HEADER ISOMERASE, TRANSFERASE/INHIBITOR 11-AUG-20 7JR6 TITLE H-PDGS COMPLEXED WITH A 2-PHENYLIMIDAZO[1,2-A]PYRIDINE-6-CARBOXAMIDE TITLE 2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: H-PGDS,GST CLASS-SIGMA,GLUTATHIONE S-TRANSFERASE, COMPND 5 GLUTATHIONE-DEPENDENT PGD SYNTHASE,GLUTATHIONE-REQUIRING COMPND 6 PROSTAGLANDIN D SYNTHASE,PROSTAGLANDIN-H2 D-ISOMERASE; COMPND 7 EC: 5.3.99.2,2.5.1.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPGDS, GSTS, PGDS, PTGDS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEMATOPOIETIC PROSTAGLANDIN D2 SYNTHASE, INHIBITOR, ISOMERASE, KEYWDS 2 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.T.NOLTE,D.O.SOMERS,R.T.GAMPE REVDAT 3 06-MAR-24 7JR6 1 REMARK REVDAT 2 30-JUN-21 7JR6 1 JRNL REVDAT 1 26-MAY-21 7JR6 0 JRNL AUTH C.A.SCHULTE,D.N.DEATON,E.DIAZ,Y.DO,R.T.GAMPE,J.H.GUSS, JRNL AUTH 2 A.P.HANCOCK,H.HOBBS,S.T.HODGSON,J.HOLT,M.R.JEUNE,K.M.KAHLER, JRNL AUTH 3 H.F.KRAMER,J.LE,P.N.MORTENSON,C.MUSETTI,R.T.NOLTE, JRNL AUTH 4 L.A.ORBAND-MILLER,G.E.PECKHAM,K.G.PETROV,B.L.PIETRAK, JRNL AUTH 5 C.POOLE,D.J.PRICE,G.SAXTY,A.SHILLINGS,T.L.SMALLEY JR., JRNL AUTH 6 D.O.SOMERS,E.L.STEWART,J.D.STUART,S.A.THOMSON JRNL TITL A KNOWLEDGE-BASED, STRUCTURAL-AIDED DISCOVERY OF A NOVEL JRNL TITL 2 CLASS OF 2-PHENYLIMIDAZO[1,2-A]PYRIDINE-6-CARBOXAMIDE H-PGDS JRNL TITL 3 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 47 28113 2021 JRNL REFN ESSN 1464-3405 JRNL PMID 33991628 JRNL DOI 10.1016/J.BMCL.2021.128113 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.6 REMARK 3 NUMBER OF REFLECTIONS : 30263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5700 - 4.4200 0.99 2694 156 0.1613 0.1915 REMARK 3 2 4.4200 - 3.5100 0.86 2280 163 0.1396 0.1793 REMARK 3 3 3.5100 - 3.0600 0.81 2159 126 0.1613 0.2225 REMARK 3 4 3.0600 - 2.7800 0.98 2602 165 0.1812 0.2247 REMARK 3 5 2.7800 - 2.5900 0.97 2564 158 0.1796 0.2400 REMARK 3 6 2.5800 - 2.4300 0.95 2516 150 0.1722 0.2266 REMARK 3 7 2.4300 - 2.3100 0.93 2464 158 0.1924 0.2682 REMARK 3 8 2.3100 - 2.2100 0.92 2413 162 0.2097 0.2640 REMARK 3 9 2.2100 - 2.1300 0.89 2352 157 0.2147 0.2779 REMARK 3 10 2.1300 - 2.0500 0.79 2116 116 0.2246 0.2689 REMARK 3 11 2.0500 - 1.9900 0.67 1783 100 0.2281 0.2836 REMARK 3 12 1.9900 - 1.9300 0.54 1454 76 0.2399 0.2703 REMARK 3 13 1.9300 - 1.8800 0.42 1102 77 0.2594 0.3032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.222 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3463 REMARK 3 ANGLE : 0.680 4725 REMARK 3 CHIRALITY : 0.042 515 REMARK 3 PLANARITY : 0.005 600 REMARK 3 DIHEDRAL : 19.386 1253 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.9940 5.3697 68.7919 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.2486 REMARK 3 T33: 0.3345 T12: -0.0653 REMARK 3 T13: 0.0717 T23: -0.1624 REMARK 3 L TENSOR REMARK 3 L11: 1.7696 L22: 2.8633 REMARK 3 L33: 1.1056 L12: 0.4478 REMARK 3 L13: -0.5210 L23: 1.2037 REMARK 3 S TENSOR REMARK 3 S11: -0.2218 S12: 0.3703 S13: -0.4230 REMARK 3 S21: -0.6446 S22: 0.6319 S23: -0.8551 REMARK 3 S31: -0.3377 S32: 0.4862 S33: 0.0305 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7481 2.1677 75.7819 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.1134 REMARK 3 T33: 0.1805 T12: -0.0016 REMARK 3 T13: 0.0062 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 3.2907 L22: 3.9505 REMARK 3 L33: 4.4873 L12: 0.1588 REMARK 3 L13: -0.2751 L23: 0.7182 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: 0.0022 S13: -0.2902 REMARK 3 S21: 0.0256 S22: 0.1446 S23: 0.4470 REMARK 3 S31: -0.0047 S32: -0.2118 S33: -0.1007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.3637 -11.4237 75.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.2374 T22: 0.1710 REMARK 3 T33: 0.3556 T12: 0.0289 REMARK 3 T13: -0.0504 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 3.0588 L22: 3.9804 REMARK 3 L33: 2.6551 L12: 0.5655 REMARK 3 L13: -0.5368 L23: 0.7271 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: -0.3169 S13: -0.7268 REMARK 3 S21: 0.3703 S22: 0.1899 S23: -0.0711 REMARK 3 S31: 0.5664 S32: 0.1265 S33: 0.0034 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9570 8.5310 88.2280 REMARK 3 T TENSOR REMARK 3 T11: 0.2268 T22: 0.2301 REMARK 3 T33: 0.2420 T12: 0.0307 REMARK 3 T13: 0.0941 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 3.4311 L22: 2.2539 REMARK 3 L33: 1.6558 L12: -0.3817 REMARK 3 L13: -0.2433 L23: 0.8635 REMARK 3 S TENSOR REMARK 3 S11: -0.2435 S12: -0.4150 S13: -0.5022 REMARK 3 S21: 0.4147 S22: -0.0511 S23: 0.5288 REMARK 3 S31: 0.2083 S32: -0.2751 S33: 0.0200 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.7943 8.0787 95.1147 REMARK 3 T TENSOR REMARK 3 T11: 0.3958 T22: 0.4491 REMARK 3 T33: 0.1884 T12: 0.1015 REMARK 3 T13: -0.0713 T23: 0.0987 REMARK 3 L TENSOR REMARK 3 L11: 0.6293 L22: 2.8504 REMARK 3 L33: 1.7696 L12: 0.5221 REMARK 3 L13: -0.0467 L23: -1.6386 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.6874 S13: -0.2442 REMARK 3 S21: 0.3963 S22: -0.0977 S23: -0.4412 REMARK 3 S31: 0.2449 S32: 0.3890 S33: 0.3767 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1939 20.8473 93.0889 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.3233 REMARK 3 T33: 0.0692 T12: 0.0712 REMARK 3 T13: 0.0167 T23: -0.0927 REMARK 3 L TENSOR REMARK 3 L11: 2.2770 L22: 2.2922 REMARK 3 L33: 2.2085 L12: 0.5799 REMARK 3 L13: -0.1083 L23: 0.7925 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: -0.8712 S13: 0.6993 REMARK 3 S21: 0.5196 S22: 0.0329 S23: 0.1266 REMARK 3 S31: -0.1315 S32: 0.2646 S33: -0.0351 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND RESID 1 REMARK 3 ORIGIN FOR THE GROUP (A): 49.9940 3.7031 97.9340 REMARK 3 T TENSOR REMARK 3 T11: 0.5294 T22: 0.7659 REMARK 3 T33: 0.4029 T12: 0.1265 REMARK 3 T13: 0.0606 T23: 0.2063 REMARK 3 L TENSOR REMARK 3 L11: 3.8780 L22: 9.3770 REMARK 3 L33: 8.6568 L12: 1.3597 REMARK 3 L13: 0.7046 L23: -1.3719 REMARK 3 S TENSOR REMARK 3 S11: 0.8638 S12: -0.4667 S13: -0.6212 REMARK 3 S21: 0.7477 S22: -0.2207 S23: 0.4719 REMARK 3 S31: 0.7029 S32: -0.5301 S33: -0.5799 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND RESID 2 REMARK 3 ORIGIN FOR THE GROUP (A): 64.3287 -3.8724 79.1578 REMARK 3 T TENSOR REMARK 3 T11: 0.3571 T22: 0.6622 REMARK 3 T33: 0.7661 T12: -0.0028 REMARK 3 T13: 0.0606 T23: 0.1836 REMARK 3 L TENSOR REMARK 3 L11: 9.1353 L22: 7.0034 REMARK 3 L33: 9.3082 L12: 6.3422 REMARK 3 L13: 8.3878 L23: 7.8660 REMARK 3 S TENSOR REMARK 3 S11: 0.2565 S12: 0.7022 S13: -0.9478 REMARK 3 S21: 0.5512 S22: 0.8845 S23: -0.1052 REMARK 3 S31: -0.5043 S32: 1.5289 S33: -0.9689 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'G' AND RESID 1 REMARK 3 ORIGIN FOR THE GROUP (A): 63.8256 3.1447 79.6377 REMARK 3 T TENSOR REMARK 3 T11: 0.3670 T22: 0.3702 REMARK 3 T33: 0.5965 T12: 0.1286 REMARK 3 T13: -0.1390 T23: -0.1468 REMARK 3 L TENSOR REMARK 3 L11: 4.6257 L22: 8.8279 REMARK 3 L33: 7.4308 L12: 3.5240 REMARK 3 L13: 1.7886 L23: -0.8187 REMARK 3 S TENSOR REMARK 3 S11: -0.5458 S12: -0.7630 S13: -1.1843 REMARK 3 S21: 0.2783 S22: 0.4229 S23: -1.6250 REMARK 3 S31: -0.4634 S32: 0.3252 S33: 0.0483 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'G' AND RESID 2 REMARK 3 ORIGIN FOR THE GROUP (A): 46.8028 0.1231 92.7019 REMARK 3 T TENSOR REMARK 3 T11: 1.0260 T22: 0.5585 REMARK 3 T33: -0.1916 T12: 0.2895 REMARK 3 T13: 0.6147 T23: 0.5786 REMARK 3 L TENSOR REMARK 3 L11: 1.4613 L22: 1.7484 REMARK 3 L33: 1.8861 L12: 1.4014 REMARK 3 L13: 1.4428 L23: 0.9617 REMARK 3 S TENSOR REMARK 3 S11: 0.0815 S12: -0.9234 S13: -0.3009 REMARK 3 S21: 0.7251 S22: -0.4695 S23: -0.0561 REMARK 3 S31: 0.2561 S32: -0.0430 S33: -0.0167 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 37.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06436 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 1.04800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN DILUTED TO 10MG/ML IN 15MM REMARK 280 GSH, 50MM TRIS PH 7.5, 50MM NACL, 25MM MGCL2, 5MM DTT, 1MM EDTA REMARK 280 WELL BUFFER 22% PEG 6K, 1% 1,4 DIOXANE, 10MM DTT, 5% GLYCEROL, REMARK 280 50MM TRIS PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.99850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 ASN A 117 CG OD1 ND2 REMARK 470 TYR A 122 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 179 CE NZ REMARK 470 ARG A 193 NE CZ NH1 NH2 REMARK 470 GLN B 36 CG CD OE1 NE2 REMARK 470 LYS B 43 CE NZ REMARK 470 LYS B 107 CD CE NZ REMARK 470 GLU B 118 CD OE1 OE2 REMARK 470 LYS B 179 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 37 O HOH A 301 2.18 REMARK 500 OE2 GLU A 84 O HOH A 302 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 63 109.19 73.61 REMARK 500 ASP B 57 -117.76 60.23 REMARK 500 GLN B 63 109.77 71.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 76 O REMARK 620 2 SER A 145 OG 127.4 REMARK 620 3 VAL A 146 O 79.6 109.4 REMARK 620 4 HOH A 320 O 62.4 80.6 54.8 REMARK 620 5 HOH A 370 O 154.4 68.7 116.3 143.