data_7JU2 # _entry.id 7JU2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.346 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7JU2 WWPDB D_1000251088 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7JU2 _pdbx_database_status.recvd_initial_deposition_date 2020-08-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gerak, C.A.N.' 1 0000-0002-5329-9443 'Kolesnikov, M.' 2 0000-0002-2219-9933 'Murphy, M.E.P.' 3 0000-0003-2589-0014 'McIntosh, L.P.' 4 0000-0002-6749-7272 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 296 _citation.language ? _citation.page_first 100284 _citation.page_last 100284 _citation.title 'Biophysical characterization of the ETV6 PNT domain polymerization interfaces.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jbc.2021.100284 _citation.pdbx_database_id_PubMed 33450226 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gerak, C.A.N.' 1 ? primary 'Cho, S.Y.' 2 ? primary 'Kolesnikov, M.' 3 ? primary 'Okon, M.' 4 ? primary 'Murphy, M.E.P.' 5 ? primary 'Sessions, R.B.' 6 ? primary 'Roberge, M.' 7 ? primary 'McIntosh, L.P.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7JU2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 59.860 _cell.length_a_esd ? _cell.length_b 59.860 _cell.length_b_esd ? _cell.length_c 169.380 _cell.length_c_esd ? _cell.volume 525613.105 _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7JU2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcription factor ETV6' 10087.406 2 ? A93D,V112E 'PNT domain' ? 2 non-polymer syn 'FORMIC ACID' 46.025 2 ? ? ? ? 3 water nat water 18.015 105 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ETS translocation variant 6,ETS-related protein Tel1,Tel' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEEDSIRLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKDLLLLTKEDFRYRSPHSGDELYELLQHILK QRK ; _entity_poly.pdbx_seq_one_letter_code_can ;MEEDSIRLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKDLLLLTKEDFRYRSPHSGDELYELLQHILK QRK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 GLU n 1 4 ASP n 1 5 SER n 1 6 ILE n 1 7 ARG n 1 8 LEU n 1 9 PRO n 1 10 ALA n 1 11 HIS n 1 12 LEU n 1 13 ARG n 1 14 LEU n 1 15 GLN n 1 16 PRO n 1 17 ILE n 1 18 TYR n 1 19 TRP n 1 20 SER n 1 21 ARG n 1 22 ASP n 1 23 ASP n 1 24 VAL n 1 25 ALA n 1 26 GLN n 1 27 TRP n 1 28 LEU n 1 29 LYS n 1 30 TRP n 1 31 ALA n 1 32 GLU n 1 33 ASN n 1 34 GLU n 1 35 PHE n 1 36 SER n 1 37 LEU n 1 38 ARG n 1 39 PRO n 1 40 ILE n 1 41 ASP n 1 42 SER n 1 43 ASN n 1 44 THR n 1 45 PHE n 1 46 GLU n 1 47 MET n 1 48 ASN n 1 49 GLY n 1 50 LYS n 1 51 ASP n 1 52 LEU n 1 53 LEU n 1 54 LEU n 1 55 LEU n 1 56 THR n 1 57 LYS n 1 58 GLU n 1 59 ASP n 1 60 PHE n 1 61 ARG n 1 62 TYR n 1 63 ARG n 1 64 SER n 1 65 PRO n 1 66 HIS n 1 