HEADER LYASE 08-AUG-20 7JPJ TITLE CRYSTAL STRUCTURE OF THE ESSENTIAL DIMERIC LYSA FROM PHAEODACTYLUM TITLE 2 TRICORNUTUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIAMINOPIMELATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHAEODACTYLUM TRICORNUTUM; SOURCE 3 ORGANISM_TAXID: 556484; SOURCE 4 STRAIN: CCAP 1055/1; SOURCE 5 GENE: PHATRDRAFT_21592; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PLP BINDING ENZYME, DECARBOXYLASE, LYSINE BIOSYNTHESIS, D-LYSINE, KEYWDS 2 OBLIGATE DIMER, BIOSYNTHETIC PROTEIN, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.FEDOROV,V.A.BELINSKI,J.K.BRUNSON,S.C.ALMO,C.L.DUPONT,A.GHOSH REVDAT 2 18-OCT-23 7JPJ 1 JRNL REVDAT 1 16-JUN-21 7JPJ 0 JRNL AUTH V.A.BIELINSKI,J.K.BRUNSON,A.GHOSH,M.A.MOOSBURNER,E.A.GARZA, JRNL AUTH 2 Z.FUSSY,J.BAI,S.M.K.MCKINNIE,B.S.MOORE,A.E.ALLEN,S.C.ALMO, JRNL AUTH 3 C.L.DUPONT JRNL TITL THE PHAEODACTYLUM TRICORNUTUM DIAMINOPIMELATE DECARBOXYLASE JRNL TITL 2 WAS ACQUIRED VIA HORIZONTAL GENE TRANSFER FROM BACTERIA AND JRNL TITL 3 DISPLAYS SUBSTRATE PROMISCUITY JRNL REF BIORXIV 2020 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2020.10.01.322594 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3940 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.380 REMARK 3 FREE R VALUE TEST SET COUNT : 1307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.9900 - 5.7300 1.00 2677 179 0.1695 0.1815 REMARK 3 2 5.7200 - 4.5700 1.00 2619 143 0.1714 0.2180 REMARK 3 3 4.5600 - 3.9900 1.00 2583 140 0.1601 0.2150 REMARK 3 4 3.9900 - 3.6300 1.00 2562 146 0.1872 0.2382 REMARK 3 5 3.6300 - 3.3700 1.00 2574 115 0.2002 0.2558 REMARK 3 6 3.3700 - 3.1800 1.00 2550 140 0.2201 0.2847 REMARK 3 7 3.1800 - 3.0200 1.00 2524 148 0.2445 0.2775 REMARK 3 8 3.0200 - 2.8900 1.00 2489 155 0.2566 0.3163 REMARK 3 9 2.8900 - 2.7800 0.96 2414 141 0.2579 0.3128 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6631 REMARK 3 ANGLE : 0.540 8987 REMARK 3 CHIRALITY : 0.043 1009 REMARK 3 PLANARITY : 0.004 1175 REMARK 3 DIHEDRAL : 4.851 922 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 39:83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.407 43.211 24.448 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.1241 REMARK 3 T33: 0.1974 T12: 0.0545 REMARK 3 T13: -0.0273 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.9269 L22: 0.8861 REMARK 3 L33: 0.5807 L12: -0.8577 REMARK 3 L13: 0.0033 L23: -0.3159 REMARK 3 S TENSOR REMARK 3 S11: 0.2891 S12: 0.0911 S13: 0.0020 REMARK 3 S21: -0.2151 S22: -0.2210 S23: 0.0341 REMARK 3 S31: 0.2395 S32: 0.1294 S33: 0.0151 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 84:107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.245 57.551 28.278 REMARK 3 T TENSOR REMARK 3 T11: 0.1811 T22: 0.0813 REMARK 3 T33: 0.1415 T12: 0.0353 REMARK 3 T13: 0.0222 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 2.3352 L22: 1.4191 REMARK 3 L33: 2.1836 L12: 0.2201 REMARK 3 L13: 0.8120 L23: -0.7376 REMARK 3 S TENSOR