HEADER OXIDOREDUCTASE 11-AUG-20 7JQH TITLE STRUCTURE OF WILD TYPE GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A FROM TITLE 2 ESCHERICHIA COLI IN COMPLEX WITH PHOSPHATE AND NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-KETOACID REDUCTASE; COMPND 5 EC: 1.1.1.79,1.1.1.81; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: BL21(DE3); SOURCE 5 GENE: GHRA, ECBD_2566; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.VUKSANOVIC,N.R.SILVAGGI REVDAT 2 18-OCT-23 7JQH 1 REMARK REVDAT 1 08-SEP-21 7JQH 0 JRNL AUTH N.VUKSANOVIC,N.R.SILVAGGI JRNL TITL STRUCTURE OF WILD TYPE GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE JRNL TITL 2 A FROM ESCHERICHIA COLI IN COMPLEX WITH PHOSPHATE AND NADP+ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 49370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0300 - 4.8200 1.00 3645 154 0.1785 0.1957 REMARK 3 2 4.8200 - 3.8200 1.00 3465 147 0.1286 0.1399 REMARK 3 3 3.8200 - 3.3400 1.00 3427 144 0.1480 0.1585 REMARK 3 4 3.3400 - 3.0300 1.00 3397 143 0.1652 0.1644 REMARK 3 5 3.0300 - 2.8200 1.00 3380 143 0.1648 0.2108 REMARK 3 6 2.8200 - 2.6500 1.00 3362 143 0.1590 0.1959 REMARK 3 7 2.6500 - 2.5200 1.00 3350 140 0.1463 0.1703 REMARK 3 8 2.5200 - 2.4100 1.00 3362 142 0.1449 0.1682 REMARK 3 9 2.4100 - 2.3200 1.00 3344 142 0.1376 0.1682 REMARK 3 10 2.3200 - 2.2400 1.00 3341 141 0.1353 0.1760 REMARK 3 11 2.2400 - 2.1700 1.00 3321 140 0.1448 0.1956 REMARK 3 12 2.1700 - 2.1000 1.00 3356 141 0.1558 0.1803 REMARK 3 13 2.1000 - 2.0500 1.00 3306 141 0.1598 0.1865 REMARK 3 14 2.0500 - 2.0000 1.00 3314 139 0.1699 0.2060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.135 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.022 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2617 REMARK 3 ANGLE : 1.280 3577 REMARK 3 CHIRALITY : 0.065 384 REMARK 3 PLANARITY : 0.010 457 REMARK 3 DIHEDRAL : 8.645 1539 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5014 66.7335 -43.6828 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.3209 REMARK 3 T33: 0.1128 T12: 0.0159 REMARK 3 T13: -0.0188 T23: 0.0769 REMARK 3 L TENSOR REMARK 3 L11: 0.0174 L22: 0.0205 REMARK 3 L33: 0.0203 L12: 0.0197 REMARK 3 L13: 0.0124 L23: 0.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.1624 S12: 0.3522 S13: 0.0051 REMARK 3 S21: -0.1255 S22: 0.0206 S23: -0.0175 REMARK 3 S31: -0.1133 S32: -0.2217 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3650 59.0294 -32.8571 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: 0.1571 REMARK 3 T33: 0.0965 T12: -0.0251 REMARK 3 T13: 0.0022 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: -0.0057 L22: 0.0046 REMARK 3 L33: 0.0059 L12: 0.0045 REMARK 3 L13: -0.0099 L23: -0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.1380 S13: 0.0345 REMARK 3 S21: 0.0645 S22: 0.0453 S23: 0.0138 REMARK 3 S31: 0.0258 S32: -0.0371 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1936 67.9867 -4.1537 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.1039 REMARK 3 T33: 0.0831 T12: -0.0234 REMARK 3 T13: 0.0067 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.0316 L22: 0.1056 REMARK 3 L33: 0.0199 L12: -0.0396 REMARK 3 L13: -0.0063 L23: 0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.0177 S13: 0.0117 REMARK 3 S21: 0.0302 S22: -0.0055 S23: -0.0072 REMARK 3 S31: 0.0438 S32: 0.0233 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0045 54.2400 -9.9216 REMARK 3 T TENSOR REMARK 3 T11: 0.1149 T22: 0.0922 REMARK 3 T33: 0.1580 T12: -0.0270 REMARK 3 T13: 0.0176 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.0161 L22: 0.0297 REMARK 3 L33: 0.0126 L12: -0.0114 REMARK 3 L13: 0.0175 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.0547 S13: -0.1557 REMARK 3 S21: 0.0374 S22: -0.0067 S23: 0.0893 REMARK 3 S31: 0.1387 S32: -0.0014 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0479 57.7733 -13.6039 