HEADER HYDROLASE/HYDROLASE INHIBITOR 06-AUG-20 7JOM TITLE CRYSTAL STRUCTURE OF DANIO RERIO HISTONE DEACETYLASE 6 CATALYTIC TITLE 2 DOMAIN 2 COMPLEXED WITH TO-317 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HDAC6 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTONE DEACETYLASE 6; COMPND 5 EC: 3.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: HDAC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, HISTONE DEACETYLASE, INHIBITOR, METALLOHYDROLASE, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.R.WATSON,D.W.CHRISTIANSON REVDAT 3 18-OCT-23 7JOM 1 REMARK REVDAT 2 01-SEP-21 7JOM 1 JRNL REVDAT 1 16-JUN-21 7JOM 0 JRNL AUTH O.O.OLAOYE,P.R.WATSON,N.NAWAR,M.GELETU,A.SEDIGHI,S.BUKHARI, JRNL AUTH 2 Y.S.RAOUF,P.MANASWIYOUNGKUL,F.ERDOGAN,A.ABDELDAYEM, JRNL AUTH 3 A.D.CABRAL,M.M.HASSAN,K.TOUTAH,A.E.SHOUKSMITH,J.M.GAWEL, JRNL AUTH 4 J.ISRAELIAN,T.B.RADU,N.KACHHIYAPATEL,E.D.DE ARAUJO, JRNL AUTH 5 D.W.CHRISTIANSON,P.T.GUNNING JRNL TITL UNIQUE MOLECULAR INTERACTION WITH THE HISTONE DEACETYLASE 6 JRNL TITL 2 CATALYTIC TUNNEL: CRYSTALLOGRAPHIC AND BIOLOGICAL JRNL TITL 3 CHARACTERIZATION OF A MODEL CHEMOTYPE. JRNL REF J.MED.CHEM. V. 64 2691 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33576627 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01922 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 61481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 3207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.4300 - 5.2200 0.99 2743 153 0.1808 0.2262 REMARK 3 2 5.2200 - 4.1400 0.99 2646 115 0.1531 0.1812 REMARK 3 3 4.1400 - 3.6200 1.00 2582 149 0.1641 0.1873 REMARK 3 4 3.6200 - 3.2900 1.00 2587 133 0.1640 0.2035 REMARK 3 5 3.2900 - 3.0500 0.99 2567 144 0.1819 0.1775 REMARK 3 6 3.0500 - 2.8700 0.99 2583 121 0.1739 0.1928 REMARK 3 7 2.8700 - 2.7300 0.99 2496 157 0.1703 0.1843 REMARK 3 8 2.7300 - 2.6100 1.00 2548 133 0.1630 0.2117 REMARK 3 9 2.6100 - 2.5100 0.99 2525 168 0.1624 0.1713 REMARK 3 10 2.5100 - 2.4200 0.99 2512 152 0.1645 0.2217 REMARK 3 11 2.4200 - 2.3500 0.99 2472 168 0.1596 0.2318 REMARK 3 12 2.3500 - 2.2800 0.99 2527 143 0.1649 0.2003 REMARK 3 13 2.2800 - 2.2200 0.99 2532 104 0.1632 0.2026 REMARK 3 14 2.2200 - 2.1700 0.99 2522 149 0.1604 0.2358 REMARK 3 15 2.1700 - 2.1200 0.99 2501 142 0.1631 0.1955 REMARK 3 16 2.1200 - 2.0700 0.99 2471 159 0.1573 0.2391 REMARK 3 17 2.0700 - 2.0300 0.99 2476 164 0.1586 0.2211 REMARK 3 18 2.0300 - 1.9900 0.99 2498 127 0.1695 0.2080 REMARK 3 19 1.9900 - 1.9600 0.99 2501 133 0.1756 0.2166 REMARK 3 20 1.9600 - 1.9200 0.99 2508 107 0.1796 0.2826 REMARK 3 21 1.9200 - 1.8900 0.99 2469 135 0.1783 0.2269 REMARK 3 22 1.8900 - 1.8600 0.98 2508 121 0.1872 0.2524 REMARK 3 23 1.8600 - 1.8400 0.98 2500 130 0.1866 0.2452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.161 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5712 REMARK 3 ANGLE : 0.903 7756 REMARK 3 CHIRALITY : 0.053 841 REMARK 3 PLANARITY : 0.007 1009 REMARK 3 DIHEDRAL : 10.643 3960 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 68.