HEADER BIOSYNTHETIC PROTEIN 17-AUG-20 7JTJ TITLE CRYSTAL STRUCTURE OF THE SECOND HETEROCYCLIZATION DOMAIN OF TITLE 2 YERSINIABACTIN SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRP2 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HETEROCYCLIZATION DOMAIN; COMPND 5 SYNONYM: YBT PEPTIDE SYNTHETASE HMWP2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: IRP2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS HETEROCYCLIZATION DOMAIN, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.XIA,A.D.GNANN,D.P.DOWLING REVDAT 3 18-OCT-23 7JTJ 1 REMARK REVDAT 2 02-NOV-22 7JTJ 1 JRNL REVDAT 1 06-OCT-21 7JTJ 0 JRNL AUTH A.D.GNANN,Y.XIA,J.SOULE,C.BARTHELEMY,J.S.MAWANI,S.N.MUSOKE, JRNL AUTH 2 B.M.CASTELLANO,E.J.BRIGNOLE,D.P.FRUEH,D.P.DOWLING JRNL TITL HIGH-RESOLUTION STRUCTURES OF A SIDEROPHORE-PRODUCING JRNL TITL 2 CYCLIZATION DOMAIN FROM YERSINIA PESTIS OFFER A REFINED JRNL TITL 3 PROPOSAL OF SUBSTRATE BINDING. JRNL REF J.BIOL.CHEM. V. 298 02454 2022 JRNL REFN ESSN 1083-351X JRNL PMID 36063993 JRNL DOI 10.1016/J.JBC.2022.102454 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 41875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.8000 - 4.7900 0.99 2881 150 0.1660 0.1779 REMARK 3 2 4.7900 - 3.8000 0.99 2734 143 0.1409 0.1593 REMARK 3 3 3.8000 - 3.3200 1.00 2695 140 0.1627 0.2032 REMARK 3 4 3.3200 - 3.0200 0.99 2674 139 0.1922 0.2304 REMARK 3 5 3.0200 - 2.8000 0.98 2632 138 0.2052 0.2563 REMARK 3 6 2.8000 - 2.6400 0.99 2643 137 0.2032 0.2768 REMARK 3 7 2.6400 - 2.5100 0.99 2640 137 0.2000 0.2275 REMARK 3 8 2.5100 - 2.4000 0.99 2628 137 0.1950 0.2386 REMARK 3 9 2.4000 - 2.3100 0.99 2628 137 0.1851 0.2477 REMARK 3 10 2.3100 - 2.2300 0.99 2619 137 0.1860 0.2429 REMARK 3 11 2.2300 - 2.1600 1.00 2635 137 0.1945 0.2389 REMARK 3 12 2.1600 - 2.0900 1.00 2641 138 0.1875 0.2407 REMARK 3 13 2.0900 - 2.0400 1.00 2624 137 0.2070 0.2377 REMARK 3 14 2.0400 - 1.9900 0.99 2602 135 0.2241 0.2541 REMARK 3 15 1.9900 - 1.9400 0.96 2525 132 0.2497 0.3076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.196 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3589 REMARK 3 ANGLE : 0.891 4917 REMARK 3 CHIRALITY : 0.082 533 REMARK 3 PLANARITY : 0.006 648 REMARK 3 DIHEDRAL : 17.753 1319 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1483:1532) REMARK 3 ORIGIN FOR THE GROUP (A): -63.1432 4.1783 4.7438 REMARK 3 T TENSOR REMARK 3 T11: 0.3765 T22: 0.1841 REMARK 3 T33: 0.2888 T12: 0.0028 REMARK 3 T13: 0.0665 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 0.7436 L22: 1.4156 REMARK 3 L33: 1.1490 L12: -0.1989 REMARK 3 L13: 0.1737 L23: 0.1227 REMARK 3 S TENSOR REMARK 3 S11: 0.0765 S12: 0.1361 S13: 0.1601 REMARK 3 S21: -0.1907 S22: -0.0037 S23: -0.1665 REMARK 3 S31: -0.1444 S32: 0.0398 S33: -0.0602 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 1533:1680) REMARK 3 ORIGIN FOR THE GROUP (A): -66.4431 2.7267 12.5692 REMARK 3 T TENSOR REMARK 3 T11: 0.2681 T22: 0.1136 REMARK 3 T33: 0.2118 T12: 0.0168 REMARK 3 T13: -0.0138 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 1.8951 L22: 1.1496 REMARK 3 L33: 1.6052 L12: -0.3410 REMARK 3 L13: -0.9071 L23: 0.5530 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: 0.0445 S13: 0.0232 REMARK 3 S21: -0.1473 S22: -0.0412 S23: 0.0161 REMARK 3 S31: -0.0988 S32: -0.0633 S33: 0.1066 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 1681:1772) REMARK 3 ORIGIN FOR THE GROUP (A): -54.9666 -14.6092 3.6012 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.1819 REMARK 3 T33: 0.1415 T12: -0.0264 REMARK 3 T13: -0.0050 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.7981 