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.1240 REMARK 3 T33: 0.1323 T12: -0.0423 REMARK 3 T13: 0.0075 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.0032 L22: 0.0050 REMARK 3 L33: 0.0030 L12: -0.0039 REMARK 3 L13: 0.0011 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: 0.0372 S13: -0.0806 REMARK 3 S21: 0.0231 S22: 0.0273 S23: 0.0829 REMARK 3 S31: 0.0007 S32: -0.0072 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1300 62.0599 -16.5447 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.1587 REMARK 3 T33: 0.1242 T12: -0.0463 REMARK 3 T13: -0.0021 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.0226 L22: 0.0163 REMARK 3 L33: 0.0094 L12: -0.0224 REMARK 3 L13: 0.0005 L23: 0.0026 REMARK 3 S TENSOR REMARK 3 S11: 0.0657 S12: -0.0058 S13: -0.0034 REMARK 3 S21: -0.0835 S22: -0.0840 S23: 0.0082 REMARK 3 S31: -0.0099 S32: -0.0998 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2611 69.3516 -31.1820 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.1745 REMARK 3 T33: 0.1642 T12: 0.0076 REMARK 3 T13: 0.0330 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: -0.0005 L22: -0.0007 REMARK 3 L33: 0.0071 L12: -0.0022 REMARK 3 L13: -0.0188 L23: -0.0111 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 0.0052 S13: 0.0129 REMARK 3 S21: 0.1084 S22: 0.0759 S23: 0.0032 REMARK 3 S31: -0.0993 S32: 0.0048 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000250834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49378 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 46.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M NAH2PO4/K2HPO4 PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.13267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.56633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.84950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.28317 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.41583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.13267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.56633 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 16.28317 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.84950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 81.41583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -79.38400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 137.49712 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -16.28317 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 582 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 CYS A 303 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 -94.32 63.50 REMARK 500 ALA A 226 -88.51 -107.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 405 DBREF1 7JQH A 1 312 UNP A0A140NAE3_ECOBD DBREF2 7JQH A A0A140NAE3 1 312 SEQADV 7JQH HIS A -12 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH HIS A -11 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH HIS A -10 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH HIS A -9 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH HIS A -8 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH HIS A -7 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH GLU A -6 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH ASN A -5 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH LEU A -4 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH TYR A -3 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH PHE A -2 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH GLN A -1 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQH GLY A 0 UNP A0A140NAE EXPRESSION TAG SEQRES 1 A 325 HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN GLY SEQRES 2 A 325 MET ASP ILE ILE PHE TYR HIS PRO THR PHE ASP THR GLN SEQRES 3 A 325 TRP TRP ILE GLU ALA LEU ARG LYS ALA ILE PRO GLN ALA SEQRES 4 A 325 ARG VAL ARG ALA TRP LYS SER GLY ASP ASN ASP SER ALA SEQRES 5 A 325 ASP TYR ALA LEU VAL TRP