HEADER SUGAR BINDING PROTEIN 04-AUG-20 7JNB TITLE THE STRUCTURE OF CBM32-1 AND CBM32-2 DOMAINS FROM CLOSTRIDIUM TITLE 2 PERFRINGENS ZMPB IN COMPLEX WITH GALNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: F5/8 TYPE C DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARBOHYDRATE BINDING MODULE (UNP RESIDUES 28-453); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS (STRAIN ATCC 13124 / SOURCE 3 DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / TYPE A); SOURCE 4 ORGANISM_TAXID: 195103; SOURCE 5 STRAIN: ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / SOURCE 6 TYPE A; SOURCE 7 GENE: CPF_1489; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CARBOHYDRATE BINDING MODULE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.PLUVINAGE,A.B.BORASTON REVDAT 2 18-AUG-21 7JNB 1 JRNL REVDAT 1 03-FEB-21 7JNB 0 JRNL AUTH B.PLUVINAGE,E.FICKO-BLEAN,I.NOACH,C.STUART,N.THOMPSON, JRNL AUTH 2 H.MCCLURE,N.BUENBRAZO,W.WAKARCHUK,A.B.BORASTON JRNL TITL ARCHITECTURALLY COMPLEX O -GLYCOPEPTIDASES ARE CUSTOMIZED JRNL TITL 2 FOR MUCIN RECOGNITION AND HYDROLYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33658366 JRNL DOI 10.1073/PNAS.2019220118 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 47838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2573 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3411 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3175 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.718 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3261 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4394 ; 1.020 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 7.254 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;34.325 ;23.969 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 551 ;14.400 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.721 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 424 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2529 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7JNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000250711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91966 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50493 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 1.01700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M TRIBASIC AMMONIUM CITRATE, 3% REMARK 280 GLYCEROL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.93500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.80500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.40250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.80500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.46750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.80500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.80500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 139.40250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.80500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.80500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.46750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.93500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 ALA A 40A REMARK 465 SER A 40B REMARK 