L22: 1.6177 REMARK 3 L33: 1.0967 L12: -0.2271 REMARK 3 L13: -0.0575 L23: 0.0035 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: 0.1012 S13: 0.0298 REMARK 3 S21: -0.2028 S22: 0.0396 S23: -0.0455 REMARK 3 S31: -0.0388 S32: 0.0328 S33: -0.0574 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 1773:1802) REMARK 3 ORIGIN FOR THE GROUP (A): -43.8789 -17.6716 -2.2895 REMARK 3 T TENSOR REMARK 3 T11: 0.2574 T22: 0.3990 REMARK 3 T33: 0.2277 T12: -0.0164 REMARK 3 T13: 0.0541 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 3.6048 L22: 2.7296 REMARK 3 L33: 3.7713 L12: -0.2903 REMARK 3 L13: 0.6871 L23: -1.3325 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: 0.2813 S13: -0.1847 REMARK 3 S21: -0.3839 S22: -0.1652 S23: -0.4144 REMARK 3 S31: 0.0809 S32: 0.8565 S33: 0.0881 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 1803:1847) REMARK 3 ORIGIN FOR THE GROUP (A): -54.4774 -7.3452 1.0392 REMARK 3 T TENSOR REMARK 3 T11: 0.4206 T22: 0.2011 REMARK 3 T33: 0.2769 T12: -0.0656 REMARK 3 T13: -0.0079 T23: 0.0745 REMARK 3 L TENSOR REMARK 3 L11: 1.9219 L22: 1.1597 REMARK 3 L33: 0.4489 L12: -0.1371 REMARK 3 L13: -0.3726 L23: 0.6875 REMARK 3 S TENSOR REMARK 3 S11: -0.1051 S12: 0.0966 S13: 0.0574 REMARK 3 S21: -0.1659 S22: 0.0926 S23: -0.0106 REMARK 3 S31: -0.4619 S32: 0.5511 S33: 0.0235 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 1848:1886) REMARK 3 ORIGIN FOR THE GROUP (A): -64.1483 -14.5795 6.7518 REMARK 3 T TENSOR REMARK 3 T11: 0.3138 T22: 0.1628 REMARK 3 T33: 0.2299 T12: 0.0161 REMARK 3 T13: -0.0231 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.9878 L22: 1.0735 REMARK 3 L33: 0.6376 L12: 0.0179 REMARK 3 L13: -0.7675 L23: 0.1995 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.0449 S13: -0.0272 REMARK 3 S21: -0.0306 S22: 0.1357 S23: 0.1373 REMARK 3 S31: -0.1223 S32: -0.1741 S33: -0.1764 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 1887:1910) REMARK 3 ORIGIN FOR THE GROUP (A): -55.3770 -29.2423 7.3574 REMARK 3 T TENSOR REMARK 3 T11: 0.2779 T22: 0.1679 REMARK 3 T33: 0.2177 T12: 0.0195 REMARK 3 T13: -0.0222 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 2.0066 L22: 3.2729 REMARK 3 L33: 3.7824 L12: 1.1906 REMARK 3 L13: 0.8882 L23: -0.6224 REMARK 3 S TENSOR REMARK 3 S11: 0.1131 S12: 0.0933 S13: -0.0986 REMARK 3 S21: -0.0320 S22: -0.0380 S23: -0.3121 REMARK 3 S31: 0.3712 S32: 0.2324 S33: -0.1377 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41892 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 30.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 16.44 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.42 REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5T7Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, PEG 3350, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.03500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.64500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.01750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.64500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.05250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.64500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.64500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.01750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.64500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.64500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.05250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.03500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1459 REMARK 465 GLY A 1460 REMARK 465 SER