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5EEM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 0.2 M POTASSIUM REMARK 280 FORMATE, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.73000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.22500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.22500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.73000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 435 REMARK 465 ASN A 436 REMARK 465 ALA A 437 REMARK 465 GLY A 438 REMARK 465 GLY A 439 REMARK 465 SER A 440 REMARK 465 SER A 441 REMARK 465 HIS A 771 REMARK 465 LEU A 772 REMARK 465 SER B 435 REMARK 465 ASN B 436 REMARK 465 ALA B 437 REMARK 465 GLY B 438 REMARK 465 GLY B 439 REMARK 465 SER B 440 REMARK 465 SER B 441 REMARK 465 HIS B 771 REMARK 465 LEU B 772 REMARK 465 ARG B 798 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 497 CD OE1 OE2 REMARK 470 LYS A 518 CG CD CE NZ REMARK 470 ARG A 520 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 602 CG CD OE1 OE2 REMARK 470 LYS A 672 CG CD CE NZ REMARK 470 GLU A 752 CG CD OE1 OE2 REMARK 470 ASP A 770 CG OD1 OD2 REMARK 470 THR A 773 OG1 CG2 REMARK 470 LYS B 518 CG CD CE NZ REMARK 470 ARG B 520 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 524 CD NE CZ NH1 NH2 REMARK 470 GLU B 602 CG CD OE1 OE2 REMARK 470 LYS B 672 CG CD CE NZ REMARK 470 ASP B 770 CG OD1 OD2 REMARK 470 LYS B 776 CD CE NZ REMARK 470 ARG B 788 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 600 -96.76 -125.78 REMARK 500 LEU A 685 -61.75 -130.04 REMARK 500 GLN A 716 37.97 -143.98 REMARK 500 GLU A 742 -110.23 -112.40 REMARK 500 THR B 600 -98.38 -125.42 REMARK 500 LEU B 685 -63.11 -130.27 REMARK 500 GLN B 716 36.38 -140.69 REMARK 500 GLU B 742 -111.31 -110.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 908 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 O REMARK 620 2 ASP A 610 OD1 71.8 REMARK 620 3 ASP A 612 O 100.2 98.6 REMARK 620 4 HIS A 614 O 166.9 95.5 78.2 REMARK 620 5 SER A 633 OG 84.5 112.4 148.4 103.8 REMARK 620 6 LEU A 634 O 77.7 143.2 66.8 112.9 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 907 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 612 OD1 REMARK 620 2 HIS A 614 ND1 98.8 REMARK 620 3 ASP A 705 OD2 107.1 95.1 REMARK 620 4 TO3 A 901 N03 167.0 85.9 84.4 REMARK 620 5 TO3 A 901 O04 149.7 111.2 74.6 26.7 REMARK 620 6 HOH A1034 O 98.0 86.9 154.2 70.1 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 909 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 623 O REMARK 620 2 ASP A 626 O 75.7 REMARK 620 3 VAL A 629 O 117.7 80.8 REMARK 620 4 TYR A 662 O 154.8 115.3 87.1 REMARK 620 5 HOH A1078 O 81.4 86.2 152.9 77.1 REMARK 620 6 HOH A1107 O 69.7 144.5 122.2 94.1 81.