REMARK 3 S11: 0.1341 S12: 0.2992 S13: 0.2541 REMARK 3 S21: -0.2152 S22: -0.3054 S23: -0.0863 REMARK 3 S31: 0.1579 S32: 0.2706 S33: 0.2206 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 108:150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.511 64.160 38.282 REMARK 3 T TENSOR REMARK 3 T11: 0.2709 T22: 0.1122 REMARK 3 T33: 0.2418 T12: 0.0062 REMARK 3 T13: -0.0152 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5841 L22: 0.4107 REMARK 3 L33: 1.5216 L12: 0.4125 REMARK 3 L13: 0.1310 L23: -0.1784 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: 0.0413 S13: 0.1707 REMARK 3 S21: 0.0870 S22: -0.1683 S23: -0.0952 REMARK 3 S31: -0.4425 S32: -0.2557 S33: 0.1293 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 151:199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.055 59.883 41.969 REMARK 3 T TENSOR REMARK 3 T11: 0.2600 T22: 0.2462 REMARK 3 T33: 0.2568 T12: 0.1429 REMARK 3 T13: -0.0370 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 2.8804 L22: 2.0102 REMARK 3 L33: 3.9145 L12: -1.1247 REMARK 3 L13: -0.2721 L23: -0.6218 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: -0.1307 S13: -0.2867 REMARK 3 S21: -0.1580 S22: -0.0852 S23: 0.5037 REMARK 3 S31: 0.1719 S32: -0.5625 S33: 0.1179 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 200:278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.134 57.095 35.325 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.2021 REMARK 3 T33: 0.2484 T12: 0.0133 REMARK 3 T13: -0.0074 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.1634 L22: 1.5151 REMARK 3 L33: 2.2597 L12: -1.4333 REMARK 3 L13: -0.6201 L23: -0.4042 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: 0.0247 S13: -0.1246 REMARK 3 S21: 0.0253 S22: -0.0222 S23: 0.3793 REMARK 3 S31: 0.0136 S32: -0.4003 S33: 0.0304 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 279:369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.514 40.948 30.764 REMARK 3 T TENSOR REMARK 3 T11: 0.1333 T22: 0.1040 REMARK 3 T33: 0.2102 T12: -0.0093 REMARK 3 T13: 0.0214 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 2.1154 L22: 2.3436 REMARK 3 L33: 1.2325 L12: -1.9663 REMARK 3 L13: 0.8228 L23: -1.1362 REMARK 3 S TENSOR REMARK 3 S11: 0.1714 S12: 0.0552 S13: -0.0791 REMARK 3 S21: -0.2232 S22: -0.0944 S23: 0.1277 REMARK 3 S31: 0.1240 S32: 0.0167 S33: -0.0767 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 370:439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.341 31.073 35.978 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.1646 REMARK 3 T33: 0.1697 T12: -0.0051 REMARK 3 T13: -0.0262 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.9590 L22: 2.1830 REMARK 3 L33: 1.8887 L12: -0.0478 REMARK 3 L13: -0.2068 L23: -0.6505 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: 0.0637 S13: -0.0505 REMARK 3 S21: -0.0802 S22: -0.0466 S23: 0.1379 REMARK 3 S31: 0.2375 S32: -0.0578 S33: 0.0345 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 