A 1461 REMARK 465 SER A 1462 REMARK 465 HIS A 1463 REMARK 465 HIS A 1464 REMARK 465 HIS A 1465 REMARK 465 HIS A 1466 REMARK 465 HIS A 1467 REMARK 465 HIS A 1468 REMARK 465 SER A 1469 REMARK 465 SER A 1470 REMARK 465 GLY A 1471 REMARK 465 LEU A 1472 REMARK 465 VAL A 1473 REMARK 465 PRO A 1474 REMARK 465 ARG A 1475 REMARK 465 GLY A 1476 REMARK 465 SER A 1477 REMARK 465 HIS A 1478 REMARK 465 MET A 1479 REMARK 465 PRO A 1480 REMARK 465 VAL A 1481 REMARK 465 GLU A 1482 REMARK 465 GLN A 1664 REMARK 465 SER A 1665 REMARK 465 PRO A 1666 REMARK 465 ASN A 1667 REMARK 465 PRO A 1668 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A1564 CG CD OE1 NE2 REMARK 470 GLU A1695 CG CD OE1 OE2 REMARK 470 GLN A1816 CG CD OE1 NE2 REMARK 470 ARG A1843 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1844 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A1600 51.83 -99.46 REMARK 500 ASN A1839 60.37 -110.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2455 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2000 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A1520 O REMARK 620 2 HIS A1521 O 78.9 REMARK 620 3 ASN A1621 OD1 82.3 101.8 REMARK 620 4 GLN A1855 O 94.5 90.9 166.0 REMARK 620 5 HOH A2242 O 101.5 172.8 85.4 81.8 REMARK 620 6 HOH A2357 O 159.7 117.7 82.8 96.6 63.6 REMARK 620 N 1 2 3 4 5 DBREF 7JTJ A 1480 1910 UNP Q9Z399 Q9Z399_YERPE 1486 1916 SEQADV 7JTJ MET A 1459 UNP Q9Z399 INITIATING METHIONINE SEQADV 7JTJ GLY A 1460 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ SER A 1461 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ SER A 1462 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ HIS A 1463 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ HIS A 1464 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ HIS A 1465 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ HIS A 1466 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ HIS A 1467 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ HIS A 1468 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ SER A 1469 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ SER A 1470 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ GLY A 1471 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ LEU A 1472 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ VAL A 1473 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ PRO A 1474 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ ARG A 1475 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ GLY A 1476 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ SER A 1477 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ HIS A 1478 UNP Q9Z399 EXPRESSION TAG SEQADV 7JTJ MET A 1479 UNP Q9Z399 EXPRESSION TAG SEQRES 1 A 452 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 452 LEU VAL PRO ARG GLY SER HIS MET PRO VAL GLU GLN PRO SEQRES 3 A 452 PHE VAL HIS SER PRO GLU ASP ARG TYR GLN PRO PHE ALA SEQRES 4 A 452 LEU THR ASP VAL GLN GLN ALA TYR LEU VAL GLY ARG GLN SEQRES 5 A 452 PRO GLY PHE ALA LEU GLY GLY VAL GLY SER HIS PHE PHE SEQRES 6 A 452 VAL GLU PHE GLU ILE ALA ASP LEU ASP LEU THR ARG LEU SEQRES 7 A 452 GLU THR VAL TRP ASN ARG LEU ILE ALA ARG HIS ASP MET SEQRES 8 A 452 LEU ARG ALA ILE VAL ARG ASP GLY GLN GLN GLN VAL LEU SEQRES 9 A 452 GLU GLN THR PRO PRO TRP VAL ILE PRO ALA HIS THR LEU SEQRES 10 A 452 HIS THR PRO GLU GLU ALA LEU ARG VAL ARG GLU LYS LEU SEQRES 11 A 452 ALA HIS GLN VAL LEU ASN PRO GLU VAL TRP PRO VAL PHE SEQRES 12 A 452 ASP LEU GLN VAL GLY TYR VAL ASP GLY MET PRO ALA ARG SEQRES 13 A 452 LEU TRP LEU CYS LEU ASP ASN LEU LEU LEU ASP GLY