B 205 REMARK 465 ASP B 206 REMARK 465 SER B 207 REMARK 465 ALA B 208 REMARK 465 PRO B 209 REMARK 465 GLU B 210 REMARK 465 THR B 211 REMARK 465 THR B 212 REMARK 465 GLY B 213 REMARK 465 HIS B 214 REMARK 465 GLY B 215 REMARK 465 PHE B 216 REMARK 465 PRO B 217 REMARK 465 HIS B 218 REMARK 465 PHE B 219 REMARK 465 SER B 220 REMARK 465 GLU B 221 REMARK 465 ALA B 222 REMARK 465 PRO B 223 REMARK 465 ALA B 224 REMARK 465 ARG B 225 REMARK 465 GLN B 226 REMARK 465 GLY B 227 REMARK 465 PHE B 228 REMARK 465 SER B 229 REMARK 465 PHE B 230 REMARK 465 ASN B 231 REMARK 465 LYS B 232 REMARK 465 MET B 233 REMARK 465 PHE B 234 REMARK 465 THR B 235 REMARK 465 GLU B 236 REMARK 465 LYS B 237 REMARK 465 ALA B 238 REMARK 465 THR B 239 REMARK 465 GLU B 240 REMARK 465 GLU B 241 REMARK 465 SER B 242 REMARK 465 TRP B 243 REMARK 465 THR B 244 REMARK 465 SER B 245 REMARK 465 ASN B 246 REMARK 465 SER B 247 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 LEU B 250 REMARK 465 GLU B 251 REMARK 465 ARG B 252 REMARK 465 LEU B 253 REMARK 465 GLY B 254 REMARK 465 SER B 255 REMARK 465 ALA B 256 REMARK 465 GLU B 257 REMARK 465 GLN B 258 REMARK 465 SER B 259 REMARK 465 SER B 260 REMARK 465 PRO B 261 REMARK 465 SER B 349 REMARK 465 GLN B 350 REMARK 465 ASN B 351 REMARK 465 LYS B 352 REMARK 465 GLN B 353 REMARK 465 LYS B 354 REMARK 465 DC G 1 REMARK 465 DA G 2 REMARK 465 DA G 13 REMARK 465 DC G 14 REMARK 465 DC G 15 REMARK 465 DC G 16 REMARK 465 DC G 17 REMARK 465 DG H 2 REMARK 465 DG H 3 REMARK 465 DG H 4 REMARK 465 DT H 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 SER A 17 OG REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 SER A 57 OG REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 VAL A 71 CG1 CG2 REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 ASN A 149 CG OD1 ND2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 MET A 272 CE REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 ARG A 301 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 ILE A 315 CG1 CG2 CD1 REMARK 470 GLN A 316 CG CD OE1 NE2 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 VAL B 71 CG1 CG2 REMARK 470 GLN B 75 CG CD OE1 NE2 REMARK 470 ARG B 93 CZ NH1 NH2 REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 LEU B 96 CG CD1 CD2 REMARK 470 LYS B 128 CE NZ REMARK 470 LYS B 140 CE NZ REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 GLU B 153 CD OE1 OE2 REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 470 LYS B 191 NZ REMARK 470 LYS B 300 CD CE NZ REMARK 470 ARG B 301 CD NE CZ NH1 NH2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 