HEADER VIRAL PROTEIN 07-AUG-20 7JPE TITLE ROOM TEMPERATURE STRUCTURE OF SARS-COV-2 NSP10/NSP16 METHYLTRANSFERASE TITLE 2 IN A COMPLEX WITH M7GPPPA CAP-0 AND SAM DETERMINED BY FIXED-TARGET TITLE 3 SERIAL CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2'-O-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 16; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NON-STRUCTURAL PROTEIN 10; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VARIANT: MAGIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMCSG53; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 15 2; SOURCE 16 ORGANISM_COMMON: 2019-NCOV; SOURCE 17 ORGANISM_TAXID: 2697049; SOURCE 18 GENE: REP, 1A-1B; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 22 EXPRESSION_SYSTEM_VARIANT: MAGIC KEYWDS SARS COV-2, SERIAL CRYSTALLOGRAPHY, METHYLTRANSFERASE, M7GPPPA, CAP- KEYWDS 2 0, S-ADENOSYLHOMOMETHIONINE, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WILAMOWSKI,D.A.SHERRELL,G.MINASOV,Y.KIM,L.SHUVALOVA,A.LAVENS, AUTHOR 2 R.CHARD,M.ROSAS-LEMUS,N.MALTSEVA,R.JEDRZEJCZAK,K.MICHALSKA, AUTHOR 3 K.J.F.SATCHELL,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 4 INFECTIOUS DISEASES (CSGID) REVDAT 4 28-FEB-24 7JPE 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL ATOM REVDAT 3 18-OCT-23 7JPE 1 REMARK REVDAT 2 28-JUL-21 7JPE 1 JRNL REVDAT 1 26-AUG-20 7JPE 0 JRNL AUTH M.WILAMOWSKI,D.A.SHERRELL,G.MINASOV,Y.KIM,L.SHUVALOVA, JRNL AUTH 2 A.LAVENS,R.CHARD,N.MALTSEVA,R.JEDRZEJCZAK,M.ROSAS-LEMUS, JRNL AUTH 3 N.SAINT,I.T.FOSTER,K.MICHALSKA,K.J.F.SATCHELL,A.JOACHIMIAK JRNL TITL 2'-O METHYLATION OF RNA CAP IN SARS-COV-2 CAPTURED BY SERIAL JRNL TITL 2 CRYSTALLOGRAPHY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33972410 JRNL DOI 10.1073/PNAS.2100170118 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3171 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3790 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3193 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : -0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.975 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3398 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3041 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4634 ; 1.351 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7091 ; 0.370 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 2.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;26.054 ;23.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ; 9.069 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 4.736 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3759 ; 0.053 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 665 ; 0.049 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 71.3489 -46.7669 -6.7534 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.1703 REMARK 3 T33: 0.1308 T12: -0.1039 REMARK 3 T13: 0.0570 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 3.7078 