HEADER OXIDOREDUCTASE 11-AUG-20 7JQI TITLE STRUCTURE OF WILD TYPE GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A FROM TITLE 2 ESCHERICHIA COLI IN COMPLEX WITH ALPHA-KETOGLUTARATE AND NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-KETOACID REDUCTASE; COMPND 5 EC: 1.1.1.79,1.1.1.81; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: BL21(DE3); SOURCE 5 GENE: GHRA, ECBD_2566; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.VUKSANOVIC,N.R.SILVAGGI REVDAT 2 18-OCT-23 7JQI 1 REMARK REVDAT 1 08-SEP-21 7JQI 0 JRNL AUTH N.VUKSANOVIC,N.R.SILVAGGI JRNL TITL STRUCTURE OF WILD TYPE GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE JRNL TITL 2 A FROM ESCHERICHIA COLI IN COMPLEX WITH ALPHA-KETOGLUTARATE JRNL TITL 3 AND NADP+ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 28325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8700 - 5.1700 0.98 2882 143 0.1719 0.2002 REMARK 3 2 5.1700 - 4.1000 1.00 2746 143 0.1267 0.1686 REMARK 3 3 4.1000 - 3.5800 0.99 2703 140 0.1398 0.1527 REMARK 3 4 3.5800 - 3.2600 1.00 2686 142 0.1708 0.2138 REMARK 3 5 3.2600 - 3.0200 1.00 2694 128 0.1803 0.2581 REMARK 3 6 3.0200 - 2.8400 1.00 2690 126 0.1788 0.2303 REMARK 3 7 2.8400 - 2.7000 1.00 2668 124 0.1667 0.2171 REMARK 3 8 2.7000 - 2.5800 1.00 2639 162 0.1601 0.1828 REMARK 3 9 2.5800 - 2.4800 1.00 2649 138 0.1666 0.2133 REMARK 3 10 2.4800 - 2.4000 0.98 2565 157 0.1700 0.2133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.202 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2609 REMARK 3 ANGLE : 1.269 3565 REMARK 3 CHIRALITY : 0.058 384 REMARK 3 PLANARITY : 0.008 460 REMARK 3 DIHEDRAL : 10.001 1543 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0096 72.4850 -42.3127 REMARK 3 T TENSOR REMARK 3 T11: 0.3663 T22: 0.5491 REMARK 3 T33: 0.3625 T12: 0.1550 REMARK 3 T13: 0.0355 T23: 0.1318 REMARK 3 L TENSOR REMARK 3 L11: 5.2454 L22: 6.8238 REMARK 3 L33: 6.8104 L12: -0.0316 REMARK 3 L13: -2.0648 L23: 1.1222 REMARK 3 S TENSOR REMARK 3 S11: 0.4542 S12: 1.3222 S13: 0.8434 REMARK 3 S21: -0.1959 S22: 0.0038 S23: 0.4910 REMARK 3 S31: -0.9619 S32: -1.1267 S33: -0.4451 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3264 60.9331 -43.7493 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.4292 REMARK 3 T33: 0.2615 T12: -0.0253 REMARK 3 T13: -0.0157 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 6.2788 L22: 6.3064 REMARK 3 L33: 5.9775 L12: 0.2035 REMARK 3 L13: 0.5569 L23: 0.0648 REMARK 3 S TENSOR REMARK 3 S11: 0.1723 S12: 0.9700 S13: -0.3289 REMARK 3 S21: -0.4249 S22: 0.0303 S23: 0.2728 REMARK 3 S31: 0.1293 S32: -0.5915 S33: -0.1615 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1438 59.2362 -32.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.3274 REMARK 3 T33: 0.2209 T12: -0.0134 REMARK 3 T13: -0.0377 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.3433 L22: 3.1440 REMARK 3 L33: 3.8938 L12: -1.9379 REMARK 3 L13: -2.9217 L23: 1.9356 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: -0.0800 S13: -0.1350 REMARK 3 S21: 0.1157 S22: 0.0823 S23: -0.0803 REMARK 3 S31: 0.1113 S32: 0.0248 S33: -0.0190 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8174 70.7209 -2.2101 REMARK 3 T TENSOR REMARK 3 T11: 0.2650 T22: 0.2442 REMARK 3 T33: 