ILE B 315 CG1 CG2 CD1 REMARK 470 ARG B 336 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 337 CG CD1 CD2 CE1 CE2 CZ REMARK 470 DC G 12 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DC G 12 N1 C2 O2 N3 C4 N4 C5 REMARK 470 DC G 12 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG H 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 96 67.47 38.38 REMARK 500 HIS A 98 63.76 61.36 REMARK 500 GLN A 173 78.83 -117.16 REMARK 500 TYR A 284 62.94 -106.80 REMARK 500 TRP B 42 104.65 -161.58 REMARK 500 ASN B 95 139.04 -177.46 REMARK 500 SER B 160 35.84 -140.41 REMARK 500 GLN B 173 79.36 -110.77 REMARK 500 TYR B 284 63.40 -106.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 276 0.07 SIDE CHAIN REMARK 500 ASN B 289 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD1 REMARK 620 2 ASP A 114 OD2 51.9 REMARK 620 3 GLU A 116 OE2 155.3 107.2 REMARK 620 4 DTP A 401 O2G 141.3 165.8 61.4 REMARK 620 5 DTP A 401 O2B 74.3 110.8 129.9 75.0 REMARK 620 6 DTP A 401 O2A 110.6 83.4 75.3 85.3 78.0 REMARK 620 7 HOH A 514 O 76.8 107.6 101.6 83.9 96.7 168.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 114 OD1 REMARK 620 2 ASP B 114 OD2 52.5 REMARK 620 3 GLU B 116 OE1 124.6 86.2 REMARK 620 4 DTP B 401 O2G 139.4 168.1 84.3 REMARK 620 5 DTP B 401 O1B 76.7 110.7 158.7 77.1 REMARK 620 6 DTP B 401 O2A 116.4 83.4 88.6 89.1 80.9 REMARK 620 7 HOH B 517 O 69.3 109.3 98.8 79.4 88.0 165.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 114 OD2 REMARK 620 2 GLU B 116 OE1 85.2 REMARK 620 3 GLU B 116 OE2 113.1 53.3 REMARK 620 4 ASP B 280 OD2 77.1 133.4 95.1 REMARK 620 5 DTP B 401 O2A 94.2 88.5 127.9 135.0 REMARK 620 6 HOH B 502 O 160.8 76.0 57.9 118.8 81.7 REMARK 620 7 DC H 14 O3' 103.2 170.2 125.6 54.7 85.9 95.2 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7JK1 RELATED DB: PDB REMARK 900 HUMAN PRIMPOL INSERTING CORRECT DCTP OPPOSITE THE 8-OXOGUANINE REMARK 900 LESION. REMARK 900 RELATED ID: 7JKL RELATED DB: PDB REMARK 900 HUMAN PRIMPOL MISINSERTING DATP OPPOSITE THE 8-OXOGUANINE LESION REMARK 900 RELATED ID: 7JKP RELATED DB: PDB REMARK 900 HUMAN PRIMPOL MISINSERTING DATP OPPOSITE THE 8-OXOGUANINE LESION DBREF 7JL8 A 1 354 UNP Q96LW4 PRIPO_HUMAN 1 354 DBREF 7JL8 C 1 17 PDB 7JL8 7JL8 1 17 DBREF 7JL8 D 2 14 PDB 7JL8 7JL8 2 14 DBREF 7JL8 B 1 354 UNP Q96LW4 PRIPO_HUMAN 1 354 DBREF 7JL8 G 1 17 PDB 7JL8 7JL8 1 17 DBREF 7JL8 H 2 14 PDB 7JL8 7JL8 2 14 SEQRES 1 A 354 MET ASN ARG LYS TRP GLU ALA LYS LEU LYS GLN ILE GLU SEQRES 2 A 354 GLU ARG ALA SER HIS TYR GLU ARG LYS PRO LEU SER SER SEQRES 3 A 354 VAL TYR ARG PRO ARG LEU SER LYS