67 SER n 1 68 GLY n 1 69 ASP n 1 70 GLU n 1 71 LEU n 1 72 TYR n 1 73 GLU n 1 74 LEU n 1 75 LEU n 1 76 GLN n 1 77 HIS n 1 78 ILE n 1 79 LEU n 1 80 LYS n 1 81 GLN n 1 82 ARG n 1 83 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 83 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ETV6, TEL, TEL1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ETV6_HUMAN _struct_ref.pdbx_db_accession P41212 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEEDSIRLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDVLYELLQHILK QRK ; _struct_ref.pdbx_align_begin 43 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7JU2 A 1 ? 83 ? P41212 43 ? 125 ? 11 93 2 1 7JU2 B 1 ? 83 ? P41212 43 ? 125 ? 11 93 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7JU2 ASP A 51 ? UNP P41212 ALA 93 'engineered mutation' 61 1 1 7JU2 GLU A 70 ? UNP P41212 VAL 112 'engineered mutation' 80 2 2 7JU2 ASP B 51 ? UNP P41212 ALA 93 'engineered mutation' 61 3 2 7JU2 GLU B 70 ? UNP P41212 VAL 112 'engineered mutation' 80 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7JU2 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298.15 _exptl_crystal_grow.temp_details 'Room Temperature' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.8 M Sodium Acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-08-31 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'CLSI BEAMLINE 08B1-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 08B1-1 _diffrn_source.pdbx_synchrotron_site CLSI # _reflns.B_iso_Wilson_estimate 30.232 _reflns.entry_id 7JU2 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 44.2145476704 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16167 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 22.966 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 28.240 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.063 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.077 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.850 1.900 ? 2.790 ? ? ? ? 1150 100.000 ? ? ? ? 1.266 ? ? ? ? ? ? ? ? 23.636 ? ? ? ? 1.293 ? ? 1 1 0.901 ? ? 1.900 1.950 ? 4.200 ? ? ? ? 1124 99.900 ? ? ? ? 0.878 ? ? ? ? ? ? ? ? 23.591 ? ? ? ? 0.897 ? ? 2 1 0.937 ? ? 1.950 2.010 ? 5.410 ? ? ? ? 1112 100.000 ? ? ? ? 0.672 ? ? ? ? ? ? ? ? 23.637 ? ? ? ? 0.686 ? ? 3 1 0.956 ? ? 2.010 2.070 ? 7.220 ? ? ? ? 1077 100.000 ? ? ? ? 0.507 ? ? ? ? ? ? ? ? 23.641 ? ? ? ? 0.518 ? ? 4 1 0.977 ? ? 2.070 2.140 ? 9.480 ? ? ? ? 1056 100.000 ? ? ? ? 0.400 ? ? ? ? ? ? ? ? 23.493 ? ? ? ? 0.408 ? ? 5 1 0.982 ? ? 2.140 2.210 ? 12.410 ? ? ? ? 997 100.000 ? ? ? ? 0.295 ? ? ? ? ? ? ? ? 23.659 ? ? ? ? 0.302 ? ? 6 1 0.991 ? ? 2.210 2.290 ? 15.750 ? ? ? ? 984 100.000 ? ? ? ? 0.239 ? ? ? ? ? ? ? ? 23.308 ? ? ? ? 0.245 ? ? 7 1 0.995 ? ? 