HEADER HYDROLASE/HYDROLASE INHIBITOR 07-AUG-20 7JOW TITLE CRYSTAL STRUCTURE OF BBKI COMPLEXED WITH HUMAN KALLIKREIN 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KALLIKREIN 4 (PROSTASE, ENAMEL MATRIX, PROSTATE), ISOFORM COMPND 3 CRA_A; COMPND 4 CHAIN: E; COMPND 5 SYNONYM: KALLIKREIN B1,KALLIKREIN-4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: KUNITZ-TYPE INIHIBITOR; COMPND 9 CHAIN: I; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLK4, KLNB1, HCG_1641510; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: BAUHINIA BAUHINIOIDES; SOURCE 10 ORGANISM_TAXID: 166014; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, PLANT PROTEIN, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.LI,A.WLODAWER,A.GUSTCHINA REVDAT 3 18-OCT-23 7JOW 1 REMARK REVDAT 2 11-AUG-21 7JOW 1 JRNL REVDAT 1 21-JUL-21 7JOW 0 JRNL AUTH M.LI,J.SRP,M.MARES,A.WLODAWER,A.GUSTCHINA JRNL TITL STRUCTURAL STUDIES OF COMPLEXES OF KALLIKREIN 4 WITH JRNL TITL 2 WILD-TYPE AND MUTATED FORMS OF THE KUNITZ-TYPE INHIBITOR JRNL TITL 3 BBKI JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 77 1084 2021 JRNL REFN ESSN 1399-0047 JRNL DOI 10.1107/S2059798321006483 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 33971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 37.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 1.08000 REMARK 3 B12 (A**2) : -0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.086 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3065 ; 0.019 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2786 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4179 ; 2.276 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6517 ; 1.556 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ;22.106 ; 5.697 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;36.651 ;23.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;17.672 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;25.598 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4245 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 618 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 16 E 244 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8160 16.0589 13.3115 REMARK 3 T TENSOR REMARK 3 T11: 0.3298 T22: 0.0589 REMARK 3 T33: 0.0722 T12: 0.0714 REMARK 3 T13: -0.0718 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.0683 L22: 1.6576 REMARK 3 L33: 1.6252 L12: -0.4294 REMARK 3 L13: -0.5887 L23: 0.8421 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: 0.0271 S13: 0.0952 REMARK 3 S21: -0.1818 S22: -0.1205 S23: 0.0425 REMARK 3 S31: -0.1228 S32: -0.2280 S33: 0.1218 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 1 I 163 REMARK 3 ORIGIN FOR THE GROUP (A): 52.7746 4.1534 15.5093 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.0682 REMARK 3 T33: 0.0794 T12: 0.0888 REMARK 3 T13: -0.0277 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 2.3994 L22: 0.5581 REMARK 3 L33: 2.0309 L12: -0.7644 REMARK 3 L13: 0.6221 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.1054 S12: 0.1071 S13: 0.1806 REMARK 3 S21: 0.0478 S22: -0.0132 S23: -0.0849 REMARK 3 S31: 0.1885 S32: 0.2519 S33: 0.1186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7JOW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39402 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 43.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.20400 REMARK 200 FOR SHELL : 1.