PRO GLU GLU PRO PRO SEQRES 4 A 354 SER ILE TRP ARG LEU PHE HIS ARG GLN ALA GLN ALA PHE SEQRES 5 A 354 ASN PHE VAL LYS SER CYS LYS GLU ASP VAL HIS VAL PHE SEQRES 6 A 354 ALA LEU GLU CYS LYS VAL GLY ASP GLY GLN ARG ILE TYR SEQRES 7 A 354 LEU VAL THR THR TYR ALA GLU PHE TRP PHE TYR TYR LYS SEQRES 8 A 354 SER ARG LYS ASN LEU LEU HIS CYS TYR GLU VAL ILE PRO SEQRES 9 A 354 GLU ASN ALA VAL CYS LYS LEU TYR PHE ASP LEU GLU PHE SEQRES 10 A 354 ASN LYS PRO ALA ASN PRO GLY ALA ASP GLY LYS LYS MET SEQRES 11 A 354 VAL ALA LEU LEU ILE GLU TYR VAL CYS LYS ALA LEU GLN SEQRES 12 A 354 GLU LEU TYR GLY VAL ASN CYS SER ALA GLU ASP VAL LEU SEQRES 13 A 354 ASN LEU ASP SER SER THR ASP GLU LYS PHE SER ARG HIS SEQRES 14 A 354 LEU ILE PHE GLN LEU HIS ASP VAL ALA PHE LYS ASP ASN SEQRES 15 A 354 ILE HIS VAL GLY ASN PHE LEU ARG LYS ILE LEU GLN PRO SEQRES 16 A 354 ALA LEU ASP LEU LEU GLY SER GLU ASP ASP ASP SER ALA SEQRES 17 A 354 PRO GLU THR THR GLY HIS GLY PHE PRO HIS PHE SER GLU SEQRES 18 A 354 ALA PRO ALA ARG GLN GLY PHE SER PHE ASN LYS MET PHE SEQRES 19 A 354 THR GLU LYS ALA THR GLU GLU SER TRP THR SER ASN SER SEQRES 20 A 354 LYS LYS LEU GLU ARG LEU GLY SER ALA GLU GLN SER SER SEQRES 21 A 354 PRO ASP LEU SER PHE LEU VAL VAL LYS ASN ASN MET GLY SEQRES 22 A 354 GLU LYS HIS LEU PHE VAL ASP LEU GLY VAL TYR THR ARG SEQRES 23 A 354 ASN ARG ASN PHE ARG LEU TYR LYS SER SER LYS ILE GLY SEQRES 24 A 354 LYS ARG VAL ALA LEU GLU VAL THR GLU ASP ASN LYS PHE SEQRES 25 A 354 PHE PRO ILE GLN SER LYS ASP VAL SER ASP GLU TYR GLN SEQRES 26 A 354 TYR PHE LEU SER SER LEU VAL SER ASN VAL ARG PHE SER SEQRES 27 A 354 ASP THR LEU ARG ILE LEU THR CYS GLU PRO SER GLN ASN SEQRES 28 A 354 LYS GLN LYS SEQRES 1 C 17 DC DA DT 8OG DC DC DT DA DC DC DA DC DA SEQRES 2 C 17 DC DC DC DC SEQRES 1 D 13 DG DG DG DT DG DT DG DG DT DA DG DG DC SEQRES 1 B 354 MET ASN ARG LYS TRP GLU ALA LYS LEU LYS GLN ILE GLU SEQRES 2 B 354 GLU ARG ALA SER HIS TYR GLU ARG LYS PRO LEU SER SER SEQRES 3 B 354 VAL TYR ARG PRO ARG LEU SER LYS PRO GLU GLU PRO PRO SEQRES 4 B 354 SER ILE TRP ARG LEU PHE HIS ARG GLN ALA GLN ALA PHE SEQRES 5 B 354 ASN PHE VAL LYS SER CYS LYS GLU ASP VAL HIS VAL PHE SEQRES 6 B 354 ALA LEU GLU CYS LYS VAL GLY ASP GLY GLN ARG ILE TYR SEQRES 7 B 354 LEU VAL THR THR TYR ALA GLU PHE TRP PHE TYR TYR LYS SEQRES 8 B 354 SER ARG LYS ASN LEU LEU HIS CYS TYR GLU VAL ILE PRO SEQRES 9 B 354 GLU ASN ALA VAL CYS LYS LEU TYR PHE ASP LEU GLU PHE SEQRES 10 B 354 ASN LYS PRO ALA ASN PRO GLY ALA ASP GLY LYS LYS MET SEQRES 11 B 354 VAL ALA LEU LEU ILE GLU TYR VAL CYS LYS ALA LEU GLN SEQRES 12 B 354 GLU LEU