HEADER VIRAL PROTEIN 08-AUG-20 7JPH TITLE CRYSTAL STRUCTURE OF EBOV GLYCOPROTEIN WITH MODIFIED HR1C AND HR2 TITLE 2 STALK AT 3.2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: GP1,2,GP; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EBOLA VIRUS - MAYINGA, ZAIRE, 1976; SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 128952; SOURCE 5 GENE: GP; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: EBOLA VIRUS - MAYINGA, ZAIRE, 1976; SOURCE 11 ORGANISM_COMMON: ZEBOV; SOURCE 12 ORGANISM_TAXID: 128952; SOURCE 13 GENE: GP; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS EBOLA GLYCOPROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAUDHARY,R.L.STANFIELD,I.A.WILSON,J.ZHU REVDAT 4 18-OCT-23 7JPH 1 REMARK REVDAT 3 04-AUG-21 7JPH 1 JRNL REVDAT 2 21-APR-21 7JPH 1 REMARK REVDAT 1 07-APR-21 7JPH 0 JRNL AUTH L.HE,A.CHAUDHARY,X.LIN,C.SOU,T.ALKUTKAR,S.KUMAR,T.NGO, JRNL AUTH 2 E.KOSVINER,G.OZOROWSKI,R.L.STANFIELD,A.B.WARD,I.A.WILSON, JRNL AUTH 3 J.ZHU JRNL TITL SINGLE-COMPONENT MULTILAYERED SELF-ASSEMBLING NANOPARTICLES JRNL TITL 2 PRESENTING RATIONALLY DESIGNED GLYCOPROTEIN TRIMERS AS EBOLA JRNL TITL 3 VIRUS VACCINES. JRNL REF NAT COMMUN V. 12 2633 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33976149 JRNL DOI 10.1038/S41467-021-22867-W REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 17082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 837 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1084 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3123 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 133 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13100 REMARK 3 B22 (A**2) : -1.13100 REMARK 3 B33 (A**2) : 3.66800 REMARK 3 B12 (A**2) : -0.56500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.911 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.471 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.507 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.246 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.870 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.840 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3344 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2981 ; 0.013 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4564 ; 1.799 ; 1.705 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6939 ; 1.589 ; 1.624 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 8.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;37.871 ;22.619 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;18.699 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.346 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3647 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 702 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 634 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 85 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1581 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 54 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1586 ; 7.777 ; 9.914 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1585 ; 7.766 ; 9.904 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1972 ;12.408 ;14.836 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1973 ;12.407 ;14.847 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1758 ; 7.849 ;10.489 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1758 ; 7.849 ;10.489 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2592 ;12.702 ;15.579 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2593 ;12.700 ;15.580 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7JPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251131. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17343 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.195 REMARK 200 RESOLUTION RANGE LOW (A) : 49.439 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5JQ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 10% PEG W/V REMARK 280 6000, PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 39460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 57.03050 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -98.77972 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 114.06100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 198 REMARK 465 LEU A 199 REMARK 465 ARG A 200 REMARK 465 GLU A 201 REMARK 465 PRO A 202 REMARK 465 VAL A 203 REMARK 465 ASN A 204 REMARK 465 ALA A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 ASP A 208 REMARK 465 PRO A 209 REMARK 465 ILE A 285 REMARK 465 GLY A 286 REMARK 465 LYS A 294 REMARK 465 LYS A 295 REMARK 465 ASN A 296 REMARK 465 LEU A 297 REMARK 465 THR A 298 REMARK 465 ARG A 299 REMARK 465 LYS A 300 REMARK 465 ILE A 301 REMARK 465 ALA B 638 REMARK 465 SER B 639 REMARK 465 GLY B 640 REMARK 465 TYR B 641 REMARK 465 ILE B 642 REMARK 465 PRO B 643 REMARK 465 GLU B 644 REMARK 465 ALA B 645 REMARK 465 PRO B 646 REMARK 465 ARG B 647 REMARK 465 ASP B 648 REMARK 465 GLY B 649 REMARK 465 GLN B 650 REMARK 465 ALA B 651 REMARK 465 TYR B 652 REMARK 465 VAL B 653 REMARK 465 ARG B 654 REMARK 465 LYS B 655 REMARK 465 ASP B 656 REMARK 465 GLY B 657 REMARK 465 GLU B 658 REMARK 465 TRP B 659 REMARK 465 VAL B 660 REMARK 465 LEU B 661 REMARK 465 LEU B 662 REMARK 465 SER B 663 REMARK 465 THR B 664 REMARK 465 PHE B 665 REMARK 465 LEU B 666 REMARK 465 GLY B 667 REMARK 465 SER B 668 REMARK 465 HIS B 669 REMARK 465 HIS B 670 REMARK 465 HIS B 671 REMARK 465 HIS B 672 REMARK 465 HIS B 673 REMARK 465 HIS B 674 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C4 NAG E 1 C1 NAG E 2 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 50 54.48 -156.27 REMARK 500 ASP A 55 141.71 -37.62 REMARK 500 TYR A 162 -160.38 -113.07 REMARK 500 PHE A 194 -54.40 69.73 REMARK 500 THR A 269 -168.56 -71.54 REMARK 500 PRO A 279 41.18 -78.99 REMARK 500 THR A 283 -35.56 -131.63 REMARK 500 UNK A 472 64.83 -118.90 REMARK 500 UNK A 473 69.13 -68.24 REMARK 500 UNK A 474 -158.68 -70.95 REMARK 500 GLU B 523 -66.28 -24.84 REMARK 500 ILE B 619 -31.88 -130.58 REMARK 500 ASP B 629 -47.11 -145.90 REMARK 500 ASP B 632 46.82 -83.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE COMPLETE SEQUENCE OF CHAIN A IS REMARK 999 IPLGVIHNSALQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSG REMARK 999 VPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGD REMARK 999 FAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDP REMARK 999 SSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSN REMARK 999 TTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVSTHHQDTGEESASSGK REMARK 999 LGLITNTIAGVAGLITGGRRTRR DBREF 7JPH A 33 476 PDB 7JPH 7JPH 33 476 DBREF 7JPH B 502 637 UNP Q05320 VGP_EBOZM 502 637 SEQADV 7JPH PRO B 577 UNP Q05320 THR 577 ENGINEERED MUTATION SEQADV 7JPH LEU B 615 UNP Q05320 TRP 615 ENGINEERED MUTATION SEQADV 7JPH ALA B 