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JOD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M AMMOUNIUM SULFATE, 2% PEG400 10MM REMARK 280 CDCL2, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.53200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.76600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.64900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.88300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 139.41500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.53200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 55.76600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.88300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.64900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 139.41500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH I 992 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD CD E 501 O HOH E 669 1.73 REMARK 500 O HOH E 700 O HOH E 705 1.79 REMARK 500 O HOH I 924 O HOH I 981 1.89 REMARK 500 O HOH E 696 O HOH E 710 1.96 REMARK 500 O LYS I 144 O HOH I 901 1.98 REMARK 500 CL CL I 803 O HOH I 971 2.03 REMARK 500 O HOH I 966 O HOH I 985 2.11 REMARK 500 O VAL I 139 O HOH I 901 2.11 REMARK 500 SG CYS E 168 O HOH E 636 2.12 REMARK 500 O HOH E 692 O HOH E 702 2.14 REMARK 500 O HOH E 616 O HOH E 675 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD CD E 501 O HOH I 904 9665 1.66 REMARK 500 O7 2PE I 801 O7 2PE I 801 8555 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU E 93 CD GLU E 93 OE1 0.077 REMARK 500 GLU E 93 CD GLU E 93 OE2 0.068 REMARK 500 SER I 1 CA SER I 1 CB 0.105 REMARK 500 SER I 25 C SER I 25 O 0.121 REMARK 500 GLU I 115 CD GLU I 115 OE1 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG E 90 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG E 90 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU E 99 CB - CG - CD1 ANGL. DEV. = 12.7 DEGREES REMARK 500 CYS E 128 CB - CA - C ANGL. DEV. = 9.3 DEGREES REMARK 500 CYS E 168 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG I 129 CB - CG - CD ANGL. DEV. = 22.0 DEGREES REMARK 500 ARG I 129 CG - CD - NE ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG I 129 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG I 129 NE - CZ - NH1 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG I 129 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG I 160 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS E 71 -68.39 -135.16 REMARK 500 LEU E 99 -9.76 87.14 REMARK 500 SER E 214 -73.03 -124.18 REMARK 500 SER I 25 2.67 85.07 REMARK 500 GLU I 39 -123.62 16.46 REMARK 500 ALA I 40 -136.56 53.06 REMARK 500 ARG I 64 35.74 -84.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER I 1 SER I 2 -146.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE I 801 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD E 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 25 NE2 REMARK 620 2 GLU E 77 OE2 103.2 REMARK 620 3 HOH E 669 O 80.8 83.2 REMARK 620 4 SER I 25 O 102.6 19.0 101.9 REMARK 620 5 HIS I 26 ND1 99.8 21.0 103.1 3.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD E 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 25 NE2 REMARK 620 2 SER I 25 O 71.5 REMARK 620 3 HIS I 28 NE2 71.6 4.4 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7JOD RELATED DB: PDB REMARK 900 P3121 REMARK 900 RELATED ID: 7JOE RELATED DB: PDB REMARK 900 P61 DBREF1 7JOW E 16 244 UNP A0A0C4DFQ5_HUMAN DBREF2 7JOW E A0A0C4DFQ5 31 253 DBREF 7JOW I 1 163 UNP Q6VEQ7 Q6VEQ7_BAUBA 19 181 SEQADV 7JOW GLY I 0 UNP Q6VEQ7 EXPRESSION TAG SEQRES 1 E 223 ILE ILE ASN GLY GLU ASP CYS SER PRO HIS SER GLN PRO SEQRES 2 E 223 TRP GLN ALA ALA LEU VAL MET GLU ASN GLU LEU PHE CYS SEQRES 3 E 223 SER GLY VAL LEU VAL HIS PRO GLN TRP VAL LEU SER ALA SEQRES 4 E 223 ALA HIS CYS PHE GLN ASN SER TYR THR ILE GLY LEU GLY SEQRES 5 E 223 LEU HIS SER LEU GLU ALA ASP GLN GLU PRO GLY SER GLN SEQRES 6 E 223 MET VAL GLU ALA SER LEU SER VAL ARG HIS PRO GLU TYR SEQRES 7 E 223 ASN ARG PRO LEU LEU ALA ASN ASP LEU MET LEU ILE LYS SEQRES 8 E 223 LEU ASP GLU SER VAL SER GLU SER ASP THR ILE ARG SER SEQRES 9 E 223 ILE SER ILE ALA SER GLN CYS PRO THR ALA GLY ASN SER SEQRES 10 E 223 CYS LEU VAL SER GLY TRP GLY LEU LEU ALA ASN GLY ARG SEQRES 11 E 223 MET PRO THR VAL LEU GLN CYS VAL ASN VAL SER VAL VAL SEQRES 12 E 223 SER GLU GLU VAL CYS SER LYS LEU TYR ASP PRO LEU TYR SEQRES 13 E 223 HIS PRO SER MET PHE CYS ALA GLY GLY GLY GLN ASP GLN SEQRES 14 E 223 LYS ASP SER CYS ASN GLY