L22: 5.3587 REMARK 3 L33: 2.1823 L12: -1.4822 REMARK 3 L13: 0.1439 L23: -1.6760 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: 0.2079 S13: 0.4371 REMARK 3 S21: -0.2207 S22: 0.1467 S23: -0.5324 REMARK 3 S31: -0.3709 S32: 0.2449 S33: -0.0331 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 61.7196 -63.8953 8.1242 REMARK 3 T TENSOR REMARK 3 T11: 0.0677 T22: 0.1135 REMARK 3 T33: 0.0279 T12: -0.0642 REMARK 3 T13: -0.0097 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 3.0269 L22: 1.9230 REMARK 3 L33: 1.6248 L12: 0.1423 REMARK 3 L13: -0.4899 L23: -0.1646 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: -0.2514 S13: -0.2627 REMARK 3 S21: 0.2254 S22: -0.0084 S23: 0.0164 REMARK 3 S31: 0.0853 S32: -0.1367 S33: -0.0425 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): 59.9497 -52.6093 -0.7255 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.1157 REMARK 3 T33: 0.0202 T12: -0.0376 REMARK 3 T13: 0.0028 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 2.4510 L22: 2.1172 REMARK 3 L33: 2.0877 L12: 0.2530 REMARK 3 L13: -0.3378 L23: -0.3747 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: 0.1763 S13: 0.1853 REMARK 3 S21: -0.0568 S22: 0.0679 S23: -0.0311 REMARK 3 S31: -0.0733 S32: -0.1611 S33: -0.0983 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 49.4220 -49.9336 16.5692 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.2432 REMARK 3 T33: 0.1519 T12: -0.0154 REMARK 3 T13: 0.1150 T23: -0.0998 REMARK 3 L TENSOR REMARK 3 L11: 3.1675 L22: 5.9514 REMARK 3 L33: 4.7998 L12: 1.2109 REMARK 3 L13: 0.0779 L23: 2.9964 REMARK 3 S TENSOR REMARK 3 S11: 0.3057 S12: -0.7195 S13: 0.5926 REMARK 3 S21: 0.4878 S22: -0.3097 S23: 0.5785 REMARK 3 S31: -0.3198 S32: -0.3632 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 60.3795 -95.9854 11.2981 REMARK 3 T TENSOR REMARK 3 T11: 0.5557 T22: 0.6324 REMARK 3 T33: 0.6436 T12: -0.2125 REMARK 3 T13: -0.0379 T23: 0.1982 REMARK 3 L TENSOR REMARK 3 L11: 12.8891 L22: 8.0932 REMARK 3 L33: 0.6240 L12: 10.2123 REMARK 3 L13: -0.7559 L23: -0.5950 REMARK 3 S TENSOR REMARK 3 S11: 0.1470 S12: 0.2581 S13: -0.1607 REMARK 3 S21: 0.1435 S22: 0.1598 S23: -0.1018 REMARK 3 S31: 0.3739 S32: -0.5592 S33: -0.3068 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 69.8611 -76.8202 14.7493 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.1202 REMARK 3 T33: 0.1356 T12: 0.0042 REMARK 3 T13: -0.0376 T23: 0.1062 REMARK 3 L TENSOR REMARK 3 L11: 5.6300 L22: 3.7045 REMARK 3 L33: 1.3848 L12: 0.7871 REMARK 3 L13: 0.4321 L23: -0.0907 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: -0.4613 S13: -0.6478 REMARK 3 S21: 0.2416 S22: 0.0020 S23: -0.3257 REMARK 3 S31: 0.2661 S32: 0.1834 S33: 0.0563 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): 52.6277 -83.7152 18.5968 REMARK 3 T TENSOR REMARK 3 T11: 0.0509 T22: 0.1479 REMARK 3 T33: 0.2156 T12: -0.0214 REMARK 3 T13: -0.0095 T23: 0.1570 REMARK 3 L TENSOR REMARK 3 L11: 