HEADER OXIDOREDUCTASE 11-AUG-20 7JQJ TITLE STRUCTURE OF W45F GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A FROM TITLE 2 ESCHERICHIA COLI IN COMPLEX WITH NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-KETOACID REDUCTASE; COMPND 5 EC: 1.1.1.79,1.1.1.81; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: BL21(DE3); SOURCE 5 GENE: GHRA, ECBD_2566; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.VUKSANOVIC,N.R.SILVAGGI REVDAT 2 18-OCT-23 7JQJ 1 REMARK REVDAT 1 08-SEP-21 7JQJ 0 JRNL AUTH N.VUKSANOVIC,N.R.SILVAGGI JRNL TITL STRUCTURE OF W45F GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A JRNL TITL 2 FROM ESCHERICHIA COLI IN COMPLEX WITH NADP+ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 35510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2300 - 5.1800 0.98 2849 131 0.2093 0.2023 REMARK 3 2 5.1800 - 4.1100 1.00 2740 135 0.1475 0.1340 REMARK 3 3 4.1100 - 3.5900 1.00 2685 161 0.1495 0.1613 REMARK 3 4 3.5900 - 3.2600 1.00 2661 149 0.1799 0.2132 REMARK 3 5 3.2600 - 3.0300 1.00 2656 144 0.1865 0.1958 REMARK 3 6 3.0300 - 2.8500 1.00 2643 136 0.1910 0.2347 REMARK 3 7 2.8500 - 2.7100 1.00 2616 153 0.2025 0.2280 REMARK 3 8 2.7100 - 2.5900 1.00 2635 142 0.2032 0.2109 REMARK 3 9 2.5900 - 2.4900 1.00 2650 118 0.2055 0.2285 REMARK 3 10 2.4900 - 2.4100 1.00 2625 129 0.2101 0.1936 REMARK 3 11 2.4100 - 2.3300 0.97 2555 128 0.2167 0.2588 REMARK 3 12 2.3300 - 2.2600 0.90 2341 126 0.2374 0.2258 REMARK 3 13 2.2600 - 2.2000 0.80 2091 111 0.2634 0.2643 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2564 REMARK 3 ANGLE : 1.005 3506 REMARK 3 CHIRALITY : 0.053 383 REMARK 3 PLANARITY : 0.006 450 REMARK 3 DIHEDRAL : 9.093 1516 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6779 64.4863 -39.3415 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.3647 REMARK 3 T33: 0.2328 T12: -0.0363 REMARK 3 T13: -0.0032 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.3499 L22: 5.4399 REMARK 3 L33: 4.7754 L12: -1.2573 REMARK 3 L13: -0.8241 L23: 0.7365 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: 0.5173 S13: -0.0843 REMARK 3 S21: -0.2703 S22: -0.0142 S23: 0.2458 REMARK 3 S31: -0.0872 S32: -0.3971 S33: -0.0850 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6833 70.7619 -3.5911 REMARK 3 T TENSOR REMARK 3 T11: 0.2014 T22: 0.2132 REMARK 3 T33: 0.1990 T12: -0.0546 REMARK 3 T13: -0.0173 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.5167 L22: 1.0364 REMARK 3 L33: 1.6213 L12: -1.0068 REMARK 3 L13: -0.9572 L23: 0.3654 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: -0.2716 S13: -0.0455 REMARK 3 S21: 0.1235 S22: 0.0218 S23: -0.0396 REMARK 3 S31: -0.0442 S32: 0.1372 S33: -0.0558 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2710 58.0954 -10.0021 REMARK 3 T TENSOR REMARK 3 T11: 0.2426 T22: 0.1592 REMARK 3 T33: 0.2039 T12: -0.0459 REMARK 3 T13: 0.0173 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 4.8306 L22: 1.1579 REMARK 3 L33: 2.2523 L12: -0.5592 REMARK 3 L13: 1.0364 L23: -0.4008 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: -0.0613 S13: -0.3618 REMARK 3 S21: -0.0294 S22: -0.0373 S23: 0.0479 REMARK 3 S31: 0.2884 S32: -0.0677 S33: -0.0025 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9194 