0.2605 T12: -0.0594 REMARK 3 T13: 0.0123 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 3.3304 L22: 1.0507 REMARK 3 L33: 1.6927 L12: -0.7074 REMARK 3 L13: -1.4874 L23: 0.0778 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: -0.1883 S13: -0.1145 REMARK 3 S21: 0.2269 S22: 0.0162 S23: 0.1366 REMARK 3 S31: 0.0320 S32: -0.0375 S33: -0.0317 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9294 70.5633 -6.8861 REMARK 3 T TENSOR REMARK 3 T11: 0.2434 T22: 0.3666 REMARK 3 T33: 0.3226 T12: -0.0511 REMARK 3 T13: -0.0388 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.0663 L22: 1.2907 REMARK 3 L33: 1.6702 L12: -1.1550 REMARK 3 L13: -1.1920 L23: 1.4452 REMARK 3 S TENSOR REMARK 3 S11: 0.1090 S12: -0.1764 S13: 0.2874 REMARK 3 S21: 0.0781 S22: 0.0719 S23: -0.3847 REMARK 3 S31: -0.1489 S32: 0.3139 S33: -0.1838 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1500 60.6257 -4.9879 REMARK 3 T TENSOR REMARK 3 T11: 0.2358 T22: 0.2282 REMARK 3 T33: 0.1556 T12: -0.0273 REMARK 3 T13: -0.0330 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 9.6046 L22: 2.6058 REMARK 3 L33: 3.7391 L12: 0.4529 REMARK 3 L13: -2.1122 L23: -3.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.1457 S12: -0.4269 S13: -0.2666 REMARK 3 S21: 0.1036 S22: -0.2416 S23: -0.0959 REMARK 3 S31: 0.1427 S32: 0.4405 S33: 0.0857 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6837 54.5768 -8.5798 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.2797 REMARK 3 T33: 0.3052 T12: -0.0414 REMARK 3 T13: -0.0436 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.3448 L22: 4.0284 REMARK 3 L33: 2.0683 L12: -1.7880 REMARK 3 L13: -3.2247 L23: 2.9306 REMARK 3 S TENSOR REMARK 3 S11: -0.2184 S12: -0.1537 S13: -0.4665 REMARK 3 S21: 0.2677 S22: -0.0098 S23: 0.0910 REMARK 3 S31: 0.5210 S32: 0.0260 S33: 0.1993 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6940 55.5238 -12.7899 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.2046 REMARK 3 T33: 0.2564 T12: -0.0855 REMARK 3 T13: -0.0103 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 3.1175 L22: 2.6216 REMARK 3 L33: 2.8713 L12: -0.5703 REMARK 3 L13: -0.8968 L23: -2.4064 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: 0.1153 S13: -0.3217 REMARK 3 S21: -0.0747 S22: 0.1437 S23: 0.2849 REMARK 3 S31: 0.3559 S32: -0.2416 S33: -0.1434 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2409 61.9743 -16.2127 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.2982 REMARK 3 T33: 0.1919 T12: -0.0803 REMARK 3 T13: -0.0285 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 4.6631 L22: 4.7210 REMARK 3 L33: 4.0025 L12: 0.9246 REMARK 3 L13: -2.4506 L23: -2.6609 REMARK 3 S TENSOR REMARK 3 S11: -0.0531 S12: 0.1289 S13: -0.1768 REMARK 3 S21: -0.1146 S22: 0.0739 S23: 0.2913 REMARK 3 S31: 0.2297 S32: -0.3468 S33: -0.0274 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7445 69.2776 -30.6989 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.2934 REMARK 3 T33: 0.2730 T12: -0.0183 REMARK 3 T13: -0.0157 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 2.5411 L22: 2.9493 REMARK 3 L33: 4.4589 L12: 2.7098 REMARK 3 L13: -3.3746 L23: -3.5962 REMARK 3 S TENSOR REMARK 3 S11: 0.1662 S12: -0.2113 S13: 0.1665 REMARK 3 S21: 0.2839 S22: -0.1667 S23: -0.3780 REMARK 3 S31: -0.2641 S32: 0.3613 S33: 0.0178 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000250833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28335 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.399 REMARK 200 RESOLUTION RANGE LOW (A) : 45.