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 910 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 624 OE1 REMARK 620 2 GLU A 624 OE2 43.0 REMARK 620 3 ASP A 648 OD2 148.2 163.3 REMARK 620 4 FMT A 904 O1 124.4 89.3 85.8 REMARK 620 5 FMT A 904 O2 79.9 55.7 127.0 45.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 806 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 610 O REMARK 620 2 ASP B 610 OD1 72.0 REMARK 620 3 ASP B 612 O 101.0 99.1 REMARK 620 4 HIS B 614 O 166.9 94.9 79.6 REMARK 620 5 SER B 633 OG 82.9 109.5 150.8 103.0 REMARK 620 6 LEU B 634 O 76.8 143.8 69.1 115.2 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 612 OD1 REMARK 620 2 HIS B 614 ND1 99.5 REMARK 620 3 ASP B 705 OD2 106.5 95.7 REMARK 620 4 TO3 B 801 N03 167.2 85.7 84.4 REMARK 620 5 TO3 B 801 O04 150.6 109.9 70.3 27.3 REMARK 620 6 HOH B 930 O 91.7 99.9 153.8 75.9 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 805 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 623 O REMARK 620 2 ASP B 626 O 76.0 REMARK 620 3 VAL B 629 O 116.5 77.6 REMARK 620 4 TYR B 662 O 156.8 115.1 86.4 REMARK 620 5 HOH B 957 O 83.8 86.5 149.5 76.9 REMARK 620 6 HOH B1031 O 70.6 146.0 123.3 94.3 83.7 REMARK 620 N 1 2 3 4 5 DBREF 7JOM A 440 798 UNP A7YT55 A7YT55_DANRE 288 646 DBREF 7JOM B 440 798 UNP A7YT55 A7YT55_DANRE 288 646 SEQADV 7JOM SER A 435 UNP A7YT55 EXPRESSION TAG SEQADV 7JOM ASN A 436 UNP A7YT55 EXPRESSION TAG SEQADV 7JOM ALA A 437 UNP A7YT55 EXPRESSION TAG SEQADV 7JOM GLY A 438 UNP A7YT55 EXPRESSION TAG SEQADV 7JOM GLY A 439 UNP A7YT55 EXPRESSION TAG SEQADV 7JOM SER B 435 UNP A7YT55 EXPRESSION TAG SEQADV 7JOM ASN B 436 UNP A7YT55 EXPRESSION TAG SEQADV 7JOM ALA B 437 UNP A7YT55 EXPRESSION TAG SEQADV 7JOM GLY B 438 UNP A7YT55 EXPRESSION TAG SEQADV 7JOM GLY B 439 UNP A7YT55 EXPRESSION TAG SEQRES 1 A 364 SER ASN ALA GLY GLY SER SER PRO ILE THR GLY LEU VAL SEQRES 2 A 364 TYR ASP GLN ARG MET MET LEU HIS HIS ASN MET TRP ASP SEQRES 3 A 364 SER HIS HIS PRO GLU LEU PRO GLN ARG ILE SER ARG ILE SEQRES 4 A 364 PHE SER ARG HIS GLU GLU LEU ARG LEU LEU SER ARG CYS SEQRES 5 A 364 HIS ARG ILE PRO ALA ARG LEU ALA THR GLU GLU GLU LEU SEQRES 6 A 364 ALA LEU CYS HIS SER SER LYS HIS ILE SER ILE ILE LYS SEQRES 7 A 364 SER SER GLU HIS MET LYS PRO ARG ASP LEU ASN ARG LEU SEQRES 8 A 364 GLY ASP GLU TYR ASN SER ILE PHE ILE SER ASN GLU SER SEQRES 9 A 364 TYR THR CYS ALA LEU LEU ALA ALA GLY SER CYS PHE