2.290 2.390 ? 19.640 ? ? ? ? 941 100.000 ? ? ? ? 0.187 ? ? ? ? ? ? ? ? 23.542 ? ? ? ? 0.191 ? ? 8 1 0.996 ? ? 2.390 2.490 ? 23.820 ? ? ? ? 919 100.000 ? ? ? ? 0.152 ? ? ? ? ? ? ? ? 23.258 ? ? ? ? 0.155 ? ? 9 1 0.998 ? ? 2.490 2.620 ? 27.550 ? ? ? ? 850 100.000 ? ? ? ? 0.128 ? ? ? ? ? ? ? ? 23.354 ? ? ? ? 0.131 ? ? 10 1 0.998 ? ? 2.620 2.760 ? 32.370 ? ? ? ? 837 100.000 ? ? ? ? 0.107 ? ? ? ? ? ? ? ? 23.151 ? ? ? ? 0.109 ? ? 11 1 0.999 ? ? 2.760 2.930 ? 38.130 ? ? ? ? 789 100.000 ? ? ? ? 0.085 ? ? ? ? ? ? ? ? 23.037 ? ? ? ? 0.087 ? ? 12 1 0.999 ? ? 2.930 3.130 ? 47.050 ? ? ? ? 746 100.000 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 22.863 ? ? ? ? 0.069 ? ? 13 1 0.999 ? ? 3.130 3.380 ? 56.840 ? ? ? ? 706 100.000 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 22.412 ? ? ? ? 0.055 ? ? 14 1 0.999 ? ? 3.380 3.700 ? 63.210 ? ? ? ? 663 100.000 ? ? ? ? 0.045 ? ? ? ? ? ? ? ? 22.134 ? ? ? ? 0.046 ? ? 15 1 1.000 ? ? 3.700 4.140 ? 71.310 ? ? ? ? 592 100.000 ? ? ? ? 0.036 ? ? ? ? ? ? ? ? 21.856 ? ? ? ? 0.037 ? ? 16 1 0.999 ? ? 4.140 4.780 ? 74.350 ? ? ? ? 537 100.000 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 21.439 ? ? ? ? 0.035 ? ? 17 1 1.000 ? ? 4.780 5.850 ? 70.930 ? ? ? ? 470 100.000 ? ? ? ? 0.034 ? ? ? ? ? ? ? ? 21.164 ? ? ? ? 0.035 ? ? 18 1 1.000 ? ? 5.850 8.270 ? 69.990 ? ? ? ? 379 100.000 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 20.227 ? ? ? ? 0.033 ? ? 19 1 1.000 ? ? 8.270 44.2145476704 ? 70.660 ? ? ? ? 238 99.200 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 16.647 ? ? ? ? 0.035 ? ? 20 1 0.998 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 33.7731599543 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7JU2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.85002183464 _refine.ls_d_res_low 44.2145476704 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16165 _refine.ls_number_reflns_R_free 809 _refine.ls_number_reflns_R_work 15356 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9814448293 _refine.ls_percent_reflns_R_free 5.00463965357 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.201380319359 _refine.ls_R_factor_R_free 0.233909689005 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.199621733223 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37855322817 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1lky _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.7786269711 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.178347916047 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.85002183464 _refine_hist.d_res_low 44.2145476704 _refine_hist.number_atoms_solvent 105 _refine_hist.number_atoms_total 1424 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1313 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.00553712784776 ? 