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JQH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17%PEG 3350, 0.25 M LI2SO4, 1.8 MM REMARK 280 NADP+, 0.1 M BIS TRIS PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.06067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.03033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.04550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.01517 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.07583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.06067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.03033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 16.01517 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 48.04550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.07583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -79.44350 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 137.60018 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -16.01517 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 670 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 CYS A 303 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 142 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 9 -12.55 -144.54 REMARK 500 ASP A 11 84.37 -67.20 REMARK 500 ASP A 92 -94.44 65.89 REMARK 500 GLN A 127 100.78 -161.75 REMARK 500 ALA A 226 -91.92 -108.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 709 DISTANCE = 6.33 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 402 DBREF1 7JQI A 1 312 UNP A0A140NAE3_ECOBD DBREF2 7JQI A A0A140NAE3 1 312 SEQADV 7JQI HIS A -12 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI HIS A -11 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI HIS A -10 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI HIS A -9 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI HIS A -8 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI HIS A -7 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI GLU A -6 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI ASN A -5 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI LEU A -4 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI TYR A -3 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI PHE A -2 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI GLN A -1 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQI GLY A 0 UNP A0A140NAE EXPRESSION TAG SEQRES 1 A 325 HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN GLY SEQRES 2 A 325 MET ASP ILE ILE PHE TYR HIS PRO THR PHE ASP THR GLN SEQRES 3 A 325 TRP TRP ILE GLU ALA LEU ARG LYS ALA ILE PRO GLN ALA SEQRES 4 A 325 ARG VAL ARG ALA TRP LYS SER GLY ASP ASN ASP SER ALA SEQRES 5 A 325 ASP TYR ALA LEU VAL TRP HIS PRO PRO VAL GLU MET LEU SEQRES 6 A 325 ALA GLY ARG ASP LEU LYS ALA VAL PHE ALA LEU GLY ALA SEQRES 7 A 325 GLY VAL ASP SER ILE LEU SER LYS LEU GLN ALA HIS PRO SEQRES 8 A 325 GLU MET LEU ASN PRO SER VAL PRO LEU PHE ARG LEU GLU SEQRES 9 A 325 ASP THR GLY