465 GLN A 40C REMARK 465 GLU A 40D REMARK 465 LEU A 40E REMARK 465 ASN A 40F REMARK 465 THR A 40G REMARK 465 LYS A 40H REMARK 465 ASN A 40I REMARK 465 ASN A 40J REMARK 465 SER A 40K REMARK 465 LYS A 40L REMARK 465 VAL A 40M REMARK 465 GLU A 40N REMARK 465 VAL A 40O REMARK 465 SER A 40P REMARK 465 HIS A 40Q REMARK 465 ASP A 40R REMARK 465 ASP A 40S REMARK 465 GLU A 40T REMARK 465 SER A 336 REMARK 465 SER A 337 REMARK 465 ASP A 434 REMARK 465 GLU A 435 REMARK 465 VAL A 436 REMARK 465 TYR A 437 REMARK 465 SER A 438 REMARK 465 SER A 439 REMARK 465 ILE A 440 REMARK 465 PRO A 441 REMARK 465 LYS A 442 REMARK 465 LEU A 443 REMARK 465 PHE A 444 REMARK 465 THR A 445 REMARK 465 ASP A 446 REMARK 465 GLY A 447 REMARK 465 THR A 448 REMARK 465 MSE A 449 REMARK 465 SER A 450 REMARK 465 GLU A 451 REMARK 465 LEU A 452 REMARK 465 SER A 453 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 276 CD CE NZ REMARK 470 LYS A 299 CE NZ REMARK 470 TYR A 311 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 333 CG CD1 CD2 REMARK 470 GLU A 393 CG CD OE1 OE2 REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 LYS A 416 NZ REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 LYS A 419 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 87 -121.95 54.28 REMARK 500 ASP A 137 -148.51 -80.59 REMARK 500 ASN A 199 -27.46 76.37 REMARK 500 ASN A 273 55.57 -142.51 REMARK 500 ARG A 309 -148.54 48.25 REMARK 500 ALA A 312 -131.85 52.94 REMARK 500 ILE A 320 36.66 -141.46 REMARK 500 THR A 332 -156.55 -84.77 REMARK 500 ALA A 368 97.82 -62.74 REMARK 500 LYS A 416 -70.02 -62.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 93 O REMARK 620 2 ASP A 96 OD1 86.1 REMARK 620 3 ASN A 98 O 174.4 90.5 REMARK 620 4 THR A 101 O 94.2 139.5 85.6 REMARK 620 5 THR A 101 OG1 92.5 66.9 82.0 72.6 REMARK 620 6 ALA A 204 O 86.0 143.8 99.3 76.3 148.7 REMARK 620 7 GLU A 205 OE2 93.9 72.7 89.3 147.3 138.5 72.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 318 O REMARK 620 2 ASP A 321 OD1 93.2 REMARK 620 3 ASP A 323 O 164.6 97.1 REMARK 620 4 THR A 326 O 86.5 140.1 78.3 REMARK 620 5 THR A 326 OG1 91.1 69.9 81.8 70.2 REMARK 620 6 ASN A 426 O 83.4 145.0 94.5 74.6 144.7 REMARK 620 7 GLU A 427 OE2 103.6 73.7 90.3 144.9 141.4 73.3 REMARK 620 N 1 2 3 4 5 6 DBREF1 7JNB A 40C 453 UNP A0A0H2YN38_CLOP1 DBREF2 7JNB A A0A0H2YN38 28 453 SEQADV 7JNB MSE A 20 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB GLY A 21 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB SER A 22 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB SER A 23 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB HIS A 24 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB HIS A 25 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB HIS A 26 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB HIS A 27 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB HIS A 28 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB HIS A 29 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB SER A 30 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB SER A 31 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB GLY A 32 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB LEU A 33 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB VAL A 34 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB PRO A 35 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB ARG A 36 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB GLY A 37 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB SER A 38 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB HIS A 39 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB MSE A 40 UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB ALA A 40A UNP A0A0H2YN3 EXPRESSION TAG SEQADV 7JNB SER A 40B UNP A0A0H2YN3 EXPRESSION TAG SEQRES 1 A 449 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 449 LEU VAL PRO ARG GLY SER HIS MSE ALA SER GLN GLU LEU SEQRES 3 A 449 ASN THR LYS ASN ASN SER LYS VAL GLU VAL SER HIS ASP SEQRES 4 A 449 ASP GLU SER HIS GLN ALA ARG VAL SER LYS PHE ASP LEU SEQRES 5 A 449 TYR ASN SER ASP LYS LEU ASP ALA TYR ASN GLN GLU PHE SEQRES 6 A 449 GLN VAL SER ARG SER ASN ILE LYS SER ILE ASN ASN ASN SEQRES 7 A 449 GLY GLY LYS TYR ASN SER SER THR ILE ASP LYS ALA ILE SEQRES 8 A 449 ASP GLY ASN LEU GLU THR HIS TRP GLU THR GLY LYS PRO SEQRES 9 A 449 ASN ASP ALA ASN PHE THR ASN GLU VAL VAL VAL THR PHE SEQRES 10 A 449 ASN GLU ILE THR ASN ILE ASP ARG ILE VAL TYR SER ALA SEQRES 11 A 449 ARG ARG ASP SER ALA ARG GLY LYS GLY PHE ALA LYS GLU SEQRES 12 A 449 PHE GLU ILE TYR ALA SER LEU LYS ASP GLU GLY ASP ASP SEQRES 13 A 449 PHE ASN LEU VAL SER SER GLY GLU TYR THR GLU SER THR SEQRES 14 A 449 ARG ASP LEU VAL GLU ILE LYS PHE ASN PRO THR ASP PHE SEQRES 15 A 449 LYS ARG LEU LYS PHE LYS PHE LYS LYS ALA ASP GLN ASN SEQRES 16 A 449 TRP ALA SER ALA ALA GLU PHE MSE PHE TYR LYS GLU ASP SEQRES 17 A 449 LYS LEU ASN GLU LYS PHE ASN GLY LEU PHE THR ASP SER SEQRES 18 A 449 SER MSE ASN LYS VAL SER GLU GLU PHE ASN THR LEU GLU SEQRES 19 A 449 LYS LEU ASN ALA PHE GLU ASN GLU LEU LYS ASP HIS PRO SEQRES 20 A 449 ILE TYR ASP LEU TYR LYS GLU GLY LEU ASN ASN ALA ARG SEQRES 21 A 449 ALA ILE LEU THR GLU THR SER GLU ASN PRO THR LYS ALA SEQRES 22 A 449 THR LEU GLY GLN ILE THR TYR ASN LEU ASN ASP ASP TYR SEQRES 23 A 449 ASN ASN GLN TYR ARG MSE PRO TYR LYS ASN ILE LYS ALA SEQRES 24 A 449 ILE LYS ASN ASN GLY ARG HIS TYR ALA ALA GLN ASN ILE SEQRES 25 A 449 GLU LYS ALA ILE ASP ASN ASP VAL ASN THR TYR TRP GLU SEQRES 26 A 449 THR GLY THR LEU ASN SER SER SER PHE ASN ASN GLU VAL SEQRES 27 A 449 GLU VAL GLU PHE ASN ASP LEU VAL THR LEU ASP ARG ILE SEQRES 28 A 449 VAL TYR GLY SER ARG GLN SER ASP LEU LYS GLY PHE ALA SEQRES 29 A 449 GLU GLU VAL TYR ILE TYR ALA SER ARG THR SER LYS GLY SEQRES 30 A 449 ASP THR TYR LYS LEU VAL ALA THR GLY ALA HIS GLU ALA SEQRES 31 A 449 THR LYS GLY LEU VAL GLU ALA LYS PHE GLU PRO THR GLU SEQRES 32 A 449 PHE LYS ARG VAL LYS PHE LYS PHE LYS LYS SER LYS GLN SEQRES 33 A 449 ASN SER ALA THR LEU ASN GLU LEU MSE PHE TYR LYS PRO SEQRES 34 A 449 ASP GLU VAL TYR SER SER ILE PRO LYS LEU PHE THR ASP SEQRES 35 A 449 GLY THR MSE SER GLU LEU SER MODRES 7JNB MSE A 207 MET MODIFIED RESIDUE MODRES 7JNB MSE A 227 MET MODIFIED RESIDUE MODRES 7JNB MSE A 296 MET MODIFIED RESIDUE MODRES 7JNB MSE A 429 MET MODIFIED RESIDUE HET MSE A 40 8 HET MSE A 207 8 HET MSE