1371 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.730679818931 ? 1856 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0438273535197 ? 192 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.00490252957529 ? 238 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 10.6213952537 ? 824 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.85002183464 1.9659 . . 131 2475 99.9616417338 . . . 0.284356552704 . 0.21953391453 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9659 2.1177 . . 131 2489 100.0 . . . 0.23602538123 . 0.201467003027 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1177 2.3308 . . 132 2513 100.0 . . . 0.230987327897 . 0.205070113614 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3308 2.6681 . . 133 2524 100.0 . . . 0.245806284238 . 0.20029345006 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6681 3.3613 . . 136 2590 100.0 . . . 0.248630315804 . 0.213610349044 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3613 44.2145476704 . . 146 2765 99.9656593407 . . . 0.218688126082 . 0.189193658194 . . . . . . . . . . . # _struct.entry_id 7JU2 _struct.title 'Crystal structure of the monomeric ETV6 PNT domain' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7JU2 _struct_keywords.text 'PNT domain, ETS transcription factor, chromosomal translocation, kinase fusion, ONCOPROTEIN' _struct_keywords.pdbx_keywords ONCOPROTEIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 9 ? LEU A 14 ? PRO A 19 LEU A 24 5 ? 6 HELX_P HELX_P2 AA2 GLN A 15 ? TRP A 19 ? GLN A 25 TRP A 29 5 ? 5 HELX_P HELX_P3 AA3 SER A 20 ? PHE A 35 ? SER A 30 PHE A 45 1 ? 16 HELX_P HELX_P4 AA4 ASP A 41 ? GLU A 46 ? ASP A 51 GLU A 56 5 ? 6 HELX_P HELX_P5 AA5 ASN A 48 ? LEU A 55 ? ASN A 58 LEU A 65 1 ? 8 HELX_P HELX_P6 AA6 THR A 56 ? SER A 64 ? THR A 66 SER A 74 1 ? 9 HELX_P HELX_P7 AA7 SER A 67 ? GLN A 81 ? SER A 77 GLN A 91 1 ? 15 HELX_P HELX_P8 AA8 PRO B 9 ? ARG B 13 ? PRO B 19 ARG B 23 5 ? 5 HELX_P HELX_P9 AA9 GLN B 15 ? TRP B 19 ? GLN B 25 TRP B 29 5 ? 5 HELX_P HELX_P10 AB1 SER B 20 ? SER B 36 ? SER B 30 SER B 46 1 ? 17 HELX_P HELX_P11 AB2 ASP B 41 ? GLU B 46 ? ASP B 51 GLU B 56 5 ? 6 HELX_P HELX_P12 AB3 ASN B 48 ? LEU B 53 ? ASN B 58 LEU B 63 1 ? 6 HELX_P HELX_P13 AB4 THR B 56 ? SER B 64 ? THR B 66 SER B 74 1 ? 9 HELX_P HELX_P14 AB5 SER B 67 ? GLN B 81 ? SER B 77 GLN B 91 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMT 101 ? 3 'binding site for residue FMT A 101' AC2 Software B FMT 101 ? 2 'binding site for residue FMT B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LEU A 53 ? LEU A 63 . ? 1_555 ? 2 AC1 3 GLN A 76 ? GLN A 86 . ? 1_555 ? 3 AC1 3 HOH E . ? HOH A 223 . ? 1_555 ? 4 AC2 2 HIS A 11 ? HIS A 21 . ? 5_545 ? 