LEU SEQRES 14 A 452 SER MET GLN ILE LEU LEU ALA GLU LEU GLU HIS GLY TYR SEQRES 15 A 452 ARG TYR PRO GLN GLN LEU LEU PRO PRO LEU PRO VAL THR SEQRES 16 A 452 PHE ARG ASP TYR LEU GLN GLN PRO SER LEU GLN SER PRO SEQRES 17 A 452 ASN PRO ASP SER LEU ALA TRP TRP GLN ALA GLN LEU ASP SEQRES 18 A 452 ASP ILE PRO PRO ALA PRO ALA LEU PRO LEU ARG CYS LEU SEQRES 19 A 452 PRO GLN GLU VAL GLU THR PRO ARG PHE ALA ARG LEU ASN SEQRES 20 A 452 GLY ALA LEU ASP SER THR ARG TRP HIS ARG LEU LYS LYS SEQRES 21 A 452 ARG ALA ALA ASP ALA HIS LEU THR PRO SER ALA VAL LEU SEQRES 22 A 452 LEU SER VAL TRP SER THR VAL LEU SER ALA TRP SER ALA SEQRES 23 A 452 GLN PRO GLU PHE THR LEU ASN LEU THR LEU PHE ASP ARG SEQRES 24 A 452 ARG PRO LEU HIS PRO GLN ILE ASN GLN ILE LEU GLY ASP SEQRES 25 A 452 PHE THR SER LEU MET LEU LEU SER TRP HIS PRO GLY GLU SEQRES 26 A 452 SER TRP LEU HIS SER ALA GLN SER LEU GLN GLN ARG LEU SEQRES 27 A 452 SER GLN ASN LEU ASN HIS ARG ASP VAL SER ALA ILE ARG SEQRES 28 A 452 VAL MET ARG GLN LEU ALA GLN ARG GLN ASN VAL PRO ALA SEQRES 29 A 452 VAL PRO MET PRO VAL VAL PHE THR SER ALA LEU GLY PHE SEQRES 30 A 452 GLU GLN ASP ASN PHE LEU ALA ARG ARG ASN LEU LEU LYS SEQRES 31 A 452 PRO VAL TRP GLY ILE SER GLN THR PRO GLN VAL TRP LEU SEQRES 32 A 452 ASP HIS GLN ILE TYR GLU SER GLU GLY GLU LEU ARG PHE SEQRES 33 A 452 ASN TRP ASP PHE VAL ALA ALA LEU PHE PRO ALA GLY GLN SEQRES 34 A 452 VAL GLU ARG GLN PHE GLU GLN TYR CYS ALA LEU LEU ASN SEQRES 35 A 452 ARG MET ALA GLU ASP GLU SER GLY TRP GLN HET NA A2000 1 HET PG0 A2001 8 HETNAM NA SODIUM ION HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETSYN PG0 PEG 6000 FORMUL 2 NA NA 1+ FORMUL 3 PG0 C5 H12 O3 FORMUL 4 HOH *355(H2 O) HELIX 1 AA1 SER A 1488 ARG A 1492 5 5 HELIX 2 AA2 THR A 1499 GLY A 1508 1 10 HELIX 3 AA3 ASP A 1532 HIS A 1547 1 16 HELIX 4 AA4 ASP A 1548 LEU A 1550 5 3 HELIX 5 AA5 THR A 1577 HIS A 1590 1 14 HELIX 6 AA6 ASP A 1625 TYR A 1642 1 18 HELIX 7 AA7 THR A 1653 GLN A 1659 1 7 HELIX 8 AA8 SER A 1670 GLN A 1677 1 8 HELIX 9 AA9 LEU A 1678 ILE A 1681 5 4 HELIX 10 AB1 LEU A 1692 VAL A 1696 5 5 HELIX 11 AB2 ASP A 1709 ALA A 1723 1 15 HELIX 12 AB3 THR A 1726 SER A 1743 1 18 HELIX 13 AB4 GLN A 1763 ILE A 1767 5 5 HELIX 14 AB5 SER A 1784 ASN A 1801 1 18 HELIX 15 AB6 SER A 1806 ASN A 1819 1 14 HELIX 16 AB7 ALA A 1881 PHE A 1883 5 3 HELIX 17 AB8 GLY A 1886 ASP A 1905 1 20 HELIX 18 AB9 GLU A 1906 GLN A 1910 5 5 SHEET 1 AA1 5 ALA A1572 LEU A1575 0 SHEET 2 AA1 5 PHE A1601 VAL A1608 1 O TYR A1607 N LEU A1575 SHEET 3 AA1 5 ALA A1613 ASP A1620 -1 O ARG A1614 N GLY A1606 SHEET 4 AA1 5 HIS A1521 ILE A1528 -1 N PHE A1522 O LEU A1619 SHEET 5 AA1 5 LYS A1848 SER A1854 -1 O TRP A1851 N GLU A1525 SHEET 1 AA2 2 ALA A1552 ARG A1555 0 SHEET 2 AA2 2 GLN A1558 VAL A1561 -1 O GLN A1558 N ARG A1555 SHEET 1 AA3 6 PHE A1701 LEU A1708 0 SHEET 2 AA3 6 GLU A1871 VAL A1879 -1 O PHE A1874 N GLY A1706 SHEET 3 AA3 6 LEU A1861 SER A1868 -1 N TYR A1866 O ARG A1873 SHEET 4 AA3 6 VAL A1827 SER A1831 1 N THR A1830 O HIS A1863 SHEET 5 AA3 6 PHE A1748 LEU A1754 1 N THR A1753 O PHE A1829 SHEET 6 AA3 6 SER A1773 TRP A1779 -1 O TRP A1779 N PHE A1748 LINK O SER A1520 NA NA A2000 1555 1555 2.57 LINK O HIS A1521 NA NA A2000 1555 1555 2.75 LINK OD1 ASN A1621 NA NA A2000 1555 1555 2.30 LINK O GLN A1855 NA NA A2000 1555 1555 2.28 LINK NA NA A2000 O HOH A2242 1555 1555 2.44 LINK NA NA A2000 O HOH A2357 1555 1555 2.83 CISPEP 1 TRP A 1598 PRO A 1599 0 1.12 CRYST1 89.290 89.290 140.070 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011199 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007139 0.00000