ASN SEQRES 10 A 364 SER ALA GLN ALA ILE LEU THR GLY GLN VAL ARG ASN ALA SEQRES 11 A 364 VAL ALA ILE VAL ARG PRO PRO GLY HIS HIS ALA GLU LYS SEQRES 12 A 364 ASP THR ALA CYS GLY PHE CYS PHE PHE ASN THR ALA ALA SEQRES 13 A 364 LEU THR ALA ARG TYR ALA GLN SER ILE THR ARG GLU SER SEQRES 14 A 364 LEU ARG VAL LEU ILE VAL ASP TRP ASP VAL HIS HIS GLY SEQRES 15 A 364 ASN GLY THR GLN HIS ILE PHE GLU GLU ASP ASP SER VAL SEQRES 16 A 364 LEU TYR ILE SER LEU HIS ARG TYR GLU ASP GLY ALA PHE SEQRES 17 A 364 PHE PRO ASN SER GLU ASP ALA ASN TYR ASP LYS VAL GLY SEQRES 18 A 364 LEU GLY LYS GLY ARG GLY TYR ASN VAL ASN ILE PRO TRP SEQRES 19 A 364 ASN GLY GLY LYS MET GLY ASP PRO GLU TYR MET ALA ALA SEQRES 20 A 364 PHE HIS HIS LEU VAL MET PRO ILE ALA ARG GLU PHE ALA SEQRES 21 A 364 PRO GLU LEU VAL LEU VAL SER ALA GLY PHE ASP ALA ALA SEQRES 22 A 364 ARG GLY ASP PRO LEU GLY GLY PHE GLN VAL THR PRO GLU SEQRES 23 A 364 GLY TYR ALA HIS LEU THR HIS GLN LEU MET SER LEU ALA SEQRES 24 A 364 ALA GLY ARG VAL LEU ILE ILE LEU GLU GLY GLY TYR ASN SEQRES 25 A 364 LEU THR SER ILE SER GLU SER MET SER MET CYS THR SER SEQRES 26 A 364 MET LEU LEU GLY ASP SER PRO PRO SER LEU ASP HIS LEU SEQRES 27 A 364 THR PRO LEU LYS THR SER ALA THR VAL SER ILE ASN ASN SEQRES 28 A 364 VAL LEU ARG ALA HIS ALA PRO PHE TRP SER SER LEU ARG SEQRES 1 B 364 SER ASN ALA GLY GLY SER SER PRO ILE THR GLY LEU VAL SEQRES 2 B 364 TYR ASP GLN ARG MET MET LEU HIS HIS ASN MET TRP ASP SEQRES 3 B 364 SER HIS HIS PRO GLU LEU PRO GLN ARG ILE SER ARG ILE SEQRES 4 B 364 PHE SER ARG HIS GLU GLU LEU ARG LEU LEU SER ARG CYS SEQRES 5 B 364 HIS ARG ILE PRO ALA ARG LEU ALA THR GLU GLU GLU LEU SEQRES 6 B 364 ALA LEU CYS HIS SER SER LYS HIS ILE SER ILE ILE LYS SEQRES 7 B 364 SER SER GLU HIS MET LYS PRO ARG ASP LEU ASN ARG LEU SEQRES 8 B 364 GLY ASP GLU TYR ASN SER ILE PHE ILE SER ASN GLU SER SEQRES 9 B 364 TYR THR CYS ALA LEU LEU ALA ALA GLY SER CYS PHE ASN SEQRES 10 B 364 SER ALA GLN ALA ILE LEU THR GLY GLN VAL ARG ASN ALA SEQRES 11 B 364 VAL ALA ILE VAL ARG PRO PRO GLY HIS HIS ALA GLU LYS SEQRES 12 B 364 ASP THR ALA CYS GLY PHE CYS PHE PHE ASN THR ALA ALA SEQRES 13 B 364 LEU THR ALA ARG TYR ALA GLN SER ILE THR ARG GLU SER SEQRES 14 B 364 LEU ARG VAL LEU ILE VAL ASP TRP ASP VAL HIS HIS GLY SEQRES 15 B 364 ASN GLY THR GLN HIS ILE PHE GLU GLU ASP ASP SER VAL SEQRES 16 B 364 LEU TYR ILE SER LEU HIS ARG TYR GLU ASP GLY ALA PHE SEQRES 17 B 364 PHE PRO ASN SER GLU ASP ALA ASN TYR ASP LYS VAL GLY SEQRES 18 B 364 LEU GLY LYS GLY ARG GLY TYR ASN VAL ASN ILE PRO TRP SEQRES 19 B 364 ASN GLY GLY LYS MET GLY ASP PRO GLU TYR MET ALA ALA SEQRES 20 B 364 PHE HIS HIS LEU VAL MET PRO ILE ALA ARG GLU PHE ALA SEQRES 21 B 364 PRO GLU LEU VAL LEU VAL SER ALA GLY PHE ASP ALA ALA