39:106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.681 43.901 69.180 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.1657 REMARK 3 T33: 0.1846 T12: 0.0230 REMARK 3 T13: -0.0054 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.9065 L22: 1.3554 REMARK 3 L33: 0.8748 L12: -0.8065 REMARK 3 L13: 0.5053 L23: -0.7369 REMARK 3 S TENSOR REMARK 3 S11: -0.1452 S12: -0.2209 S13: -0.0682 REMARK 3 S21: 0.2066 S22: 0.1398 S23: 0.0783 REMARK 3 S31: -0.1653 S32: -0.0525 S33: 0.0307 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 107:151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.725 36.626 57.872 REMARK 3 T TENSOR REMARK 3 T11: 0.1245 T22: 0.1954 REMARK 3 T33: 0.1784 T12: -0.0298 REMARK 3 T13: 0.0197 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.8892 L22: 2.3058 REMARK 3 L33: 1.7986 L12: -0.8528 REMARK 3 L13: 0.2188 L23: 0.2268 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: -0.1038 S13: 0.1545 REMARK 3 S21: -0.0310 S22: -0.1126 S23: -0.3197 REMARK 3 S31: -0.1094 S32: 0.3054 S33: 0.0397 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 152:158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.736 27.917 56.519 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.0354 REMARK 3 T33: 0.3230 T12: -0.1453 REMARK 3 T13: -0.0557 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.5875 L22: 2.0629 REMARK 3 L33: 1.3727 L12: 0.6174 REMARK 3 L13: -0.0411 L23: 0.7297 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: 0.0281 S13: -0.1245 REMARK 3 S21: -0.0330 S22: 0.0699 S23: 0.5612 REMARK 3 S31: 0.3208 S32: -0.2241 S33: 0.1322 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 159:164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.712 21.885 46.586 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.1548 REMARK 3 T33: 0.2788 T12: 0.0357 REMARK 3 T13: 0.0693 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.6753 L22: 8.9433 REMARK 3 L33: 2.6630 L12: 3.4916 REMARK 3 L13: 1.4499 L23: -0.9769 REMARK 3 S TENSOR REMARK 3 S11: -0.2617 S12: -0.1793 S13: 0.1526 REMARK 3 S21: -0.6187 S22: 0.3129 S23: -0.2754 REMARK 3 S31: 0.0942 S32: 0.2997 S33: 0.1676 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 165:330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.409 21.365 60.885 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.1221 REMARK 3 T33: 0.2391 T12: -0.0074 REMARK 3 T13: -0.0353 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.1372 L22: 0.9901 REMARK 3 L33: 0.7396 L12: -0.6916 REMARK 3 L13: 0.1480 L23: -0.6431 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: 0.0025 S13: -0.2152 REMARK 3 S21: 0.0499 S22: -0.0451 S23: 0.0441 REMARK 3 S31: 0.3087 S32: 0.0005 S33: 0.0053 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN B AND RESID 331:369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.460 47.691 54.208 REMARK 3 T TENSOR REMARK 3 T11: 0.1894 T22: 0.2398 REMARK 3 T33: 0.1632 T12: 0.0550 REMARK 3 T13: -0.0047 