8.4047 L22: 9.6065 REMARK 3 L33: 5.6764 L12: 1.9043 REMARK 3 L13: -6.6722 L23: 0.3508 REMARK 3 S TENSOR REMARK 3 S11: 0.2171 S12: 0.3087 S13: -0.0825 REMARK 3 S21: 0.3059 S22: -0.2629 S23: -0.0307 REMARK 3 S31: -0.1226 S32: -0.3240 S33: 0.0458 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 92 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): 70.5751 -82.8068 21.6153 REMARK 3 T TENSOR REMARK 3 T11: 0.3158 T22: 0.2141 REMARK 3 T33: 0.2916 T12: -0.0556 REMARK 3 T13: -0.1064 T23: 0.2053 REMARK 3 L TENSOR REMARK 3 L11: 4.4970 L22: 2.5120 REMARK 3 L33: 6.4166 L12: -0.8710 REMARK 3 L13: 1.2010 L23: -0.4470 REMARK 3 S TENSOR REMARK 3 S11: 0.1044 S12: -0.5161 S13: -0.8368 REMARK 3 S21: 0.4161 S22: 0.0398 S23: -0.2322 REMARK 3 S31: 0.9111 S32: 0.0371 S33: -0.1442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7JPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : SAGITTALLY FOCUSING MONO AND REMARK 200 VERTICALLY FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46273 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 49.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 50.51 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.42 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6WQ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 4.0 MG/ML (NSP10/NSP16 1:1), REMARK 280 0.15 M CACL, 0.01 M TRIS-HCL, 2 MM SAM, 1 MM TCEP, 5% GLYCEROL, REMARK 280 PH 7.5. PRECIPITATION BUFFER: 0.1M MES PH 6.5, 0.9 M NAF. BATCH REMARK 280 CRYSTALLIZATION: 100 UL OF PROTEIN MIXED WITH 100 UL OF REMARK 280 PRECIPITATION BUFFER IN 500 UL POLYPROPYLANE TUBE. TWO DAYS REMARK 280 BEFORE DATA COLLECTION 1 MM EDTA WAS ADDED TO BATCH REMARK 280 CRYSTALLIZATION. CRYSTAL WERE SOAKED WITH M7GPPPA (0.5 MM) FOR REMARK 280 10 MINUTES BEFORE DATA COLLECTION., BATCH MODE, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.59533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.19067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.19067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.59533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 ASN B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 ASN B 10 REMARK 465 SER B 11 REMARK 465 THR B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 SER B 15 REMARK 465 PHE B 16 REMARK 465 CYS B 17 REMARK 465 LEU B 133 REMARK 465 ARG B 134 REMARK 465 GLU B 135 REMARK 465 PRO B 136 REMARK 465 MET B 137 REMARK 465 LEU B 138 REMARK 465 GLN B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 143 98.30 -66.48 REMARK 500 GLU A 147 -114.38 -94.71 REMARK 500 ASN A 210 89.48 70.35 REMARK 500 SER A 261 60.91 -100.56 REMARK 500 ARG A 283 164.50 179.59 REMARK 500 ASN A 297 -163.50 -112.22 REMARK 500 ALA B 20 131.16 -179.84 REMARK 500 HIS B 48 41.61 70.63 REMARK 500 ASN B 62 -168.99 -106.71 REMARK 500 ASP B 106 70.53 -155.85 REMARK 500 SER B 129 32.17 -146.