SEQRES 22 B 364 ARG GLY ASP PRO LEU GLY GLY PHE GLN VAL THR PRO GLU SEQRES 23 B 364 GLY TYR ALA HIS LEU THR HIS GLN LEU MET SER LEU ALA SEQRES 24 B 364 ALA GLY ARG VAL LEU ILE ILE LEU GLU GLY GLY TYR ASN SEQRES 25 B 364 LEU THR SER ILE SER GLU SER MET SER MET CYS THR SER SEQRES 26 B 364 MET LEU LEU GLY ASP SER PRO PRO SER LEU ASP HIS LEU SEQRES 27 B 364 THR PRO LEU LYS THR SER ALA THR VAL SER ILE ASN ASN SEQRES 28 B 364 VAL LEU ARG ALA HIS ALA PRO PHE TRP SER SER LEU ARG HET TO3 A 901 32 HET EDO A 902 4 HET EDO A 903 4 HET FMT A 904 3 HET FMT A 905 3 HET FMT A 906 3 HET ZN A 907 1 HET K A 908 1 HET K A 909 1 HET K A 910 1 HET TO3 B 801 32 HET EDO B 802 4 HET FMT B 803 3 HET ZN B 804 1 HET K B 805 1 HET K B 806 1 HETNAM TO3 N-HYDROXY-4-({[(PYRIDIN-3-YL)METHYL][(2,3,4,5- HETNAM 2 TO3 TETRAFLUOROPHENYL)SULFONYL]AMINO}METHYL)BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 TO3 2(C20 H15 F4 N3 O4 S) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 6 FMT 4(C H2 O2) FORMUL 9 ZN 2(ZN 2+) FORMUL 10 K 5(K 1+) FORMUL 19 HOH *381(H2 O) HELIX 1 AA1 ASP A 449 HIS A 455 5 7 HELIX 2 AA2 PRO A 467 LEU A 480 1 14 HELIX 3 AA3 LEU A 482 CYS A 486 5 5 HELIX 4 AA4 THR A 495 ALA A 500 1 6 HELIX 5 AA5 SER A 504 SER A 514 1 11 HELIX 6 AA6 GLU A 515 MET A 517 5 3 HELIX 7 AA7 LYS A 518 GLU A 528 1 11 HELIX 8 AA8 GLU A 537 THR A 558 1 22 HELIX 9 AA9 ASN A 587 THR A 600 1 14 HELIX 10 AB1 GLY A 616 GLU A 624 1 9 HELIX 11 AB2 SER A 646 ASN A 650 5 5 HELIX 12 AB3 LEU A 656 ARG A 660 5 5 HELIX 13 AB4 GLY A 674 LEU A 685 1 12 HELIX 14 AB5 LEU A 685 ALA A 694 1 10 HELIX 15 AB6 THR A 718 MET A 730 1 13 HELIX 16 AB7 SER A 731 GLY A 735 5 5 HELIX 17 AB8 ASN A 746 LEU A 762 1 17 HELIX 18 AB9 LYS A 776 ALA A 791 1 16 HELIX 19 AC1 TRP A 794 ARG A 798 5 5 HELIX 20 AC2 ASP B 449 HIS B 455 5 7 HELIX 21 AC3 PRO B 467 LEU B 480 1 14 HELIX 22 AC4 LEU B 482 CYS B 486 5 5 HELIX 23 AC5 THR B 495 ALA B 500 1 6 HELIX 24 AC6 SER B 504 SER B 514 1 11 HELIX 25 AC7 GLU B 515 MET B 517 5 3 HELIX 26 AC8 LYS B 518 GLU B 528 1 11 HELIX 27 AC9 GLU B 537 THR B 558 1 22 HELIX 28 AD1 ASN B 587 ILE B 599 1 13 HELIX 29 AD2 GLY B 616 GLU B 624 1 9 HELIX 30 AD3 SER B 646 ASN B 650 5 5 HELIX 31 AD4 LEU B 656 ARG B 660 5 5 HELIX 32 AD5 GLY B 674 LEU B 685 1 12 HELIX 33 AD6 LEU B 685 ALA B 694 1 10 HELIX 34 AD7 THR B 718 MET B 730 1 13 HELIX 35 AD8 SER B 731 GLY B 735 5 5 HELIX 36 AD9 ASN B 746 LEU B 762 1 17 HELIX 37 AE1 LYS B 776 ALA B 791 1 16 SHEET 1 AA1 8 HIS A 487 ARG A 488 0 SHEET 2 AA1 8 THR A 444 VAL A 447 1 N THR A 444 O HIS A 487 SHEET 3 AA1 8 ASN A 563 ALA A 566 1 O ASN A 563 N GLY A 445 SHEET 4 AA1 8 VAL A 737 LEU A 741 1 O ILE A 739 N ALA A 566 SHEET 5 AA1 8 LEU A 697 ALA A 702 1 N VAL A 700 O ILE A 740 SHEET 