69.4053 -30.7507 REMARK 3 T TENSOR REMARK 3 T11: 0.2650 T22: 0.2698 REMARK 3 T33: 0.2531 T12: -0.0211 REMARK 3 T13: -0.0314 T23: -0.1243 REMARK 3 L TENSOR REMARK 3 L11: 4.1664 L22: 4.6769 REMARK 3 L33: 6.8373 L12: 2.6321 REMARK 3 L13: -3.4964 L23: -5.7114 REMARK 3 S TENSOR REMARK 3 S11: 0.1623 S12: -0.2864 S13: 0.2709 REMARK 3 S21: 0.1354 S22: -0.1227 S23: -0.3434 REMARK 3 S31: -0.2637 S32: 0.5333 S33: 0.0553 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000250835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 38.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JQH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% V/W PEG 4000, 20% V/V GLYCEROL, REMARK 280 0.1 M SODIUM CITRATE PH 5.8 0.1 M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.80600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.90300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.85450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.95150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.75750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.80600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 31.90300 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 15.95150 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.85450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 79.75750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -79.58850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 137.85133 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -15.95150 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 CYS A 303 REMARK 465 GLY A 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 GLN A 211 CG CD OE1 NE2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 91.83 -66.77 REMARK 500 ASP A 92 -97.28 63.17 REMARK 500 ASN A 209 -167.40 -122.13 REMARK 500 ALA A 226 -90.57 -109.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 DBREF1 7JQJ A 1 312 UNP A0A140NAE3_ECOBD DBREF2 7JQJ A A0A140NAE3 1 312 SEQADV 7JQJ HIS A -12 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ HIS A -11 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ HIS A -10 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ HIS A -9 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ HIS A -8 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ HIS A -7 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ GLU A -6 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ ASN A -5 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ LEU A -4 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ TYR A -3 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ PHE A -2 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ GLN A -1 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ GLY A 0 UNP A0A140NAE EXPRESSION TAG SEQADV 7JQJ PHE A 45 UNP A0A140NAE TRP 45 ENGINEERED MUTATION SEQRES 1 A 325 HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN GLY SEQRES 2 A 325 MET ASP ILE ILE PHE TYR HIS PRO THR PHE ASP THR GLN SEQRES 3 A 325 TRP TRP ILE GLU ALA LEU ARG LYS ALA ILE PRO GLN ALA SEQRES 4 A 325 ARG VAL ARG ALA TRP LYS SER GLY ASP ASN ASP SER ALA SEQRES 5 A 325 ASP TYR ALA LEU VAL PHE HIS PRO PRO VAL GLU MET LEU SEQRES 6 A 325 ALA GLY ARG ASP LEU LYS