638 UNP Q05320 EXPRESSION TAG SEQADV 7JPH SER B 639 UNP Q05320 EXPRESSION TAG SEQADV 7JPH GLY B 640 UNP Q05320 EXPRESSION TAG SEQADV 7JPH TYR B 641 UNP Q05320 EXPRESSION TAG SEQADV 7JPH ILE B 642 UNP Q05320 EXPRESSION TAG SEQADV 7JPH PRO B 643 UNP Q05320 EXPRESSION TAG SEQADV 7JPH GLU B 644 UNP Q05320 EXPRESSION TAG SEQADV 7JPH ALA B 645 UNP Q05320 EXPRESSION TAG SEQADV 7JPH PRO B 646 UNP Q05320 EXPRESSION TAG SEQADV 7JPH ARG B 647 UNP Q05320 EXPRESSION TAG SEQADV 7JPH ASP B 648 UNP Q05320 EXPRESSION TAG SEQADV 7JPH GLY B 649 UNP Q05320 EXPRESSION TAG SEQADV 7JPH GLN B 650 UNP Q05320 EXPRESSION TAG SEQADV 7JPH ALA B 651 UNP Q05320 EXPRESSION TAG SEQADV 7JPH TYR B 652 UNP Q05320 EXPRESSION TAG SEQADV 7JPH VAL B 653 UNP Q05320 EXPRESSION TAG SEQADV 7JPH ARG B 654 UNP Q05320 EXPRESSION TAG SEQADV 7JPH LYS B 655 UNP Q05320 EXPRESSION TAG SEQADV 7JPH ASP B 656 UNP Q05320 EXPRESSION TAG SEQADV 7JPH GLY B 657 UNP Q05320 EXPRESSION TAG SEQADV 7JPH GLU B 658 UNP Q05320 EXPRESSION TAG SEQADV 7JPH TRP B 659 UNP Q05320 EXPRESSION TAG SEQADV 7JPH VAL B 660 UNP Q05320 EXPRESSION TAG SEQADV 7JPH LEU B 661 UNP Q05320 EXPRESSION TAG SEQADV 7JPH LEU B 662 UNP Q05320 EXPRESSION TAG SEQADV 7JPH SER B 663 UNP Q05320 EXPRESSION TAG SEQADV 7JPH THR B 664 UNP Q05320 EXPRESSION TAG SEQADV 7JPH PHE B 665 UNP Q05320 EXPRESSION TAG SEQADV 7JPH LEU B 666 UNP Q05320 EXPRESSION TAG SEQADV 7JPH GLY B 667 UNP Q05320 EXPRESSION TAG SEQADV 7JPH SER B 668 UNP Q05320 EXPRESSION TAG SEQADV 7JPH HIS B 669 UNP Q05320 EXPRESSION TAG SEQADV 7JPH HIS B 670 UNP Q05320 EXPRESSION TAG SEQADV 7JPH HIS B 671 UNP Q05320 EXPRESSION TAG SEQADV 7JPH HIS B 672 UNP Q05320 EXPRESSION TAG SEQADV 7JPH HIS B 673 UNP Q05320 EXPRESSION TAG SEQADV 7JPH HIS B 674 UNP Q05320 EXPRESSION TAG SEQRES 1 A 284 ILE PRO LEU GLY VAL ILE HIS ASN SER ALA LEU GLN VAL SEQRES 2 A 284 SER ASP VAL ASP LYS LEU VAL CYS ARG ASP LYS LEU SER SEQRES 3 A 284 SER THR ASN GLN LEU ARG SER VAL GLY LEU ASN LEU GLU SEQRES 4 A 284 GLY ASN GLY VAL ALA THR ASP VAL PRO SER ALA THR LYS SEQRES 5 A 284 ARG TRP GLY PHE ARG SER GLY VAL PRO PRO LYS VAL VAL SEQRES 6 A 284 ASN TYR GLU ALA GLY GLU TRP ALA GLU ASN CYS TYR ASN SEQRES 7 A 284 LEU GLU ILE LYS LYS PRO ASP GLY SER GLU CYS LEU PRO SEQRES 8 A 284 ALA ALA PRO ASP GLY ILE ARG GLY PHE PRO ARG CYS ARG SEQRES 9 A 284 TYR VAL HIS LYS VAL SER GLY THR GLY PRO CYS ALA GLY SEQRES 10 A 284 ASP PHE ALA PHE HIS LYS GLU GLY ALA PHE PHE LEU TYR SEQRES 11 A 284 ASP ARG LEU ALA SER THR VAL ILE TYR ARG GLY THR THR SEQRES 12 A 284 PHE ALA GLU GLY VAL VAL ALA PHE LEU ILE LEU PRO GLN SEQRES 13 A 284 ALA LYS LYS ASP PHE PHE SER SER HIS PRO LEU ARG GLU SEQRES 14 A 284 PRO VAL ASN ALA THR GLU ASP PRO SER SER GLY TYR TYR SEQRES 15 A 284 SER THR THR ILE ARG TYR GLN ALA THR GLY PHE GLY THR SEQRES 16 A 284 ASN GLU THR GLU TYR LEU PHE GLU VAL ASP ASN LEU THR SEQRES 17 A 284 TYR VAL GLN LEU GLU SER ARG PHE THR PRO GLN PHE LEU SEQRES 18 A 284 LEU GLN LEU ASN GLU THR ILE TYR THR SER GLY LYS ARG SEQRES 19 A 284 SER ASN THR THR GLY LYS LEU ILE TRP LYS VAL ASN PRO SEQRES 20 A 284 GLU ILE ASP THR THR ILE GLY GLU TRP ALA PHE TRP GLU SEQRES 21 A 284 THR LYS LYS ASN LEU THR ARG LYS ILE ARG SER GLU GLU SEQRES 22 A 284 LEU SER PHE THR VAL UNK UNK UNK UNK UNK UNK SEQRES 1 B 173 GLU ALA ILE VAL ASN ALA GLN PRO LYS CYS ASN PRO ASN SEQRES 2 B 173 LEU HIS TYR TRP THR THR GLN ASP GLU GLY ALA ALA ILE SEQRES 3 B 173 GLY LEU