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 2.1345 L22: 2.4973 REMARK 3 L33: 1.3761 L12: -1.7084 REMARK 3 L13: 0.1570 L23: -0.6345 REMARK 3 S TENSOR REMARK 3 S11: 0.1518 S12: 0.1846 S13: -0.0642 REMARK 3 S21: -0.0361 S22: 0.0960 S23: 0.1120 REMARK 3 S31: 0.1089 S32: -0.3551 S33: -0.2020 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN B AND RESID 370:439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.631 48.310 57.848 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.2026 REMARK 3 T33: 0.1495 T12: 0.0372 REMARK 3 T13: 0.0222 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 2.3059 L22: 2.0364 REMARK 3 L33: 1.0958 L12: -0.6972 REMARK 3 L13: 0.3289 L23: 0.4751 REMARK 3 S TENSOR REMARK 3 S11: -0.0985 S12: -0.0496 S13: -0.0044 REMARK 3 S21: 0.2385 S22: 0.0853 S23: -0.0159 REMARK 3 S31: -0.0799 S32: -0.2769 S33: 0.0462 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000248945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FAST_DP REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24364 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 19.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.27400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 0.85400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 1KNW REMARK 200 REMARK 200 REMARK: RECTANGULAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE AND 0.1 M BIS REMARK 280 -TRIS, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.89000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.59800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.16200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.59800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.16200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -131.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 GLU A 476 REMARK 465 SER B 36 REMARK 465 ALA B 37 REMARK 465 THR B 38 REMARK 465 PHE B 190 REMARK 465 SER B 191 REMARK 465 ALA B 192 REMARK 465 SER B 193 REMARK 465 THR B 194 REMARK 465 THR B 195 REMARK 465 GLY B 196 REMARK 465 PHE B 197 REMARK 465 GLU B 476 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 46 16.22 -146.04 REMARK 500 CYS A 97 103.33 -167.56 REMARK 500 LYS A 173 -33.47 -131.27 REMARK 500 PHE A 190 44.94 -99.80 REMARK 500 SER A 193 -115.59 -175.37 REMARK 500 HIS A 238 75.30 -161.65 REMARK 500 ASP A 380 30.99 -145.35 REMARK 500 CYS A 431 -72.03 -122.16 REMARK 500 MET A 434 84.13 -156.34 REMARK 500 ARG A 460 113.00 -160.04 REMARK 500 PHE B 46 15.44 -144.69 REMARK 500 CYS B 97 100.41 -168.24 REMARK 500 HIS B 238 83.49 -153.80 REMARK 500 PRO B 402 107.40 -57.79 REMARK 500 CYS B 431 -75.06 -114.74 REMARK 500 MET B 434 88.97 -165.12 REMARK 500 THR B 436 51.70 -92.02 REMARK 500 ARG B 460 115.28 -162.