5 AC2 2 ARG B 13 ? ARG B 23 . ? 1_555 ? # _atom_sites.entry_id 7JU2 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.016706 _atom_sites.fract_transf_matrix[1][2] 0.009645 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019290 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005904 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 24.73122 6.32584 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 1.23737 29.19336 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 11 ? ? ? A . n A 1 2 GLU 2 12 ? ? ? A . n A 1 3 GLU 3 13 ? ? ? A . n A 1 4 ASP 4 14 ? ? ? A . n A 1 5 SER 5 15 15 SER SER A . n A 1 6 ILE 6 16 16 ILE ILE A . n A 1 7 ARG 7 17 17 ARG ARG A . n A 1 8 LEU 8 18 18 LEU LEU A . n A 1 9 PRO 9 19 19 PRO PRO A . n A 1 10 ALA 10 20 20 ALA ALA A . n A 1 11 HIS 11 21 21 HIS HIS A . n A 1 12 LEU 12 22 22 LEU LEU A . n A 1 13 ARG 13 23 23 ARG ARG A . n A 1 14 LEU 14 24 24 LEU LEU A . n A 1 15 GLN 15 25 25 GLN GLN A . n A 1 16 PRO 16 26 26 PRO PRO A . n A 1 17 ILE 17 27 27 ILE ILE A . n A 1 18 TYR 18 28 28 TYR TYR A . n A 1 19 TRP 19 29 29 TRP TRP A . n A 1 20 SER 20 30 30 SER SER A . n A 1 21 ARG 21 31 31 ARG ARG A . n A 1 22 ASP 22 32 32 ASP ASP A . n A 1 23 ASP 23 33 33 ASP ASP A . n A 1 24 VAL 24 34 34 VAL VAL A . n A 1 25 ALA 25 35 35 ALA ALA A . n A 1 26 GLN 26 36 36 GLN GLN A . n A 1 27 TRP 27 37 37 TRP TRP A . n A 1 28 LEU 28 38 38 LEU LEU A . n A 1 29 LYS 29 39 39 LYS LYS A . n A 1 30 TRP 30 40 40 TRP TRP A . n A 1 31 ALA 31 41 41 ALA ALA A . n A 1 32 GLU 32 42 42 GLU GLU A . n A 1 33 ASN 33 43 43 ASN ASN A . n A 1 34 GLU 34 44 44 GLU GLU A . n A 1 35 PHE 35 45 45 PHE PHE A . n A 1 36 SER 36 46 46 SER SER A . n A 1 37 LEU 37 47 47 LEU LEU A . n A 1 38 ARG 38 48 48 ARG ARG A . n A 1 39 PRO 39 49 49 PRO PRO A . n A 1 40 ILE 40 50 50 ILE ILE A . n A 1 41 ASP 41 51 51 ASP ASP A . n A 1 42 SER 42 52 52 SER SER A . n A 1 43 ASN 43 53 53 ASN ASN A . n A 1 44 THR 44 54 54 THR THR A . n A 1 45 PHE 45 55 55 PHE PHE A . n A 1 46 GLU 46 56 56 GLU GLU A . n A 1 47 MET 47 57 57 MET MET A . n A 1 48 ASN 48 58 58 ASN ASN A . n A 1 49 GLY 49 59 59 GLY GLY A . n A 1 50 LYS 50 60 60 LYS LYS A . n A 1 51 ASP 51 61 61 ASP ASP A . n A 1 52 LEU 52 62 62 LEU LEU A . n A 1 53 LEU 53 63 63 LEU LEU A . n A 1 54 LEU 54 64 64 LEU LEU A . n A 1 55 LEU 55 65 65 LEU LEU A . n A 1 56 THR 56 66 66 THR THR A . n A 1 57 LYS 57 67 67 LYS LYS A . n A 1 58 GLU 58 68 68 GLU GLU A . n A 1 59 ASP 59 69 69 ASP ASP A . n A 1 60 PHE 60 70 70 PHE PHE A . n A 1 61 ARG 61 71 71 ARG ARG A . n A 1 62 TYR 62 72 72 TYR TYR A . n A 1 63 ARG 63 73 73 ARG ARG A . n A 1 64 SER 64 74 74 SER SER A . n A 1 65 PRO 65 75 75 PRO PRO A . n A 1 66 HIS 66 76 76 HIS HIS A . n A 1 67 SER 67 77 77 SER SER A . n A 1 68 GLY 68 78 78 