6 AA1 8 VAL A 606 ASP A 610 1 N LEU A 607 O LEU A 699 SHEET 7 AA1 8 VAL A 629 ARG A 636 1 O LEU A 630 N ILE A 608 SHEET 8 AA1 8 ASN A 663 TRP A 668 1 O VAL A 664 N TYR A 631 SHEET 1 AA2 8 HIS B 487 ARG B 488 0 SHEET 2 AA2 8 THR B 444 VAL B 447 1 N THR B 444 O HIS B 487 SHEET 3 AA2 8 ASN B 563 ALA B 566 1 O ASN B 563 N GLY B 445 SHEET 4 AA2 8 VAL B 737 LEU B 741 1 O ILE B 739 N ALA B 566 SHEET 5 AA2 8 LEU B 697 ALA B 702 1 N VAL B 700 O LEU B 738 SHEET 6 AA2 8 VAL B 606 ASP B 610 1 N LEU B 607 O LEU B 699 SHEET 7 AA2 8 VAL B 629 ARG B 636 1 O LEU B 630 N ILE B 608 SHEET 8 AA2 8 ASN B 663 TRP B 668 1 O VAL B 664 N TYR B 631 LINK O ASP A 610 K K A 908 1555 1555 2.84 LINK OD1 ASP A 610 K K A 908 1555 1555 2.81 LINK OD1 ASP A 612 ZN ZN A 907 1555 1555 2.02 LINK O ASP A 612 K K A 908 1555 1555 2.63 LINK ND1 HIS A 614 ZN ZN A 907 1555 1555 2.14 LINK O HIS A 614 K K A 908 1555 1555 2.69 LINK O PHE A 623 K K A 909 1555 1555 2.70 LINK OE1 GLU A 624 K K A 910 1555 1555 2.81 LINK OE2 GLU A 624 K K A 910 1555 1555 3.11 LINK O ASP A 626 K K A 909 1555 1555 2.86 LINK O VAL A 629 K K A 909 1555 1555 2.70 LINK OG SER A 633 K K A 908 1555 1555 2.80 LINK O LEU A 634 K K A 908 1555 1555 2.72 LINK OD2 ASP A 648 K K A 910 1555 1555 3.44 LINK O TYR A 662 K K A 909 1555 1555 2.77 LINK OD2 ASP A 705 ZN ZN A 907 1555 1555 2.04 LINK N03 TO3 A 901 ZN ZN A 907 1555 1555 2.63 LINK O04 TO3 A 901 ZN ZN A 907 1555 1555 2.38 LINK O1 FMT A 904 K K A 910 1555 1555 2.31 LINK O2 FMT A 904 K K A 910 1555 1555 3.05 LINK ZN ZN A 907 O HOH A1034 1555 1555 2.09 LINK K K A 909 O HOH A1078 1555 1555 2.73 LINK K K A 909 O HOH A1107 1555 1555 2.99 LINK O ASP B 610 K K B 806 1555 1555 2.89 LINK OD1 ASP B 610 K K B 806 1555 1555 2.76 LINK OD1 ASP B 612 ZN ZN B 804 1555 1555 2.08 LINK O ASP B 612 K K B 806 1555 1555 2.61 LINK ND1 HIS B 614 ZN ZN B 804 1555 1555 2.11 LINK O HIS B 614 K K B 806 1555 1555 2.69 LINK O PHE B 623 K K B 805 1555 1555 2.65 LINK O ASP B 626 K K B 805 1555 1555 2.87 LINK O VAL B 629 K K B 805 1555 1555 2.67 LINK OG SER B 633 K K B 806 1555 1555 2.75 LINK O LEU B 634 K K B 806 1555 1555 2.67 LINK O TYR B 662 K K B 805 1555 1555 2.81 LINK OD2 ASP B 705 ZN ZN B 804 1555 1555 2.02 LINK N03 TO3 B 801 ZN ZN B 804 1555 1555 2.58 LINK O04 TO3 B 801 ZN ZN B 804 1555 1555 2.36 LINK ZN ZN B 804 O HOH B 930 1555 1555 1.97 LINK K K B 805 O HOH B 957 1555 1555 2.73 LINK K K B 805 O HOH B1031 1555 1555 2.83 CISPEP 1 ARG A 569 PRO A 570 0 -2.90 CISPEP 2 PHE A 643 PRO A 644 0 8.23 CISPEP 3 ARG B 569 PRO B 570 0 -3.33 CISPEP 4 PHE B 643 PRO B 644 0 6.69 CRYST1 75.460 96.450 96.450 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013252 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010368 0.00000