ALA TRP ILE PRO TYR PHE GLY PRO ALA ALA GLU SEQRES 4 B 173 GLY ILE TYR ILE GLU GLY LEU MET HIS ASN GLN ASP GLY SEQRES 5 B 173 LEU ILE CYS GLY LEU ARG GLN LEU ALA ASN GLU THR THR SEQRES 6 B 173 GLN ALA LEU GLN LEU PHE LEU ARG ALA THR PRO GLU LEU SEQRES 7 B 173 ARG THR PHE SER ILE LEU ASN ARG LYS ALA ILE ASP PHE SEQRES 8 B 173 LEU LEU GLN ARG TRP GLY GLY THR CYS HIS ILE LEU GLY SEQRES 9 B 173 PRO ASP CYS CYS ILE GLU PRO HIS ASP LEU THR LYS ASN SEQRES 10 B 173 ILE THR ASP LYS ILE ASP GLN ILE ILE HIS ASP PHE VAL SEQRES 11 B 173 ASP LYS THR LEU PRO ASP ALA SER GLY TYR ILE PRO GLU SEQRES 12 B 173 ALA PRO ARG ASP GLY GLN ALA TYR VAL ARG LYS ASP GLY SEQRES 13 B 173 GLU TRP VAL LEU LEU SER THR PHE LEU GLY SER HIS HIS SEQRES 14 B 173 HIS HIS HIS HIS HET NAG E 1 14 HET NAG E 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET NAG A 501 14 HET NAG B 701 14 HET PO4 B 702 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PO4 PHOSPHATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 3(C6 H12 O6) FORMUL 7 PO4 O4 P 3- HELIX 1 AA1 ASP A 47 LEU A 51 5 5 HELIX 2 AA2 SER A 59 ASN A 61 5 3 HELIX 3 AA3 GLU A 71 GLY A 74 5 4 HELIX 4 AA4 ASP A 78 LYS A 84 1 7 HELIX 5 AA5 THR A 249 SER A 263 1 15 HELIX 6 AA6 ALA B 538 GLY B 541 5 4 HELIX 7 AA7 ASN B 550 ASP B 552 5 3 HELIX 8 AA8 GLY B 553 THR B 576 1 24 HELIX 9 AA9 SER B 583 GLY B 598 1 16 HELIX 10 AB1 PRO B 612 ASP B 624 1 13 SHEET 1 AA1 5 ALA A 42 SER A 46 0 SHEET 2 AA1 5 LEU A 35 HIS A 39 -1 N LEU A 35 O SER A 46 SHEET 3 AA1 5 ALA A 177 ILE A 185 1 O ILE A 185 N GLY A 36 SHEET 4 AA1 5 LEU A 63 ASN A 69 -1 N ARG A 64 O LEU A 184 SHEET 5 AA1 5 ALA A 101 GLY A 102 1 O ALA A 101 N GLY A 67 SHEET 1 AA2 7 ALA A 42 SER A 46 0 SHEET 2 AA2 7 LEU A 35 HIS A 39 -1 N LEU A 35 O SER A 46 SHEET 3 AA2 7 ALA A 177 ILE A 185 1 O ILE A 185 N GLY A 36 SHEET 4 AA2 7 PHE A 159 LEU A 161 -1 N LEU A 161 O ALA A 177 SHEET 5 AA2 7 LEU A 165 SER A 167 -1 O SER A 167 N PHE A 160 SHEET 6 AA2 7 VAL A 96 ASN A 98 -1 N VAL A 97 O ALA A 166 SHEET 7 AA2 7 ARG B 580 THR B 581 1 O THR B 581 N VAL A 96 SHEET 1 AA3 2 TRP A 86 ARG A 89 0 SHEET 2 AA3 2 PHE A 151 HIS A 154 -1 O PHE A 153 N GLY A 87 SHEET 1 AA4 6 ALA A 105 LYS A 114 0 SHEET 2 AA4 6 CYS A 135 THR A 144 1 O TYR A 137 N CYS A 108 SHEET 3 AA4 6 ILE A 218 THR A 223 1 O ILE A 218 N VAL A 138 SHEET 4 AA4 6 GLU A 231 GLU A 235 -1 O LEU A 233 N GLN A 221 SHEET 5 AA4 6 THR A 240 GLN A 243 -1 O VAL A 242 N PHE A 234 SHEET 6 AA4 6 LEU A 273 TRP A 275 1 O TRP A 275 N TYR A 241 SHEET 1 AA5 2 LEU B 515 THR B 520 0 SHEET 2 AA5 2 TYR B 543 MET B 548 -1 O MET B 548 N LEU B 515 SSBOND 1 CYS A 53 CYS B 609 1555 1555 2.07 SSBOND 2 CYS A 108 CYS A 135 1555 1555 2.04 SSBOND 3 CYS A 121 CYS A 147 1555 1555 2.03 SSBOND 4 CYS B 511 CYS B 556 1555 1555 2.10 SSBOND 5 CYS B 601 CYS B 608 1555 1555 2.08 LINK ND2 ASN A 238 C1 NAG A 501 1555 1555 1.45 LINK ND2 ASN A 257 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 563 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 618 C1 NAG B 701 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.48 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.46 LINK O3 BMA C 3 C1 MAN C 6 1555 1555 1.46 LINK O3 MAN C 4 C1 MAN C 5 1555 1555 1.47 CRYST1 114.061 114.061 136.216 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008767 0.005062 0.000000 0.00000 SCALE2 0.000000 0.010124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007341 0.00000