GLY GLY A . n A 1 69 ASP 69 79 79 ASP ASP A . n A 1 70 GLU 70 80 80 GLU GLU A . n A 1 71 LEU 71 81 81 LEU LEU A . n A 1 72 TYR 72 82 82 TYR TYR A . n A 1 73 GLU 73 83 83 GLU GLU A . n A 1 74 LEU 74 84 84 LEU LEU A . n A 1 75 LEU 75 85 85 LEU LEU A . n A 1 76 GLN 76 86 86 GLN GLN A . n A 1 77 HIS 77 87 87 HIS HIS A . n A 1 78 ILE 78 88 88 ILE ILE A . n A 1 79 LEU 79 89 89 LEU LEU A . n A 1 80 LYS 80 90 90 LYS LYS A . n A 1 81 GLN 81 91 91 GLN GLN A . n A 1 82 ARG 82 92 ? ? ? A . n A 1 83 LYS 83 93 ? ? ? A . n B 1 1 MET 1 11 ? ? ? B . n B 1 2 GLU 2 12 ? ? ? B . n B 1 3 GLU 3 13 ? ? ? B . n B 1 4 ASP 4 14 ? ? ? B . n B 1 5 SER 5 15 15 SER ALA B . n B 1 6 ILE 6 16 16 ILE ILE B . n B 1 7 ARG 7 17 17 ARG ARG B . n B 1 8 LEU 8 18 18 LEU LEU B . n B 1 9 PRO 9 19 19 PRO PRO B . n B 1 10 ALA 10 20 20 ALA ALA B . n B 1 11 HIS 11 21 21 HIS HIS B . n B 1 12 LEU 12 22 22 LEU LEU B . n B 1 13 ARG 13 23 23 ARG ARG B . n B 1 14 LEU 14 24 24 LEU LEU B . n B 1 15 GLN 15 25 25 GLN GLN B . n B 1 16 PRO 16 26 26 PRO PRO B . n B 1 17 ILE 17 27 27 ILE ILE B . n B 1 18 TYR 18 28 28 TYR TYR B . n B 1 19 TRP 19 29 29 TRP TRP B . n B 1 20 SER 20 30 30 SER SER B . n B 1 21 ARG 21 31 31 ARG ARG B . n B 1 22 ASP 22 32 32 ASP ASP B . n B 1 23 ASP 23 33 33 ASP ASP B . n B 1 24 VAL 24 34 34 VAL VAL B . n B 1 25 ALA 25 35 35 ALA ALA B . n B 1 26 GLN 26 36 36 GLN GLN B . n B 1 27 TRP 27 37 37 TRP TRP B . n B 1 28 LEU 28 38 38 LEU LEU B . n B 1 29 LYS 29 39 39 LYS LYS B . n B 1 30 TRP 30 40 40 TRP TRP B . n B 1 31 ALA 31 41 41 ALA ALA B . n B 1 32 GLU 32 42 42 GLU GLU B . n B 1 33 ASN 33 43 43 ASN ASN B . n B 1 34 GLU 34 44 44 GLU GLU B . n B 1 35 PHE 35 45 45 PHE PHE B . n B 1 36 SER 36 46 46 SER SER B . n B 1 37 LEU 37 47 47 LEU LEU B . n B 1 38 ARG 38 48 48 ARG ARG B . n B 1 39 PRO 39 49 49 PRO PRO B . n B 1 40 ILE 40 50 50 ILE ILE B . n B 1 41 ASP 41 51 51 ASP ASP B . n B 1 42 SER 42 52 52 SER SER B . n B 1 43 ASN 43 53 53 ASN ASN B . n B 1 44 THR 44 54 54 THR THR B . n B 1 45 PHE 45 55 55 PHE PHE B . n B 1 46 GLU 46 56 56 GLU GLU B . n B 1 47 MET 47 57 57 MET MET B . n B 1 48 ASN 48 58 58 ASN ASN B . n B 1 49 GLY 49 59 59 GLY GLY B . n B 1 50 LYS 50 60 60 LYS LYS B . n B 1 51 ASP 51 61 61 ASP ASP B . n B 1 52 LEU 52 62 62 LEU LEU B . n B 1 53 LEU 53 63 63 LEU LEU B . n B 1 54 LEU 54 64 64 LEU LEU B . n B 1 55 LEU 55 65 65 LEU LEU B . n B 1 56 THR 56 66 66 THR THR B . n B 1 57 LYS 57 67 67 LYS LYS B . n B 1 58 GLU 58 68 68 GLU GLU B . n B 1 59 ASP 59 69 69 ASP ASP B . n B 1 60 PHE 60 70 70 PHE PHE B . n B 1 61 ARG 61 71 71 ARG ARG B . n B 1 62 TYR 62 72 72 TYR TYR B . n B 1 63 ARG 63 73 73 ARG ARG B . n B 1 64 SER 64 74 74 SER SER B . n B 1 65 PRO 65 75 75 PRO PRO B . n B 1 66 HIS 66 76 76 HIS HIS B . n B 1 67 SER 