ASP SER GLY GLY PRO LEU ILE SEQRES 15 E 223 CYS ASN GLY TYR LEU GLN GLY LEU VAL SER PHE GLY LYS SEQRES 16 E 223 ALA PRO CYS GLY GLN VAL GLY VAL PRO GLY VAL TYR THR SEQRES 17 E 223 ASN LEU CYS LYS PHE THR GLU TRP ILE GLU LYS THR VAL SEQRES 18 E 223 GLN ALA SEQRES 1 I 164 GLY SER SER VAL VAL VAL ASP THR ASN GLY GLN PRO VAL SEQRES 2 I 164 SER ASN GLY ALA ASP ALA TYR TYR LEU VAL PRO VAL SER SEQRES 3 I 164 HIS GLY HIS ALA GLY LEU ALA LEU ALA LYS ILE GLY ASN SEQRES 4 I 164 GLU ALA GLU PRO ARG ALA VAL VAL LEU ASP PRO HIS HIS SEQRES 5 I 164 ARG PRO GLY LEU PRO VAL ARG PHE GLU SER PRO LEU ARG SEQRES 6 I 164 ILE ASN ILE ILE LYS GLU SER TYR PHE LEU ASN ILE LYS SEQRES 7 I 164 PHE GLY PRO SER SER SER ASP SER GLY VAL TRP ASP VAL SEQRES 8 I 164 ILE GLN GLN ASP PRO ILE GLY LEU ALA VAL LYS VAL THR SEQRES 9 I 164 ASP THR LYS SER LEU LEU GLY PRO PHE LYS VAL GLU LYS SEQRES 10 I 164 GLU GLY GLU GLY TYR LYS ILE VAL TYR TYR PRO GLU ARG SEQRES 11 I 164 GLY GLN THR GLY LEU ASP ILE GLY LEU VAL HIS ARG ASN SEQRES 12 I 164 ASP LYS TYR TYR LEU ALA VAL LYS ASP GLY GLU PRO CYS SEQRES 13 I 164 VAL PHE LYS ILE ARG LYS ALA THR HET CD E 501 2 HET 2PE I 801 7 HET URE I 802 4 HET CL I 803 1 HETNAM CD CADMIUM ION HETNAM 2PE NONAETHYLENE GLYCOL HETNAM URE UREA HETNAM CL CHLORIDE ION FORMUL 3 CD CD 2+ FORMUL 4 2PE C18 H38 O10 FORMUL 5 URE C H4 N2 O FORMUL 6 CL CL 1- FORMUL 7 HOH *215(H2 O) HELIX 1 AA1 ALA E 55 PHE E 59 5 5 HELIX 2 AA2 GLU E 74 GLU E 77 5 5 HELIX 3 AA3 SER E 164 ASP E 173 1 10 HELIX 4 AA4 PHE E 234 ALA E 244 1 11 SHEET 1 AA1 7 GLU E 20 ASP E 21 0 SHEET 2 AA1 7 GLN E 156 SER E 161 -1 O CYS E 157 N GLU E 20 SHEET 3 AA1 7 SER E 135 GLY E 140 -1 N GLY E 140 O GLN E 156 SHEET 4 AA1 7 PRO E 198 CYS E 201 -1 O ILE E 200 N LEU E 137 SHEET 5 AA1 7 TYR E 208 PHE E 215 -1 O GLN E 210 N LEU E 199 SHEET 6 AA1 7 GLY E 226 ASN E 230 -1 O VAL E 227 N PHE E 215 SHEET 7 AA1 7 MET E 180 ALA E 183 -1 N PHE E 181 O TYR E 228 SHEET 1 AA2 7 GLN E 30 MET E 35 0 SHEET 2 AA2 7 GLU E 38 HIS E 48 -1 O CYS E 42 N LEU E 33 SHEET 3 AA2 7 TRP E 51 SER E 54 -1 O LEU E 53 N VAL E 45 SHEET 4 AA2 7 MET E 104 LEU E 108 -1 O ILE E 106 N VAL E 52 SHEET 5 AA2 7 GLN E 81 ARG E 90 -1 N VAL E 89 O LEU E 105 SHEET 6 AA2 7 TYR E 63 LEU E 67 -1 N LEU E 67 O GLN E 81 SHEET 7 AA2 7 GLN E 30 MET E 35 -1 N ALA E 32 O GLY E 66 SHEET 1 AA3 2 TYR I 19 PRO I 23 0 SHEET 2 AA3 2 PHE I 157 LYS I 161 -1 O ARG I 160 N TYR I 20 SHEET 1 AA4 6 GLY I 30 ALA I 34 0 SHEET 2 AA4 6 ALA I 44 ASP I 48 -1 O ASP I 48 N GLY I 30 SHEET 3 AA4 6 LYS I 144 VAL I 149 -1 O LEU I 147 N VAL I 45 SHEET 4 AA4 6 LEU I 134 ARG I 141 -1 N GLY I 137 O ALA I 148 SHEET 5 AA4 6 GLY I 120 TYR I 125 -1 N TYR I 125 O LEU I 134 SHEET 6 AA4 6 PHE I 112 GLU I 117 -1 N GLU I 117 O GLY I 120 SHEET 1 AA5 2 VAL I 57 GLU I 60 0 SHEET 2 AA5 2 ASN I 75 PHE I 78 -1 O ASN I 75 N GLU I 60 SHEET 1 AA6 2 VAL I 87 GLN I 93 0 SHEET 2 AA6 2 GLY I 97 THR I 103 -1 O GLY I 97 N GLN I 93 SSBOND 1 CYS E 22 CYS E 157 1555 1555 2.01 SSBOND 2 CYS E 42 CYS E 58 1555 1555 2.03 SSBOND 3 CYS E 128 CYS E 232 1555 1555 2.17 SSBOND 4 CYS E 136 CYS E 201 1555 1555 2.08 SSBOND 5 CYS E 168 CYS E 182 1555 1555 2.15 SSBOND 6 CYS E 191 CYS E 220 1555 1555 2.85 LINK NE2 HIS E 25 CD A CD E 501 1555 1555 2.63 LINK NE2 HIS E 25 CD B CD E 501 1555 1555 2.20 LINK OE2 GLU E 77 CD A CD E 501 1555 1555 2.48 LINK CD A CD E 501 O HOH E 669 1555 1555 2.18 LINK CD A CD E 501 O ASER I 25 9655 1555 2.11 LINK CD B CD E 501 O BSER I 25 9655 1555 2.13 LINK CD A CD E 501 ND1 HIS I 26 9655 1555 2.34 LINK CD B CD E 501 NE2 HIS I 28 9655 1555 2.69 CISPEP 1 ARG E 96 PRO E 97 0 3.83 CISPEP 2 ASP E 173 PRO E 174 0 2.14 CISPEP 3 ALA E 218 PRO E 219 0 -6.82 CISPEP 4 ARG I 52 PRO I 53 0 7.75 CISPEP 5 ASP I 94 PRO I 95 0 -2.88 CRYST1 100.495 100.495 167.298 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009951 0.005745 0.000000 0.00000 SCALE2 0.000000 0.011490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005977 0.00000