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DLY A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 DBREF 7JPJ A 36 476 UNP B7G3A2 B7G3A2_PHATC 38 478 DBREF 7JPJ B 36 476 UNP B7G3A2 B7G3A2_PHATC 38 478 SEQRES 1 A 441 SER ALA THR THR ASN PRO LEU GLN SER ILE PHE LEU THR SEQRES 2 A 441 PRO GLU THR ALA LYS ALA CYS ILE ASP ALA ALA GLY GLY SEQRES 3 A 441 THR PRO LEU TYR ALA TYR SER ILE ASP LYS LEU GLU GLU SEQRES 4 A 441 ALA ALA ASP ALA CYS LEU ALA PHE PRO ASN ALA TYR GLY SEQRES 5 A 441 LEU THR VAL ARG TYR ALA MET LYS ALA CYS PRO ASN ALA SEQRES 6 A 441 SER ILE LEU LYS TYR PHE HIS SER LYS ASN ILE HIS VAL SEQRES 7 A 441 ASP ALA SER SER GLY PHE GLU VAL ARG ARG ALA MET ASP SEQRES 8 A 441 ALA GLY VAL PRO ALA GLU ASN ILE SER LEU SER THR GLN SEQRES 9 A 441 GLU LEU PRO GLU ASP PHE ALA ALA LEU VAL ASP MET GLY SEQRES 10 A 441 VAL LYS LEU ASN ALA CYS SER VAL SER GLN LEU GLU ARG SEQRES 11 A 441 PHE GLY GLU HIS TYR ALA GLY LYS GLY ALA LYS VAL GLY SEQRES 12 A 441 VAL ARG VAL ASN PRO GLY VAL GLY SER GLY GLY PHE SER SEQRES 13 A 441 ALA SER THR THR GLY PHE SER LYS THR ASN VAL GLY GLY SEQRES 14 A 441 PRO SER SER SER PHE GLY ILE TRP HIS GLU LEU VAL THR SEQRES 15 A 441 ASP GLY THR VAL PRO ASP ILE VAL GLU ARG TYR GLY LEU SEQRES 16 A 441 GLU VAL GLU ARG ILE HIS THR HIS ILE GLY SER GLY SER SEQRES 17 A 441 ASP PRO GLU ILE TRP GLN GLN VAL ALA THR LYS SER LEU SEQRES 18 A 441 SER PHE CYS LYS VAL PHE PRO THR VAL LYS THR MET ASN SEQRES 19 A 441 LEU GLY GLY GLY TYR LYS VAL GLY ARG ASN LYS GLY GLU SEQRES 20 A 441 VAL THR THR ASP LEU GLN LYS ILE GLY LYS PRO VAL ALA SEQRES 21 A 441 ASP ALA PHE LYS LYS PHE ALA GLU LYS GLU GLY ARG GLU SEQRES 22 A 441 LEU GLN MET GLU ILE GLU PRO GLY THR TYR LEU VAL ALA SEQRES 23 A 441 MET ALA GLY ALA LEU VAL SER LYS VAL GLN ASP LYS VAL SEQRES 24 A 441 HIS THR THR GLY GLU ASN SER HIS THR PHE LEU LYS LEU SEQRES 25 A 441 ASP ALA GLY MET THR ASP VAL LEU ARG PRO SER LEU TYR SEQRES 26 A 441 GLY ALA VAL HIS PRO ILE THR ILE LEU PRO GLY SER GLY SEQRES 27 A 441 ASN SER ALA ASP VAL GLY ASP GLU THR GLU SER VAL VAL SEQRES 28 A 441 VAL VAL GLY HIS CYS CYS GLU SER GLY ASP LEU MET THR SEQRES 29 A 441 PRO ALA PRO GLY GLU PRO GLU GLN LEU ALA GLU GLN GLU SEQRES 30 A 441 LEU ARG ALA ALA ALA VAL GLY ASP ILE LEU VAL MET ASP SEQRES 31 A 441 GLY SER GLY ALA TYR CYS SER GLY MET SER THR LYS ASN SEQRES 32 A 441 TYR ASN SER PHE PRO GLU ALA PRO GLU VAL LEU VAL ASP SEQRES 33 A 441 LYS ALA GLY LYS ALA HIS LEU ILE ARG LYS ARG GLN THR SEQRES 34 A 441 LEU SER GLN ILE TYR GLU ASN GLU ILE SER VAL GLU SEQRES 1 B 441 SER ALA THR THR ASN PRO LEU GLN SER ILE PHE LEU THR SEQRES 2 B 441 PRO GLU THR ALA LYS ALA CYS ILE ASP ALA ALA GLY GLY SEQRES 3 B 441 THR PRO LEU TYR ALA TYR SER ILE ASP LYS LEU GLU GLU SEQRES 4 B 441 ALA ALA ASP ALA CYS LEU ALA PHE PRO ASN ALA TYR GLY SEQRES 5 B 441 LEU THR VAL ARG TYR ALA MET LYS ALA CYS PRO ASN ALA SEQRES 6 B 441 SER ILE LEU LYS TYR PHE HIS SER LYS ASN ILE HIS VAL SEQRES 7 B 441 ASP ALA SER SER GLY PHE GLU VAL ARG ARG ALA MET ASP SEQRES 8 B 441 ALA GLY VAL PRO ALA GLU ASN ILE SER LEU SER THR GLN SEQRES 9 B 441 GLU LEU PRO GLU ASP PHE ALA ALA LEU VAL ASP MET GLY SEQRES 10 B 441 VAL LYS LEU ASN ALA CYS SER VAL SER GLN LEU GLU