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 166 O REMARK 620 2 HOH A 335 O 100.7 REMARK 620 3 HOH A 391 O 88.6 91.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 309 O REMARK 620 2 HOH A 326 O 93.9 REMARK 620 3 HOH A 376 O 94.0 94.8 REMARK 620 4 HOH B 325 O 94.8 170.1 89.3 REMARK 620 5 HOH B 366 O 80.9 92.1 171.7 84.7 REMARK 620 6 HOH B 384 O 174.5 84.6 91.4 86.3 93.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZTC RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN WITH ANOTHER LIGAND DBREF 7JR6 A 1 199 UNP O60760 HPGDS_HUMAN 1 199 DBREF 7JR6 B 1 199 UNP O60760 HPGDS_HUMAN 1 199 SEQADV 7JR6 GLY A 0 UNP O60760 EXPRESSION TAG SEQADV 7JR6 GLY B 0 UNP O60760 EXPRESSION TAG SEQRES 1 A 200 GLY MET PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG SEQRES 2 A 200 GLY ARG ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU SEQRES 3 A 200 ASP ILE GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP SEQRES 4 A 200 TRP PRO GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE SEQRES 5 A 200 PRO ILE LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER SEQRES 6 A 200 LEU ALA ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU SEQRES 7 A 200 ALA GLY ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA SEQRES 8 A 200 ILE VAL ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO SEQRES 9 A 200 TRP ALA GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE SEQRES 10 A 200 ASN GLU LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN SEQRES 11 A 200 ASP LEU ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE SEQRES 12 A 200 GLY ASN SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE SEQRES 13 A 200 CYS SER THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU SEQRES 14 A 200 ASP ASN HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL SEQRES 15 A 200 GLN ALA ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG SEQRES 16 A 200 PRO GLN THR LYS LEU SEQRES 1 B 200 GLY MET PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG SEQRES 2 B 200 GLY ARG ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU SEQRES 3 B 200 ASP ILE GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP SEQRES 4 B 200 TRP PRO GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE SEQRES 5 B 200 PRO ILE LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER SEQRES 6 B 200 LEU ALA ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU SEQRES 7 B 200 ALA GLY ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA SEQRES 8 B 200 ILE VAL ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO SEQRES 9 B 200 TRP ALA GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE SEQRES 10 B 200 ASN GLU LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN SEQRES 11 B 200 ASP LEU ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE SEQRES 12 