67 77 77 SER SER B . n B 1 68 GLY 68 78 78 GLY GLY B . n B 1 69 ASP 69 79 79 ASP ASP B . n B 1 70 GLU 70 80 80 GLU GLU B . n B 1 71 LEU 71 81 81 LEU LEU B . n B 1 72 TYR 72 82 82 TYR TYR B . n B 1 73 GLU 73 83 83 GLU GLU B . n B 1 74 LEU 74 84 84 LEU LEU B . n B 1 75 LEU 75 85 85 LEU LEU B . n B 1 76 GLN 76 86 86 GLN GLN B . n B 1 77 HIS 77 87 87 HIS HIS B . n B 1 78 ILE 78 88 88 ILE ILE B . n B 1 79 LEU 79 89 89 LEU LEU B . n B 1 80 LYS 80 90 90 LYS LYS B . n B 1 81 GLN 81 91 91 GLN GLN B . n B 1 82 ARG 82 92 ? ? ? B . n B 1 83 LYS 83 93 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT 1 101 1 FMT FMT A . D 2 FMT 1 101 2 FMT FMT B . E 3 HOH 1 201 34 HOH HOH A . E 3 HOH 2 202 40 HOH HOH A . E 3 HOH 3 203 117 HOH HOH A . E 3 HOH 4 204 69 HOH HOH A . E 3 HOH 5 205 46 HOH HOH A . E 3 HOH 6 206 19 HOH HOH A . E 3 HOH 7 207 93 HOH HOH A . E 3 HOH 8 208 47 HOH HOH A . E 3 HOH 9 209 6 HOH HOH A . E 3 HOH 10 210 65 HOH HOH A . E 3 HOH 11 211 73 HOH HOH A . E 3 HOH 12 212 5 HOH HOH A . E 3 HOH 13 213 44 HOH HOH A . E 3 HOH 14 214 38 HOH HOH A . E 3 HOH 15 215 31 HOH HOH A . E 3 HOH 16 216 80 HOH HOH A . E 3 HOH 17 217 13 HOH HOH A . E 3 HOH 18 218 78 HOH HOH A . E 3 HOH 19 219 4 HOH HOH A . E 3 HOH 20 220 37 HOH HOH A . E 3 HOH 21 221 45 HOH HOH A . E 3 HOH 22 222 54 HOH HOH A . E 3 HOH 23 223 2 HOH HOH A . E 3 HOH 24 224 7 HOH HOH A . E 3 HOH 25 225 100 HOH HOH A . E 3 HOH 26 226 15 HOH HOH A . E 3 HOH 27 227 89 HOH HOH A . E 3 HOH 28 228 22 HOH HOH A . E 3 HOH 29 229 18 HOH HOH A . E 3 HOH 30 230 110 HOH HOH A . E 3 HOH 31 231 21 HOH HOH A . E 3 HOH 32 232 92 HOH HOH A . E 3 HOH 33 233 77 HOH HOH A . E 3 HOH 34 234 32 HOH HOH A . E 3 HOH 35 235 51 HOH HOH A . E 3 HOH 36 236 33 HOH HOH A . E 3 HOH 37 237 53 HOH HOH A . E 3 HOH 38 238 43 HOH HOH A . E 3 HOH 39 239 99 HOH HOH A . E 3 HOH 40 240 9 HOH HOH A . E 3 HOH 41 241 52 HOH HOH A . E 3 HOH 42 242 83 HOH HOH A . E 3 HOH 43 243 62 HOH HOH A . E 3 HOH 44 244 24 HOH HOH A . E 3 HOH 45 245 39 HOH HOH A . E 3 HOH 46 246 107 HOH HOH A . E 3 HOH 47 247 25 HOH HOH A . E 3 HOH 48 248 63 HOH HOH A . E 3 HOH 49 249 23 HOH HOH A . E 3 HOH 50 250 106 HOH HOH A . E 3 HOH 51 251 49 HOH HOH A . E 3 HOH 52 252 84 HOH HOH A . E 3 HOH 53 253 94 HOH HOH A . E 3 HOH 54 254 14 HOH HOH A . E 3 HOH 55 255 114 HOH HOH A . E 3 HOH 56 256 75 HOH HOH A . E 3 HOH 57 257 108 HOH HOH A . E 3 HOH 58 258 115 HOH HOH A . E 3 HOH 59 259 76 HOH HOH A . E 3 HOH 60 260 113 HOH HOH A . E 3 HOH 61 261 66 HOH HOH A . E 3 HOH 62 262 16 HOH HOH A . F 3 HOH 1 201 86 HOH HOH B . F 3 HOH 2 202 118 HOH HOH B . F 3 HOH 3 203 57 HOH HOH B . F 3 HOH 4 204 30 HOH HOH B . F 3 HOH 5 205 26 HOH HOH B . F 3 HOH 6 206 42 HOH HOH B . F 3 HOH 7 207 95 HOH HOH B . F 3 HOH 8 208 27 HOH HOH B . F 3 HOH 9 209 74 HOH HOH B . F 3 HOH 10 210 36 HOH HOH B . F 3 HOH 11 211 116 HOH HOH B . F 3 HOH 12 212 17 HOH HOH B . F 3 HOH 13 213 68 HOH HOH B . F 3 HOH 14 214 79 HOH HOH B . F 3 HOH 15 215 101 HOH HOH B . F 3 HOH 16 216 56 HOH HOH B . F 3 HOH 17 217 70 HOH HOH B . F 3 HOH 18 218 1 HOH HOH B . F 3 HOH 19 219 35 HOH HOH B . F 3 HOH 20 220 60 HOH HOH B . F 3 HOH 21 221 81 HOH HOH B . F 3 HOH 22 222 28 HOH HOH B . F 3 HOH 23 223 58 HOH HOH B . F 3 HOH 24 224 8 HOH HOH B . F 3 HOH 25 225 3 HOH HOH B . F 3 HOH 26 226 64 HOH HOH B . F 3 HOH 27 227 11 HOH HOH B . F 3 HOH 28 228 50 HOH HOH B . F 3 HOH 29 229 59 HOH HOH B . F 3 HOH 30 230 29 HOH HOH B . F 3 HOH 31 231 41 HOH HOH B . F 3 HOH 32 232 10 HOH HOH B . F 3 HOH 33 233 119 HOH HOH B . F 3 HOH 34 234 12 HOH HOH B . F 3 HOH 35 235 85 HOH HOH B . F 3 HOH 36 236 55 HOH HOH B . F 3 HOH 37 237 20 HOH HOH B . F 3 HOH 38 238 96 HOH HOH B . F 3 HOH 39 239 98 HOH HOH B . F 3 HOH 40 240 87 HOH HOH B . F 3 HOH 41 241 48 HOH HOH B . F 3 HOH 42 242 72 HOH HOH B . F 3 HOH 43 243 102 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 203 ? E HOH . 2 1 B HOH 235 ? F HOH . 3 1 B HOH 241 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-01-20 2 'Structure model' 1 1 2021-01-27 3 'Structure model' 1 2 2021-07-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' 13 2 'Structure model' '_citation_author.name' 14 3 'Structure model' '_citation.journal_volume' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1-2575 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 # _pdbx_entry_details.entry_id 7JU2 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id SER _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 15 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id OG _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id SER _pdbx_unobs_or_zero_occ_atoms.label_seq_id 5 _pdbx_unobs_or_zero_occ_atoms.label_atom_id OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 11 ? A MET 1 2 1 Y 1 A GLU 12 ? A GLU 2 3 1 Y 1 A GLU 13 ? A GLU 3 4 1 Y 1 A ASP 14 ? A ASP 4 5 1 Y 1 A ARG 92 ? A ARG 82 6 1 Y 1 A LYS 93 ? A LYS 83 7 1 Y 1 B MET 11 ? B MET 1 8 1 Y 1 B GLU 12 ? B GLU 2 9 1 Y 1 B GLU 13 ? B GLU 3 10 1 Y 1 B ASP 14 ? B ASP 4 11 1 Y 1 B ARG 92 ? B ARG 82 12 1 Y 1 B LYS 93 ? B LYS 83 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FORMIC ACID' FMT 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 65 2 2' _space_group.name_Hall 'P 65 2 (x,y,z+1/12)' _space_group.IT_number 179 _space_group.crystal_system hexagonal _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x-y,x,z+5/6 3 y,-x+y,z+1/6 4 -y,x-y,z+2/3 5 -x+y,-x,z+1/3 6 x-y,-y,-z 7 -x,-x+y,-z+1/3 8 -x,-y,z+1/2 9 y,x,-z+2/3 10 -y,-x,-z+1/6 11 -x+y,y,-z+1/2 12 x,x-y,-z+5/6 #