ARG SEQRES 11 B 441 PHE GLY GLU HIS TYR ALA GLY LYS GLY ALA LYS VAL GLY SEQRES 12 B 441 VAL ARG VAL ASN PRO GLY VAL GLY SER GLY GLY PHE SER SEQRES 13 B 441 ALA SER THR THR GLY PHE SER LYS THR ASN VAL GLY GLY SEQRES 14 B 441 PRO SER SER SER PHE GLY ILE TRP HIS GLU LEU VAL THR SEQRES 15 B 441 ASP GLY THR VAL PRO ASP ILE VAL GLU ARG TYR GLY LEU SEQRES 16 B 441 GLU VAL GLU ARG ILE HIS THR HIS ILE GLY SER GLY SER SEQRES 17 B 441 ASP PRO GLU ILE TRP GLN GLN VAL ALA THR LYS SER LEU SEQRES 18 B 441 SER PHE CYS LYS VAL PHE PRO THR VAL LYS THR MET ASN SEQRES 19 B 441 LEU GLY GLY GLY TYR LYS VAL GLY ARG ASN LYS GLY GLU SEQRES 20 B 441 VAL THR THR ASP LEU GLN LYS ILE GLY LYS PRO VAL ALA SEQRES 21 B 441 ASP ALA PHE LYS LYS PHE ALA GLU LYS GLU GLY ARG GLU SEQRES 22 B 441 LEU GLN MET GLU ILE GLU PRO GLY THR TYR LEU VAL ALA SEQRES 23 B 441 MET ALA GLY ALA LEU VAL SER LYS VAL GLN ASP LYS VAL SEQRES 24 B 441 HIS THR THR GLY GLU ASN SER HIS THR PHE LEU LYS LEU SEQRES 25 B 441 ASP ALA GLY MET THR ASP VAL LEU ARG PRO SER LEU TYR SEQRES 26 B 441 GLY ALA VAL HIS PRO ILE THR ILE LEU PRO GLY SER GLY SEQRES 27 B 441 ASN SER ALA ASP VAL GLY ASP GLU THR GLU SER VAL VAL SEQRES 28 B 441 VAL VAL GLY HIS CYS CYS GLU SER GLY ASP LEU MET THR SEQRES 29 B 441 PRO ALA PRO GLY GLU PRO GLU GLN LEU ALA GLU GLN GLU SEQRES 30 B 441 LEU ARG ALA ALA ALA VAL GLY ASP ILE LEU VAL MET ASP SEQRES 31 B 441 GLY SER GLY ALA TYR CYS SER GLY MET SER THR LYS ASN SEQRES 32 B 441 TYR ASN SER PHE PRO GLU ALA PRO GLU VAL LEU VAL ASP SEQRES 33 B 441 LYS ALA GLY LYS ALA HIS LEU ILE ARG LYS ARG GLN THR SEQRES 34 B 441 LEU SER GLN ILE TYR GLU ASN GLU ILE SER VAL GLU HET DLY A 501 10 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HETNAM DLY D-LYSINE HETNAM SO4 SULFATE ION FORMUL 3 DLY C6 H14 N2 O2 FORMUL 4 SO4 7(O4 S 2-) FORMUL 11 HOH *49(H2 O) HELIX 1 AA1 THR A 48 ALA A 59 1 12 HELIX 2 AA2 ILE A 69 ALA A 81 1 13 HELIX 3 AA4 ALA A 100 LYS A 109 1 10 HELIX 4 AA5 SER A 117 ALA A 127 1 11 HELIX 5 AA7 PHE A 145 MET A 151 1 7 HELIX 6 AA8 SER A 159 TYR A 170 1 12 HELIX 7 AA9 HIS A 213 ASP A 218 1 6 HELIX 8 AB1 THR A 220 TYR A 228 1 9 HELIX 9 AB2 ASP A 244 PHE A 258 1 15 HELIX 10 AB3 CYS A 259 VAL A 261 5 3 HELIX 11 AB4 LEU A 287 GLU A 305 1 19 HELIX 12 AB5 GLY A 316 ALA A 323 1 8 HELIX 13 AB6 LEU A 355 LEU A 359 1 5 HELIX 14 AB9 LEU A 465 TYR A 469 1 5 HELIX 15 AC1 PRO B 49 ALA B 58 1 10 HELIX 16 AC2 ILE B 69 ALA B 81 1 13 HELIX 17 AC4 ALA B 100 LYS B 109 1 10 HELIX 18 AC5 GLY B 118 ALA B 127 1 10 HELIX 19 AC7 PHE B 145 MET B 151 1 7 HELIX 20 AC8 VAL B 160 TYR B 170 1 11 HELIX 21 AC9 HIS B 213 THR B 217 1 5 HELIX 22 AD1 THR B 220 TYR B 228 1 9 HELIX 23 AD2 PRO B 245 LYS B 260 1 16 HELIX 24 AD3 LEU B 287 LYS B 304 1 18 HELIX 25 AD4 GLY B 316 MET B 322 1 7 HELIX 26 AD5 LEU B 355 TYR B 360 1 6 HELIX 27 AD8 THR B 464 TYR B 469 1 6 SHEET 1 AA1 6 ILE A 366 LEU A 369 0 SHEET 2 AA1 6 GLY A 419 MET A 424 -1 O VAL A 423 N THR A 367 SHEET 3 AA1 6 GLY A 324 HIS A 335 -1 N SER A 328 O LEU A 422 SHEET 4 AA1 6 THR A 343 LEU A 347 -1 O PHE A 344 N VAL A 334 SHEET 5 AA1 6 THR A 382 VAL A 388 1 O VAL A 386 N LEU A 345 SHEET 6 AA1 6 GLN A 411 ARG A 414 -1 O LEU A 413 N GLU A 383 SHEET 1 AA2 6 ILE A 366 LEU A 369 0 SHEET 2 AA2 6 ILE A 421 MET A 424 -1 O VAL A 423 N THR A 367 SHEET 3 AA2 6 GLY A 324 HIS A 335 -1 N SER A 328 O LEU A 422 SHEET 4 AA2 6 LEU A 64 SER A 68 -1 N LEU A 64 O VAL A 327 SHEET 5 AA2 6 GLU A 447 ASP A 451 1 O VAL A 450 N TYR A 67 SHEET 6 AA2 6 GLY A 454 ARG A 460 -1 O HIS A 457 N LEU A 449 SHEET 1 AA3 9 LYS A 176 ASN A 182 0 SHEET 2 AA3 9 GLU A 231 HIS A 236 1 O HIS A 236 N VAL A 179 SHEET 3 AA3 9 THR A 267 ASN A 269 1 O ASN A 269 N ILE A 235 SHEET 4 AA3 9 GLN A 310 ILE A 313 1 O GLN A 310 N MET A 268 SHEET 5 AA3 9 LEU A 88 ALA A 93 1 N ARG A 91 O ILE A 313 SHEET 6 AA3 9 HIS A 112 ALA A 115 1 O HIS A 112 N TYR A 92 SHEET 7 AA3 9 ILE A 134 SER A 137 1 O SER A 135 N ALA A 115 SHEET 8 AA3 9 LYS A 154 ALA A 157 1 O ASN A 156 N LEU A 136 SHEET 9 AA3 9 LYS A 176 ASN A 182 1 O GLY A 178 N ALA A 157 SHEET 1 AA5 6 ILE B 366 LEU B 369 0 SHEET 2 AA5 6 GLY B 419 MET B 424 -1 O VAL B 423 N THR B 367 SHEET 3 AA5 6 GLY B 324 HIS B 335 -1 N LEU B 326 O MET B 424 SHEET 4 AA5 6 THR B 343 LEU B 347 -1 O PHE B 344 N VAL B 334 SHEET 5 AA5 6 THR B 382 VAL B 388 1 O VAL B 386 N THR B 343 SHEET 6 AA5 6 GLN B 411 ARG B 414 -1 O GLN B 411 N VAL B 385 SHEET 1 AA6 6 ILE B 366 LEU B 369 0 SHEET 2 AA6 6 ILE B 421 MET B 424 -1 O VAL B 423 N THR B 367 SHEET 3 AA6 6 GLY B 324 HIS B 335 -1 N LEU B 326 O MET B 424 SHEET 4 AA6 6 LEU B 64 SER B 68 -1 N LEU B 64 O VAL B 327 SHEET 5 AA6 6 GLU B 447 ASP B 451 1 O VAL B 450 N TYR B 67 SHEET 6 AA6 6 GLY B 454 ARG B 460 -1 O HIS B 457 N LEU B 449 SHEET 1 AA7 9 LYS B 176 ASN B 182 0 SHEET 2 AA7 9 GLU B 231 HIS B 236 1 O GLU B 233 N VAL B 177 SHEET 3 AA7 9 THR B 267 ASN B 269 1 O ASN B 269 N ILE B 235 SHEET 4 AA7 9 GLN B 310 ILE B 313 1 O GLN B 310 N MET B 268 SHEET 5 AA7 9 LEU B 88 ALA B 93 1 N ARG B 91 O ILE B 313 SHEET 6 AA7 9 HIS B 112 ALA B 115 1 O HIS B 112 N VAL B 90 SHEET 7 AA7 9 ILE B 134 LEU B 136 1 O SER B 135 N ALA B 115 SHEET 8 AA7 9 LYS B 154 ALA B 157 1 O LYS B 154 N LEU B 136 SHEET 9 AA7 9 LYS B 176 ASN B 182 1 O ARG B 180 N ALA B 157 CISPEP 1 THR A 62 PRO A 63 0 -1.49 CISPEP 2 LYS A 173 GLY A 174 0 -17.81 CISPEP 3 THR B 62 PRO B 63 0 -1.04 CISPEP 4 PHE B 209 GLY B 210 0 -4.13 SITE 1 AC1 4 LYS A 275 VAL A 276 ARG A 278 ARG A 356 SITE 1 AC2 5 GLY A 273 GLY A 316 THR A 317 TYR A 430 SITE 2 AC2 5 HOH A 615 SITE 1 AC3 3 THR A 464 LEU A 465 HOH A 609 SITE 1 AC4 2 ALA A 75 TYR A 318 SITE 1 AC5 5 GLY B 273 GLY B 316 THR B 317 TYR B 430 SITE 2 AC5 5 HOH B 611 SITE 1 AC6 2 THR B 464 LEU B 465 SITE 1 AC7 2 GLU B 383 SER B 384 SITE 1 AC8 4 ASN A 110 GLN B 288 LYS B 289 LYS B 292 CRYST1 85.780 86.324 127.196 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011658 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007862 0.00000