TYR GLY VAL ASN CYS SER ALA GLU ASP VAL LEU SEQRES 13 B 354 ASN LEU ASP SER SER THR ASP GLU LYS PHE SER ARG HIS SEQRES 14 B 354 LEU ILE PHE GLN LEU HIS ASP VAL ALA PHE LYS ASP ASN SEQRES 15 B 354 ILE HIS VAL GLY ASN PHE LEU ARG LYS ILE LEU GLN PRO SEQRES 16 B 354 ALA LEU ASP LEU LEU GLY SER GLU ASP ASP ASP SER ALA SEQRES 17 B 354 PRO GLU THR THR GLY HIS GLY PHE PRO HIS PHE SER GLU SEQRES 18 B 354 ALA PRO ALA ARG GLN GLY PHE SER PHE ASN LYS MET PHE SEQRES 19 B 354 THR GLU LYS ALA THR GLU GLU SER TRP THR SER ASN SER SEQRES 20 B 354 LYS LYS LEU GLU ARG LEU GLY SER ALA GLU GLN SER SER SEQRES 21 B 354 PRO ASP LEU SER PHE LEU VAL VAL LYS ASN ASN MET GLY SEQRES 22 B 354 GLU LYS HIS LEU PHE VAL ASP LEU GLY VAL TYR THR ARG SEQRES 23 B 354 ASN ARG ASN PHE ARG LEU TYR LYS SER SER LYS ILE GLY SEQRES 24 B 354 LYS ARG VAL ALA LEU GLU VAL THR GLU ASP ASN LYS PHE SEQRES 25 B 354 PHE PRO ILE GLN SER LYS ASP VAL SER ASP GLU TYR GLN SEQRES 26 B 354 TYR PHE LEU SER SER LEU VAL SER ASN VAL ARG PHE SER SEQRES 27 B 354 ASP THR LEU ARG ILE LEU THR CYS GLU PRO SER GLN ASN SEQRES 28 B 354 LYS GLN LYS SEQRES 1 G 17 DC DA DT 8OG DC DC DT DA DC DC DA DC DA SEQRES 2 G 17 DC DC DC DC SEQRES 1 H 13 DG DG DG DT DG DT DG DG DT DA DG DG DC HET 8OG C 4 34 HET 8OG G 4 34 HET DTP A 401 42 HET CA A 402 1 HET GOL A 403 14 HET EDO A 404 10 HET PEG A 405 17 HET GOL A 406 13 HET PEG A 407 17 HET DTP B 401 42 HET CA B 402 1 HET CA B 403 1 HET GOL B 404 14 HET GOL B 405 14 HET GOL B 406 14 HET PEG B 407 17 HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 8OG 2(C10 H14 N5 O8 P) FORMUL 7 DTP 2(C10 H16 N5 O12 P3) FORMUL 8 CA 3(CA 2+) FORMUL 9 GOL 5(C3 H8 O3) FORMUL 10 EDO C2 H6 O2 FORMUL 11 PEG 3(C4 H10 O3) FORMUL 21 HOH *161(H2 O) HELIX 1 AA1 MET A 1 ARG A 15 1 15 HELIX 2 AA2 ARG A 47 SER A 57 1 11 HELIX 3 AA3 THR A 82 LYS A 91 1 10 HELIX 4 AA4 ASP A 126 GLY A 147 1 22 HELIX 5 AA5 SER A 151 GLU A 153 5 3 HELIX 6 AA6 ASP A 181 LEU A 193 1 13 HELIX 7 AA7 LEU A 193 ASP A 198 1 6 HELIX 8 AA8 LEU A 263 PHE A 265 5 3 HELIX 9 AA9 ASP A 280 TYR A 284 5 5 HELIX 10 AB1 SER A 321 LEU A 331 1 11 HELIX 11 AB2 ARG B 47 LYS B 59 1 13 HELIX 12 AB3 THR B 82 LYS B 91 1 10 HELIX 13 AB4 ASP B 126 GLY B 147 1 22 HELIX 14 AB5 SER B 151 GLU B 153 5 3 HELIX 15 AB6 ASP B 181 LEU B 193 1 13 HELIX 16 AB7 LEU B 193 LEU B 199 1 7 HELIX 17 AB8 LEU B 263 PHE B 265 5 3 HELIX 18 AB9 ASP B 280 TYR B 284 5 5 HELIX 19 AC1 SER B 321 LEU B 331 1 11 SHEET 1 AA1 5 ARG A 43 PHE A 45 0 SHEET 2 AA1 5 ARG A 76 THR A 81 -1 O VAL A 80 N ARG A 43 SHEET 3 AA1 5 HIS A 63 GLU A 68 -1 N PHE A 65 O LEU A 79 SHEET 4 