HIS PRO PRO VAL GLU MET LEU SEQRES 6 A 325 ALA GLY ARG ASP LEU LYS ALA VAL PHE ALA LEU GLY ALA SEQRES 7 A 325 GLY VAL ASP SER ILE LEU SER LYS LEU GLN ALA HIS PRO SEQRES 8 A 325 GLU MET LEU ASN PRO SER VAL PRO LEU PHE ARG LEU GLU SEQRES 9 A 325 ASP THR GLY MET GLY GLU GLN MET GLN GLU TYR ALA VAL SEQRES 10 A 325 SER GLN VAL LEU HIS TRP PHE ARG ARG PHE ASP ASP TYR SEQRES 11 A 325 ARG ILE GLN GLN ASN SER SER HIS TRP GLN PRO LEU PRO SEQRES 12 A 325 GLU TYR HIS ARG GLU ASP PHE THR ILE GLY ILE LEU GLY SEQRES 13 A 325 ALA GLY VAL LEU GLY SER LYS VAL ALA GLN SER LEU GLN SEQRES 14 A 325 THR TRP ARG PHE PRO LEU ARG CYS TRP SER ARG THR ARG SEQRES 15 A 325 LYS SER TRP PRO GLY VAL GLN SER PHE ALA GLY ARG GLU SEQRES 16 A 325 GLU LEU SER ALA PHE LEU SER GLN CYS ARG VAL LEU ILE SEQRES 17 A 325 ASN LEU LEU PRO ASN THR PRO GLU THR VAL GLY ILE ILE SEQRES 18 A 325 ASN GLN GLN LEU LEU GLU LYS LEU PRO ASP GLY ALA TYR SEQRES 19 A 325 LEU LEU ASN LEU ALA ARG GLY VAL HIS VAL VAL GLU ASP SEQRES 20 A 325 ASP LEU LEU ALA ALA LEU ASP SER GLY LYS VAL LYS GLY SEQRES 21 A 325 ALA MET LEU ASP VAL PHE ASN ARG GLU PRO LEU PRO PRO SEQRES 22 A 325 GLU SER PRO LEU TRP GLN HIS PRO ARG VAL THR ILE THR SEQRES 23 A 325 PRO HIS VAL ALA ALA ILE THR ARG PRO ALA GLU ALA VAL SEQRES 24 A 325 GLU TYR ILE SER ARG THR ILE ALA GLN LEU GLU LYS GLY SEQRES 25 A 325 GLU LYS VAL CYS GLY GLN VAL ASP ARG ALA ARG GLY TYR HET GOL A 401 14 HET NAP A 402 73 HET PO4 A 403 5 HET PO4 A 404 5 HET PO4 A 405 5 HETNAM GOL GLYCEROL HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 GOL C3 H8 O3 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 PO4 3(O4 P 3-) FORMUL 7 HOH *306(H2 O) HELIX 1 AA1 ASP A 11 ILE A 23 1 13 HELIX 2 AA2 PRO A 48 ALA A 53 1 6 HELIX 3 AA3 VAL A 67 HIS A 77 1 11 HELIX 4 AA4 GLY A 94 ARG A 112 1 19 HELIX 5 AA5 ARG A 113 SER A 123 1 11 HELIX 6 AA6 HIS A 133 PHE A 137 5 5 HELIX 7 AA7 GLY A 145 THR A 157 1 13 HELIX 8 AA8 GLU A 183 GLN A 190 1 8 HELIX 9 AA9 ASN A 209 GLU A 214 1 6 HELIX 10 AB1 ARG A 227 VAL A 231 5 5 HELIX 11 AB2 VAL A 232 SER A 242 1 11 HELIX 12 AB3 ARG A 281 GLY A 299 1 19 SHEET 1 AA1 5 ALA A 26 ALA A 30 0 SHEET 2 AA1 5 MET A 1 TYR A 6 1 N MET A 1 O ARG A 27 SHEET 3 AA1 5 TYR A 41 VAL A 44 1 O LEU A 43 N ILE A 4 SHEET 4 AA1 5 ALA A 59 ALA A 62 1 O PHE A 61 N ALA A 42 SHEET 5 AA1 5 LEU A 87 PHE A 88 1 O PHE A 88 N ALA A 62 SHEET 1 AA2 7 VAL A 175 ALA A 179 0 SHEET 2 AA2 7 LEU A 162 SER A 166 1 N CYS A 164 O PHE A 178 SHEET 3 AA2 7 ILE A 139 LEU A 142 1 N ILE A 141 O ARG A 163 SHEET 4 AA2 7 VAL A 193 ASN A 196 1 O VAL A 193 N GLY A 140 SHEET 5 AA2 7 ALA A 220 ASN A 224 1 O LEU A 223 N ASN A 196 SHEET 6 AA2 7 VAL A 245 LEU A 250 1 O MET A 249 N LEU A 222 SHEET 7 AA2 7 VAL A 270 ILE A 272 1 O THR A 271 N LEU A 250 CISPEP 1 GLU A 256 PRO A 257 0 -7.94 SITE 1 AC1 7 GLU A 97 GLN A 100 SER A 154 THR A 157 SITE 2 AC1 7 TRP A 158 HOH A 520 HOH A 565 SITE 1 AC2 37 ALA A 65 ARG A 89 MET A 99 GLY A 143 SITE 2 AC2 37 ALA A 144 GLY A 145 VAL A 146 LEU A 147 SITE 3 AC2 37 TRP A 165 SER A 166 ARG A 167 THR A 168 SITE 4 AC2 37 LYS A 170 LEU A 197 LEU A 198 PRO A 199 SITE 5 AC2 37 LEU A 225 ALA A 226 ARG A 227 ASP A 251 SITE 6 AC2 37 VAL A 252 HIS A 275 ALA A 277 ALA A 278 SITE 7 AC2 37 TYR A 312 PO4 A 403 PO4 A 404 HOH A 533 SITE 8 AC2 37 HOH A 543 HOH A 544 HOH A 546 HOH A 548 SITE 9 AC2 37 HOH A 567 HOH A 643 HOH A 645 HOH A 646 SITE 10 AC2 37 HOH A 660 SITE 1 AC3 8 ALA A 65 GLY A 66 ARG A 227 HIS A 275 SITE 2 AC3 8 NAP A 402 HOH A 511 HOH A 667 HOH A 671 SITE 1 AC4 7 TRP A 165 ARG A 167 GLY A 180 ARG A 181 SITE 2 AC4 7 NAP A 402 HOH A 502 HOH A 561 SITE 1 AC5 6 HIS A 133 ARG A 134 ARG A 159 ARG A 281 SITE 2 AC5 6 HOH A 506 HOH A 521 CRYST1 158.768 158.768 97.699 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006298 0.003636 0.000000 0.00000 SCALE2 0.000000 0.007273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010236 0.00000