A 227 8 HET MSE A 296 8 HET MSE A 429 8 HET CA A 501 1 HET CA A 502 1 HET A2G A 503 15 HET GOL A 504 6 HET GOL A 505 6 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GOL GLYCEROL HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 A2G C8 H15 N O6 FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *258(H2 O) HELIX 1 AA1 ASP A 55 SER A 59 5 5 HELIX 2 AA2 LYS A 61 GLN A 70 1 10 HELIX 3 AA3 SER A 72 SER A 74 5 3 HELIX 4 AA4 THR A 90 ASP A 96 5 7 HELIX 5 AA5 ASP A 212 GLY A 220 1 9 HELIX 6 AA6 SER A 231 ASN A 235 5 5 HELIX 7 AA7 THR A 236 LYS A 248 1 13 HELIX 8 AA8 ILE A 252 THR A 268 1 17 HELIX 9 AA9 THR A 283 LEU A 286 5 4 HELIX 10 AB1 ASN A 287 ARG A 295 1 9 HELIX 11 AB2 PRO A 297 LYS A 299 5 3 HELIX 12 AB3 ASN A 315 ILE A 320 5 6 HELIX 13 AB4 GLN A 420 SER A 422 5 3 SHEET 1 AA1 5 ARG A 50 LYS A 53 0 SHEET 2 AA1 5 VAL A 177 ALA A 196 -1 O GLU A 178 N SER A 52 SHEET 3 AA1 5 GLU A 116 SER A 133 -1 N ILE A 130 O ILE A 179 SHEET 4 AA1 5 ALA A 145 SER A 153 0 SHEET 5 AA1 5 ASN A 162 GLU A 168 -1 O VAL A 164 N ILE A 150 SHEET 1 AA2 4 ILE A 76 ASN A 81 0 SHEET 2 AA2 4 GLU A 116 SER A 133 -1 O VAL A 118 N ASN A 80 SHEET 3 AA2 4 VAL A 177 ALA A 196 -1 O ILE A 179 N ILE A 130 SHEET 4 AA2 4 GLU A 205 TYR A 209 0 SHEET 1 AA3 2 TRP A 103 GLU A 104 0 SHEET 2 AA3 2 SER A 202 ALA A 203 -1 O ALA A 203 N TRP A 103 SHEET 1 AA4 6 THR A 275 LYS A 276 0 SHEET 2 AA4 6 LYS A 385 ALA A 391 1 O THR A 389 N THR A 275 SHEET 3 AA4 6 ALA A 368 SER A 376 -1 N ILE A 373 O VAL A 387 SHEET 4 AA4 6 LEU A 398 SER A 418 -1 O LYS A 409 N SER A 376 SHEET 5 AA4 6 ASN A 340 TYR A 357 -1 N VAL A 342 O PHE A 413 SHEET 6 AA4 6 ILE A 301 ASN A 306 -1 N LYS A 305 O GLU A 343 SHEET 1 AA5 4 THR A 278 ILE A 282 0 SHEET 2 AA5 4 LEU A 398 SER A 418 -1 O GLU A 400 N GLY A 280 SHEET 3 AA5 4 ASN A 340 TYR A 357 -1 N VAL A 342 O PHE A 413 SHEET 4 AA5 4 LEU A 428 TYR A 431 -1 O MSE A 429 N VAL A 356 SHEET 1 AA6 2 TRP A 328 GLU A 329 0 SHEET 2 AA6 2 THR A 424 LEU A 425 -1 O LEU A 425 N TRP A 328 LINK C HIS A 39 N MSE A 40 1555 1555 1.34 LINK C PHE A 206 N MSE A 207 1555 1555 1.34 LINK C MSE A 207 N PHE A 208 1555 1555 1.33 LINK C SER A 226 N MSE A 227 1555 1555 1.34 LINK C MSE A 227 N ASN A 228 1555 1555 1.34 LINK C ARG A 295 N MSE A 296 1555 1555 1.34 LINK C MSE A 296 N PRO A 297 1555 1555 1.35 LINK C LEU A 428 N MSE A 429 1555 1555 1.34 LINK C MSE A 429 N PHE A 430 1555 1555 1.34 LINK O LYS A 93 CA CA A 502 1555 1555 2.20 LINK OD1 ASP A 96 CA CA A 502 1555 1555 2.60 LINK O ASN A 98 CA CA A 502 1555 1555 2.24 LINK O THR A 101 CA CA A 502 1555 1555 2.33 LINK OG1 THR A 101 CA CA A 502 1555 1555 2.55 LINK O ALA A 204 CA CA A 502 1555 1555 2.39 LINK OE2 GLU A 205 CA CA A 502 1555 1555 2.35 LINK O LYS A 318 CA CA A 501 1555 1555 2.30 LINK OD1 ASP A 321 CA CA A 501 1555 1555 2.21 LINK O ASP A 323 CA CA A 501 1555 1555 2.52 LINK O THR A 326 CA CA A 501 1555 1555 2.46 LINK OG1 THR A 326 CA CA A 501 1555 1555 2.57 LINK O ASN A 426 CA CA A 501 1555 1555 2.34 LINK OE2 GLU A 427 CA CA A 501 1555 1555 2.45 CRYST1 89.610 89.610 185.870 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011159 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005380 0.00000