AA1 5 CYS A 99 VAL A 102 -1 O TYR A 100 N ALA A 66 SHEET 5 AA1 5 ASN A 289 ARG A 291 -1 O PHE A 290 N GLU A 101 SHEET 1 AA2 4 TYR A 112 ASN A 118 0 SHEET 2 AA2 4 LYS A 165 PHE A 172 -1 O ARG A 168 N LEU A 115 SHEET 3 AA2 4 VAL A 155 ASP A 159 -1 N LEU A 158 O HIS A 169 SHEET 4 AA2 4 GLU A 305 VAL A 306 -1 O GLU A 305 N ASP A 159 SHEET 1 AA3 4 VAL A 177 PHE A 179 0 SHEET 2 AA3 4 ARG A 342 LEU A 344 1 O LEU A 344 N ALA A 178 SHEET 3 AA3 4 ARG B 342 LEU B 344 -1 O ILE B 343 N ILE A 343 SHEET 4 AA3 4 VAL B 177 PHE B 179 1 N ALA B 178 O LEU B 344 SHEET 1 AA4 2 VAL A 267 LYS A 269 0 SHEET 2 AA4 2 LYS A 275 LEU A 277 -1 O HIS A 276 N VAL A 268 SHEET 1 AA5 5 TRP B 42 PHE B 45 0 SHEET 2 AA5 5 ARG B 76 THR B 81 -1 O TYR B 78 N PHE B 45 SHEET 3 AA5 5 HIS B 63 GLU B 68 -1 N PHE B 65 O LEU B 79 SHEET 4 AA5 5 CYS B 99 VAL B 102 -1 O TYR B 100 N ALA B 66 SHEET 5 AA5 5 ASN B 289 ARG B 291 -1 O PHE B 290 N GLU B 101 SHEET 1 AA6 4 TYR B 112 ASN B 118 0 SHEET 2 AA6 4 LYS B 165 PHE B 172 -1 O ARG B 168 N LEU B 115 SHEET 3 AA6 4 VAL B 155 ASP B 159 -1 N LEU B 158 O HIS B 169 SHEET 4 AA6 4 GLU B 305 VAL B 306 -1 O GLU B 305 N ASP B 159 SHEET 1 AA7 2 VAL B 267 LYS B 269 0 SHEET 2 AA7 2 LYS B 275 LEU B 277 -1 O HIS B 276 N VAL B 268 LINK O3' DT C 3 P 8OG C 4 1555 1555 1.61 LINK O3' 8OG C 4 P DC C 5 1555 1555 1.59 LINK O3' DT G 3 P 8OG G 4 1555 1555 1.60 LINK O3' 8OG G 4 P DC G 5 1555 1555 1.61 LINK OD1 ASP A 114 CA CA A 402 1555 1555 2.45 LINK OD2 ASP A 114 CA CA A 402 1555 1555 2.51 LINK OE2 GLU A 116 CA CA A 402 1555 1555 2.12 LINK O2G DTP A 401 CA CA A 402 1555 1555 2.43 LINK O2B DTP A 401 CA CA A 402 1555 1555 2.36 LINK O2A DTP A 401 CA CA A 402 1555 1555 2.20 LINK CA CA A 402 O HOH A 514 1555 1555 2.43 LINK OD1 ASP B 114 CA CA B 402 1555 1555 2.37 LINK OD2 ASP B 114 CA CA B 402 1555 1555 2.49 LINK OD2 ASP B 114 CA CA B 403 1555 1555 2.29 LINK OE1 GLU B 116 CA CA B 402 1555 1555 2.23 LINK OE1 GLU B 116 CA CA B 403 1555 1555 2.47 LINK OE2 GLU B 116 CA CA B 403 1555 1555 2.48 LINK OD2 ASP B 280 CA CA B 403 1555 1555 2.39 LINK O2G DTP B 401 CA CA B 402 1555 1555 2.37 LINK O1B DTP B 401 CA CA B 402 1555 1555 2.20 LINK O2A DTP B 401 CA CA B 402 1555 1555 2.35 LINK O2A DTP B 401 CA CA B 403 1555 1555 2.10 LINK CA CA B 402 O HOH B 517 1555 1555 2.13 LINK CA CA B 403 O HOH B 502 1555 1555 2.59 LINK CA CA B 403 O3' DC H 14 1555 1555 2.99 CRYST1 50.689 65.330 72.001 68.47 85.67 86.92 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019728 -0.001063 -0.001186 0.00000 SCALE2 0.000000 0.015329 -0.006000 0.00000 SCALE3 0.000000 0.000000 0.014957 0.00000