MET GLY GLU GLN MET GLN GLU TYR ALA VAL SEQRES 10 A 325 SER GLN VAL LEU HIS TRP PHE ARG ARG PHE ASP ASP TYR SEQRES 11 A 325 ARG ILE GLN GLN ASN SER SER HIS TRP GLN PRO LEU PRO SEQRES 12 A 325 GLU TYR HIS ARG GLU ASP PHE THR ILE GLY ILE LEU GLY SEQRES 13 A 325 ALA GLY VAL LEU GLY SER LYS VAL ALA GLN SER LEU GLN SEQRES 14 A 325 THR TRP ARG PHE PRO LEU ARG CYS TRP SER ARG THR ARG SEQRES 15 A 325 LYS SER TRP PRO GLY VAL GLN SER PHE ALA GLY ARG GLU SEQRES 16 A 325 GLU LEU SER ALA PHE LEU SER GLN CYS ARG VAL LEU ILE SEQRES 17 A 325 ASN LEU LEU PRO ASN THR PRO GLU THR VAL GLY ILE ILE SEQRES 18 A 325 ASN GLN GLN LEU LEU GLU LYS LEU PRO ASP GLY ALA TYR SEQRES 19 A 325 LEU LEU ASN LEU ALA ARG GLY VAL HIS VAL VAL GLU ASP SEQRES 20 A 325 ASP LEU LEU ALA ALA LEU ASP SER GLY LYS VAL LYS GLY SEQRES 21 A 325 ALA MET LEU ASP VAL PHE ASN ARG GLU PRO LEU PRO PRO SEQRES 22 A 325 GLU SER PRO LEU TRP GLN HIS PRO ARG VAL THR ILE THR SEQRES 23 A 325 PRO HIS VAL ALA ALA ILE THR ARG PRO ALA GLU ALA VAL SEQRES 24 A 325 GLU TYR ILE SER ARG THR ILE ALA GLN LEU GLU LYS GLY SEQRES 25 A 325 GLU LYS VAL CYS GLY GLN VAL ASP ARG ALA ARG GLY TYR HET AKG A 401 14 HET NAP A 402 73 HETNAM AKG 2-OXOGLUTARIC ACID HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 AKG C5 H6 O5 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 HOH *209(H2 O) HELIX 1 AA1 ASP A 11 ILE A 23 1 13 HELIX 2 AA2 PRO A 48 ALA A 53 1 6 HELIX 3 AA3 VAL A 67 HIS A 77 1 11 HELIX 4 AA4 GLY A 94 ARG A 112 1 19 HELIX 5 AA5 ARG A 113 SER A 123 1 11 HELIX 6 AA6 HIS A 133 PHE A 137 5 5 HELIX 7 AA7 GLY A 145 TRP A 158 1 14 HELIX 8 AA8 GLU A 183 GLN A 190 1 8 HELIX 9 AA9 ASN A 209 LEU A 216 1 8 HELIX 10 AB1 ARG A 227 VAL A 231 5 5 HELIX 11 AB2 VAL A 232 SER A 242 1 11 HELIX 12 AB3 ARG A 281 GLY A 299 1 19 SHEET 1 AA1 5 ARG A 27 ALA A 30 0 SHEET 2 AA1 5 ASP A 2 TYR A 6 1 N ILE A 3 O ARG A 27 SHEET 3 AA1 5 TYR A 41 VAL A 44 1 O LEU A 43 N ILE A 4 SHEET 4 AA1 5 ALA A 59 ALA A 62 1 O PHE A 61 N ALA A 42 SHEET 5 AA1 5 LEU A 87 PHE A 88 1 O PHE A 88 N ALA A 62 SHEET 1 AA2 7 VAL A 175 ALA A 179 0 SHEET 2 AA2 7 LEU A 162 SER A 166 1 N CYS A 164 O PHE A 178 SHEET 3 AA2 7 ILE A 139 LEU A 142 1 N ILE A 139 O ARG A 163 SHEET 4 AA2 7 VAL A 193 ASN A 196 1 O ILE A 195 N GLY A 140 SHEET 5 AA2 7 ALA A 220 ASN A 224 1 O LEU A 223 N ASN A 196 SHEET 6 AA2 7 VAL A 245 LEU A 250 1 O MET A 249 N LEU A 222 SHEET 7 AA2 7 VAL A 270 ILE A 272 1 O THR A 271 N LEU A 250 CISPEP 1 GLU A 256 PRO A 257 0 -5.91 SITE 1 AC1 8 TRP A 45 GLY A 64 ALA A 65 GLY A 66 SITE 2 AC1 8 ARG A 227 HIS A 275 ALA A 278 NAP A 402 SITE 1 AC2 34 ALA A 65 ARG A 89 MET A 99 GLY A 143 SITE 2 AC2 34 ALA A 144 GLY A 145 VAL A 146 LEU A 147 SITE 3 AC2 34 TRP A 165 SER A 166 ARG A 167 THR A 168 SITE 4 AC2 34 LYS A 170 LEU A 197 LEU A 198 PRO A 199 SITE 5 AC2 34 LEU A 225 ALA A 226 ARG A 227 ASP A 251 SITE 6 AC2 34 HIS A 275 ALA A 277 ALA A 278 TYR A 312 SITE 7 AC2 34 AKG A 401 HOH A 520 HOH A 544 HOH A 546 SITE 8 AC2 34 HOH A 563 HOH A 581 HOH A 588 HOH A 590 SITE 9 AC2 34 HOH A 609 HOH A 634 CRYST1 158.887 158.887 96.091 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006294 0.003634 0.000000 0.00000 SCALE2 0.000000 0.007267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010407 0.00000