B 200 GLY ASN SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE SEQRES 13 B 200 CYS SER THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU SEQRES 14 B 200 ASP ASN HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL SEQRES 15 B 200 GLN ALA ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG SEQRES 16 B 200 PRO GLN THR LYS LEU HET GSH A 201 35 HET VH4 A 202 58 HET MG A 203 1 HET NA A 204 1 HET NA A 205 1 HET GSH B 201 35 HET VH4 B 202 58 HET MG B 203 1 HETNAM GSH GLUTATHIONE HETNAM VH4 1-(3-FLUOROPHENYL)-N-[TRANS-4-(2-HYDROXYPROPAN-2-YL) HETNAM 2 VH4 CYCLOHEXYL]-1,4,6,7-TETRAHYDRO-5H-PYRAZOLO[4,3- HETNAM 3 VH4 C]PYRIDINE-5-CARBOXAMIDE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 3 GSH 2(C10 H17 N3 O6 S) FORMUL 4 VH4 2(C22 H29 F N4 O2) FORMUL 5 MG 2(MG 2+) FORMUL 6 NA 2(NA 1+) FORMUL 11 HOH *369(H2 O) HELIX 1 AA1 ALA A 15 LEU A 25 1 11 HELIX 2 AA2 GLU A 35 ALA A 37 5 3 HELIX 3 AA3 ASP A 38 SER A 44 1 7 HELIX 4 AA4 GLN A 63 LYS A 73 1 11 HELIX 5 AA5 THR A 81 PHE A 102 1 22 HELIX 6 AA6 LYS A 108 ASN A 123 1 16 HELIX 7 AA7 ASN A 123 GLY A 136 1 14 HELIX 8 AA8 THR A 147 LYS A 164 1 18 HELIX 9 AA9 HIS A 171 ILE A 184 1 14 HELIX 10 AB1 ILE A 184 ARG A 194 1 11 HELIX 11 AB2 ALA B 15 ASP B 26 1 12 HELIX 12 AB3 GLU B 35 ALA B 37 5 3 HELIX 13 AB4 ASP B 38 SER B 44 1 7 HELIX 14 AB5 GLN B 63 LYS B 73 1 11 HELIX 15 AB6 THR B 81 PHE B 102 1 22 HELIX 16 AB7 LYS B 108 TYR B 122 1 15 HELIX 17 AB8 TYR B 122 GLY B 136 1 15 HELIX 18 AB9 THR B 147 LYS B 164 1 18 HELIX 19 AC1 HIS B 171 ILE B 184 1 14 HELIX 20 AC2 ILE B 184 ARG B 194 1 11 SHEET 1 AA1 4 GLU A 30 ILE A 34 0 SHEET 2 AA1 4 TYR A 4 PHE A 9 1 N LEU A 6 O GLU A 30 SHEET 3 AA1 4 ILE A 53 VAL A 56 -1 O GLU A 55 N LYS A 5 SHEET 4 AA1 4 LEU A 59 HIS A 62 -1 O LEU A 59 N VAL A 56 SHEET 1 AA2 4 GLU B 30 ILE B 34 0 SHEET 2 AA2 4 TYR B 4 PHE B 9 1 N TYR B 8 O ILE B 34 SHEET 3 AA2 4 ILE B 53 VAL B 56 -1 O GLU B 55 N LYS B 5 SHEET 4 AA2 4 LEU B 59 HIS B 62 -1 O LEU B 59 N VAL B 56 LINK O ASP A 76 NA NA A 204 1555 1555 2.55 LINK OG SER A 145 NA NA A 204 1555 1555 2.43 LINK O VAL A 146 NA NA A 204 1555 1555 2.84 LINK O ASP A 166 NA NA A 205 1555 1555 2.74 LINK MG MG A 203 O HOH A 309 1555 1555 2.23 LINK MG MG A 203 O HOH A 326 1555 1555 2.03 LINK MG MG A 203 O HOH A 376 1555 1555 1.99 LINK MG MG A 203 O HOH B 325 1555 1555 2.19 LINK MG MG A 203 O HOH B 366 1555 1555 2.24 LINK MG MG A 203 O HOH B 384 1555 1555 2.02 LINK NA NA A 204 O HOH A 320 1555 1555 2.80 LINK NA NA A 204 O HOH A 370 1555 1555 3.08 LINK NA NA A 205 O HOH A 335 1555 1555 2.58 LINK NA NA A 205 O HOH A 391 1555 1555 2.92 LINK MG MG B 203 O HOH B 460 1555 1555 2.20 CISPEP 1 ILE A 51 PRO A 52 0 8.07 CISPEP 2 ILE B 51 PRO B 52 0 7.56 CRYST1 48.872 67.997 69.096 90.00 96.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020462 0.000000 0.002451 0.00000 SCALE2 0.000000 0.014707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014576 0.00000