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 74 SG REMARK 620 2 CYS B 77 SG 112.3 REMARK 620 3 HIS B 83 NE2 104.1 102.7 REMARK 620 4 CYS B 90 SG 117.1 115.6 102.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 117 SG REMARK 620 2 CYS B 120 SG 119.2 REMARK 620 3 CYS B 128 SG 97.1 123.9 REMARK 620 4 CYS B 130 SG 107.9 95.9 112.7 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7JHE RELATED DB: PDB REMARK 900 SERIAL CRYSTALLOGRAPHY REMARK 900 RELATED ID: 6XKM RELATED DB: PDB REMARK 900 SERIAL CRYSTALLOGRAPHY REMARK 900 RELATED ID: 7JIB RELATED DB: PDB REMARK 900 RELATED ID: 6W4H RELATED DB: PDB REMARK 900 RELATED ID: 6WJT RELATED DB: PDB REMARK 900 RELATED ID: 6WQ3 RELATED DB: PDB REMARK 900 RELATED ID: 6WKQ RELATED DB: PDB REMARK 900 RELATED ID: 6WVN RELATED DB: PDB REMARK 900 RELATED ID: 6WRZ RELATED DB: PDB DBREF 7JPE A 1 298 UNP P0DTD1 R1AB_SARS2 6799 7096 DBREF 7JPE B 1 139 UNP P0DTD1 R1AB_SARS2 4254 4392 SEQADV 7JPE SER A -2 UNP P0DTD1 EXPRESSION TAG SEQADV 7JPE ASN A -1 UNP P0DTD1 EXPRESSION TAG SEQADV 7JPE ALA A 0 UNP P0DTD1 EXPRESSION TAG SEQADV 7JPE SER B -2 UNP P0DTD1 EXPRESSION TAG SEQADV 7JPE ASN B -1 UNP P0DTD1 EXPRESSION TAG SEQADV 7JPE ALA B 0 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 301 SER ASN ALA SER SER GLN ALA TRP GLN PRO GLY VAL ALA SEQRES 2 A 301 MET PRO ASN LEU TYR LYS MET GLN ARG MET LEU LEU GLU SEQRES 3 A 301 LYS CYS ASP LEU GLN ASN TYR GLY ASP SER ALA THR LEU SEQRES 4 A 301 PRO LYS GLY ILE MET MET ASN VAL ALA LYS TYR THR GLN SEQRES 5 A 301 LEU CYS GLN TYR LEU ASN THR LEU THR LEU ALA VAL PRO SEQRES 6 A 301 TYR ASN MET ARG VAL ILE HIS PHE GLY ALA GLY SER ASP SEQRES 7 A 301 LYS GLY VAL ALA PRO GLY THR ALA VAL LEU ARG GLN TRP SEQRES 8 A 301 LEU PRO THR GLY THR LEU LEU VAL ASP SER ASP LEU ASN SEQRES 9 A 301 ASP PHE VAL SER ASP ALA ASP SER THR LEU ILE GLY ASP SEQRES 10 A 301 CYS ALA THR VAL HIS THR ALA ASN LYS TRP ASP LEU ILE SEQRES 11 A 301 ILE SER ASP MET TYR ASP PRO LYS THR LYS ASN VAL THR SEQRES 12 A 301 LYS GLU ASN ASP SER LYS GLU GLY PHE PHE THR TYR ILE SEQRES 13 A 301 CYS GLY PHE ILE GLN GLN LYS LEU ALA LEU GLY GLY SER SEQRES 14 A 301 VAL ALA ILE LYS ILE THR GLU HIS SER TRP ASN ALA ASP SEQRES 15 A 301 LEU TYR LYS LEU MET GLY HIS PHE ALA TRP TRP THR ALA SEQRES 16 A 301 PHE VAL THR ASN VAL ASN ALA SER SER SER GLU ALA PHE SEQRES 17 A 301 LEU ILE GLY CYS ASN TYR LEU GLY LYS PRO ARG GLU GLN SEQRES 18 A 301 ILE ASP GLY TYR VAL MET HIS ALA ASN TYR ILE PHE TRP SEQRES 19 A 301 ARG ASN THR ASN PRO ILE GLN LEU SER SER TYR SER LEU SEQRES 20 A 301 PHE ASP MET SER LYS PHE PRO LEU LYS LEU ARG GLY THR SEQRES 21 A 301 ALA VAL MET SER LEU LYS GLU GLY GLN ILE ASN ASP MET SEQRES 22 A 301 ILE LEU SER LEU LEU SER LYS GLY ARG LEU ILE ILE ARG SEQRES 23 A 301 GLU ASN ASN ARG VAL VAL ILE SER SER ASP VAL LEU VAL SEQRES 24 A 301 ASN ASN SEQRES 1 B 142 SER ASN ALA ALA GLY ASN ALA THR GLU VAL PRO ALA ASN SEQRES 2 B 142 SER THR VAL LEU SER PHE CYS ALA PHE ALA VAL ASP ALA SEQRES 3 B 142 ALA LYS ALA