ALA VAL PHE ALA LEU GLY ALA SEQRES 7 A 325 GLY VAL ASP SER ILE LEU SER LYS LEU GLN ALA HIS PRO SEQRES 8 A 325 GLU MET LEU ASN PRO SER VAL PRO LEU PHE ARG LEU GLU SEQRES 9 A 325 ASP THR GLY MET GLY GLU GLN MET GLN GLU TYR ALA VAL SEQRES 10 A 325 SER GLN VAL LEU HIS TRP PHE ARG ARG PHE ASP ASP TYR SEQRES 11 A 325 ARG ILE GLN GLN ASN SER SER HIS TRP GLN PRO LEU PRO SEQRES 12 A 325 GLU TYR HIS ARG GLU ASP PHE THR ILE GLY ILE LEU GLY SEQRES 13 A 325 ALA GLY VAL LEU GLY SER LYS VAL ALA GLN SER LEU GLN SEQRES 14 A 325 THR TRP ARG PHE PRO LEU ARG CYS TRP SER ARG THR ARG SEQRES 15 A 325 LYS SER TRP PRO GLY VAL GLN SER PHE ALA GLY ARG GLU SEQRES 16 A 325 GLU LEU SER ALA PHE LEU SER GLN CYS ARG VAL LEU ILE SEQRES 17 A 325 ASN LEU LEU PRO ASN THR PRO GLU THR VAL GLY ILE ILE SEQRES 18 A 325 ASN GLN GLN LEU LEU GLU LYS LEU PRO ASP GLY ALA TYR SEQRES 19 A 325 LEU LEU ASN LEU ALA ARG GLY VAL HIS VAL VAL GLU ASP SEQRES 20 A 325 ASP LEU LEU ALA ALA LEU ASP SER GLY LYS VAL LYS GLY SEQRES 21 A 325 ALA MET LEU ASP VAL PHE ASN ARG GLU PRO LEU PRO PRO SEQRES 22 A 325 GLU SER PRO LEU TRP GLN HIS PRO ARG VAL THR ILE THR SEQRES 23 A 325 PRO HIS VAL ALA ALA ILE THR ARG PRO ALA GLU ALA VAL SEQRES 24 A 325 GLU TYR ILE SER ARG THR ILE ALA GLN LEU GLU LYS GLY SEQRES 25 A 325 GLU LYS VAL CYS GLY GLN VAL ASP ARG ALA ARG GLY TYR HET NAP A 401 73 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HOH *210(H2 O) HELIX 1 AA1 ASP A 11 ILE A 23 1 13 HELIX 2 AA2 PRO A 48 ALA A 53 1 6 HELIX 3 AA3 VAL A 67 HIS A 77 1 11 HELIX 4 AA4 GLY A 94 ARG A 112 1 19 HELIX 5 AA5 ARG A 113 SER A 123 1 11 HELIX 6 AA6 HIS A 133 PHE A 137 5 5 HELIX 7 AA7 GLY A 145 THR A 157 1 13 HELIX 8 AA8 GLU A 183 SER A 189 1 7 HELIX 9 AA9 ASN A 209 LEU A 216 1 8 HELIX 10 AB1 ARG A 227 VAL A 231 5 5 HELIX 11 AB2 VAL A 232 SER A 242 1 11 HELIX 12 AB3 ARG A 281 GLY A 299 1 19 SHEET 1 AA1 5 ARG A 27 ALA A 30 0 SHEET 2 AA1 5 ASP A 2 TYR A 6 1 N ILE A 3 O ARG A 27 SHEET 3 AA1 5 TYR A 41 VAL A 44 1 O LEU A 43 N TYR A 6 SHEET 4 AA1 5 ALA A 59 ALA A 62 1 O PHE A 61 N ALA A 42 SHEET 5 AA1 5 LEU A 87 PHE A 88 1 O PHE A 88 N ALA A 62 SHEET 1 AA2 7 VAL A 175 ALA A 179 0 SHEET 2 AA2 7 LEU A 162 SER A 166 1 N CYS A 164 O PHE A 178 SHEET 3 AA2 7 ILE A 139 LEU A 142 1 N ILE A 141 O ARG A 163 SHEET 4 AA2 7 VAL A 193 ASN A 196 1 O VAL A 193 N GLY A 140 SHEET 5 AA2 7 ALA A 220 ASN A 224 1 O TYR A 221 N LEU A 194 SHEET 6 AA2 7 VAL A 245 LEU A 250 1 O LYS A 246 N ALA A 220 SHEET 7 AA2 7 VAL A 270 ILE A 272 1 O THR A 271 N LEU A 250 CISPEP 1 GLU A 256 PRO A 257 0 -0.53 SITE 1 AC1 36 ALA A 65 ARG A 89 MET A 99 GLY A 143 SITE 2 AC1 36 ALA A 144 GLY A 145 VAL A 146 LEU A 147 SITE 3 AC1 36 TRP A 165 SER A 166 ARG A 167 THR A 168 SITE 4 AC1 36 LYS A 170 LEU A 197 LEU A 198 PRO A 199 SITE 5 AC1 36 THR A 204 LEU A 225 ALA A 226 ARG A 227 SITE 6 AC1 36 ASP A 251 HIS A 275 ALA A 277 ALA A 278 SITE 7 AC1 36 TYR A 312 HOH A 515 HOH A 523 HOH A 540 SITE 8 AC1 36 HOH A 547 HOH A 582 HOH A 592 HOH A 603 SITE 9 AC1 36 HOH A 604 HOH A 620 HOH A 640 HOH A 656 CRYST1 159.177 159.177 95.709 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006282 0.003627 0.000000 0.00000 SCALE2 0.000000 0.007254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010448 0.00000