TYR LYS ASP TYR LEU ALA SER GLY GLY GLN SEQRES 4 B 142 PRO ILE THR ASN CYS VAL LYS MET LEU CYS THR HIS THR SEQRES 5 B 142 GLY THR GLY GLN ALA ILE THR VAL THR PRO GLU ALA ASN SEQRES 6 B 142 MET ASP GLN GLU SER PHE GLY GLY ALA SER CYS CYS LEU SEQRES 7 B 142 TYR CYS ARG CYS HIS ILE ASP HIS PRO ASN PRO LYS GLY SEQRES 8 B 142 PHE CYS ASP LEU LYS GLY LYS TYR VAL GLN ILE PRO THR SEQRES 9 B 142 THR CYS ALA ASN ASP PRO VAL GLY PHE THR LEU LYS ASN SEQRES 10 B 142 THR VAL CYS THR VAL CYS GLY MET TRP LYS GLY TYR GLY SEQRES 11 B 142 CYS SER CYS ASP GLN LEU ARG GLU PRO MET LEU GLN HET GTA A 301 51 HET SAM A 302 27 HET M7G A 303 29 HET ZN B 201 1 HET ZN B 202 1 HETNAM GTA P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM M7G 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION HETSYN GTA 7-METHYL-GPPPA FORMUL 3 GTA C21 H30 N10 O17 P3 1+ FORMUL 4 SAM C15 H22 N6 O5 S FORMUL 5 M7G C11 H18 N5 O11 P2 1+ FORMUL 6 ZN 2(ZN 2+) FORMUL 8 HOH *127(H2 O) HELIX 1 AA1 SER A 1 GLN A 6 5 6 HELIX 2 AA2 PRO A 12 MET A 17 1 6 HELIX 3 AA3 MET A 41 ASN A 55 1 15 HELIX 4 AA4 ALA A 79 LEU A 89 1 11 HELIX 5 AA5 ASP A 114 ALA A 116 5 3 HELIX 6 AA6 ASP A 133 ASN A 138 5 6 HELIX 7 AA7 GLY A 148 LYS A 160 1 13 HELIX 8 AA8 ASN A 177 GLY A 185 1 9 HELIX 9 AA9 VAL A 197 ALA A 199 5 3 HELIX 10 AB1 ASP A 220 ASN A 235 1 16 HELIX 11 AB2 SER A 241 ASP A 246 5 6 HELIX 12 AB3 ASN A 268 SER A 276 1 9 HELIX 13 AB4 ASP B 22 SER B 33 1 12 HELIX 14 AB5 GLY B 70 CYS B 74 1 5 HELIX 15 AB6 CYS B 74 HIS B 80 1 7 HELIX 16 AB7 THR B 102 ALA B 104 5 3 HELIX 17 AB8 ASP B 106 ASN B 114 1 9 SHEET 1 AA1 8 GLY A 8 ALA A 10 0 SHEET 2 AA1 8 PHE A 187 THR A 195 -1 O VAL A 194 N VAL A 9 SHEET 3 AA1 8 ALA A 204 TYR A 211 -1 O ILE A 207 N THR A 191 SHEET 4 AA1 8 LEU A 161 ILE A 171 -1 N ILE A 169 O LEU A 206 SHEET 5 AA1 8 TRP A 124 SER A 129 1 N TRP A 124 O ALA A 162 SHEET 6 AA1 8 ARG A 66 PHE A 70 1 N PHE A 70 O ILE A 128 SHEET 7 AA1 8 LEU A 94 ASP A 99 1 O VAL A 96 N HIS A 69 SHEET 8 AA1 8 SER A 109 ILE A 112 1 O SER A 109 N ASP A 97 SHEET 1 AA2 2 VAL A 118 THR A 120 0 SHEET 2 AA2 2 ILE A 290 SER A 292 -1 O SER A 291 N HIS A 119 SHEET 1 AA3 2 ALA A 258 MET A 260 0 SHEET 2 AA3 2 LEU A 280 ILE A 282 1 O ILE A 281 N MET A 260 SHEET 1 AA4 3 ILE B 55 THR B 56 0 SHEET 2 AA4 3 TYR B 96 PRO B 100 -1 O TYR B 96 N THR B 56 SHEET 3 AA4 3 GLN B 65 GLY B 69 -1 N GLU B 66 O ILE B 99 LINK SG CYS B 74 ZN ZN B 201 1555 1555 2.19 LINK SG CYS B 77 ZN ZN B 201 1555 1555 2.38 LINK NE2 HIS B 83 ZN ZN B 201 1555 1555 2.16 LINK SG CYS B 90 ZN ZN B 201 1555 1555 2.15 LINK SG CYS B 117 ZN ZN B 202 1555 1555 2.34 LINK SG CYS B 120 ZN ZN B 202 1555 1555 2.16 LINK SG CYS B 128 ZN ZN B 202 1555 1555 2.49 LINK SG CYS B 130 ZN ZN B 202 1555 1555 2.52 CRYST1 170.930 170.930 52.786 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005850 0.003378 0.000000 0.00000 SCALE2 0.000000 0.006755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018944 0.00000