HEADER DNA BINDING PROTEIN 19-AUG-20 7JU3 TITLE MTRR BOUND TO THE MTRCDE OPERATOR FROM NEISSERIA GONORRHOEAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR MTRR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MULTIPLE TRANSFERRABLE RESISTANCE REGULATOR; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*TP*AP*TP*CP*CP*GP*TP*GP*CP*AP*AP*TP*CP*GP*TP*GP*TP*AP*TP*GP*T)- COMPND 9 3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*AP*CP*AP*TP*AP*CP*AP*CP*GP*AP*TP*TP*GP*CP*AP*CP*GP*GP*AP*TP*A)- COMPND 15 3'); COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: MTRR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 9 ORGANISM_TAXID: 485; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 14 ORGANISM_TAXID: 485; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TETR FAMILY, TRANSCRIPTION, GLOBAL REGULATOR, HELIX-TURN-HELIX MOTIF, KEYWDS 2 DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.A.BEGGS,W.M.SHAFER,R.G.BRENNAN REVDAT 4 18-OCT-23 7JU3 1 REMARK REVDAT 3 28-APR-21 7JU3 1 JRNL REVDAT 2 21-APR-21 7JU3 1 JRNL REVDAT 1 24-MAR-21 7JU3 0 JRNL AUTH G.A.BEGGS,J.C.AYALA,L.G.KAVANAUGH,T.D.READ,G.M.HOOKS, JRNL AUTH 2 M.A.SCHUMACHER,W.M.SHAFER,R.G.BRENNAN JRNL TITL STRUCTURES OF NEISSERIA GONORRHOEAE MTRR-OPERATOR COMPLEXES JRNL TITL 2 REVEAL MOLECULAR MECHANISMS OF DNA RECOGNITION AND JRNL TITL 3 ANTIBIOTIC RESISTANCE-CONFERRING CLINICAL MUTATIONS. JRNL REF NUCLEIC ACIDS RES. V. 49 4155 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33784401 JRNL DOI 10.1093/NAR/GKAB213 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 14896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.8420 - 6.0038 0.98 1314 146 0.1815 0.2234 REMARK 3 2 6.0038 - 4.7657 0.98 1299 143 0.2037 0.2434 REMARK 3 3 4.7657 - 4.1634 0.98 1276 142 0.1764 0.2279 REMARK 3 4 4.1634 - 3.7828 0.98 1284 140 0.2142 0.3029 REMARK 3 5 3.7828 - 3.5117 0.89 1139 127 0.2878 0.3281 REMARK 3 6 3.5117 - 3.3046 0.97 1268 133 0.2476 0.3443 REMARK 3 7 3.3046 - 3.1391 0.98 1248 142 0.2985 0.3402 REMARK 3 8 3.1391 - 3.0025 0.98 1283 139 0.2875 0.3850 REMARK 3 9 3.0025 - 2.8869 0.96 1242 139 0.3048 0.3486 REMARK 3 10 2.8869 - 2.7873 0.88 1124 124 0.3396 0.3634 REMARK 3 11 2.7873 - 2.7001 0.74 937 107 0.3643 0.4261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 8 THROUGH 209) REMARK 3 ORIGIN FOR THE GROUP (A): -48.5104 -8.9541 -11.2778 REMARK 3 T TENSOR REMARK 3 T11: 0.4908 T22: 0.3841 REMARK 3 T33: 0.7495 T12: -0.0785 REMARK 3 T13: -0.1084 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 4.4919 L22: 1.8102 REMARK 3 L33: 1.2256 L12: -1.9793 REMARK 3 L13: -1.4589 L23: 0.5743 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: 0.1978 S13: -0.0947 REMARK 3 S21: -0.4228 S22: 0.0278 S23: 0.5320 REMARK 3 S31: -0.1822 S32: -0.1084 S33: -0.0225 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 7 THROUGH 209) REMARK 3 ORIGIN FOR THE GROUP (A): -49.0795 -8.0676 11.8493 REMARK 3 T TENSOR REMARK 3 T11: 0.4200 T22: 0.4095 REMARK 3 T33: 0.6773 T12: 0.0376 REMARK 3 T13: -0.0009 T23: 0.1187 REMARK 3 L TENSOR REMARK 3 L11: 3.4594 L22: 1.9023 REMARK 3 L33: 1.0050 L12: 0.1785 REMARK 3 L13: 0.5805 L23: 0.3150 REMARK 3 S TENSOR REMARK 3 S11: -0.0985 S12: -0.3620 S13: -0.5890 REMARK 3 S21: 0.3937 S22: 0.2514 S23: 0.2536 REMARK 3 S31: 0.1282 S32: -0.1222 S33: -0.1853 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 21) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7358 -9.0390 -3.2263 REMARK 3 T TENSOR REMARK 3 T11: 0.6038 T22: 0.6699 REMARK 3 T33: 1.1195 T12: 0.1025 REMARK 3 T13: -0.0748 T23: -0.1773 REMARK 3 L TENSOR REMARK 3 L11: 2.1017 L22: 3.0850 REMARK 3 L33: 3.5565 L12: 0.5755 REMARK 3 L13: 0.2590 L23: 3.3093 REMARK 3 S TENSOR REMARK 3 S11: 0.5262 S12: 0.0907 S13: 0.3933 REMARK 3 S21: 0.2054 S22: 1.0869 S23: -1.4845 REMARK 3 S31: -0.2276 S32: 0.7847 S33: -1.1320 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 21) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4430 -8.9789 -3.9652 REMARK 3 T TENSOR REMARK 3 T11: 0.6402 T22: 0.8019 REMARK 3 T33: 1.3247 T12: 0.0168 REMARK 3 T13: -0.0139 T23: -0.2491 REMARK 3 L TENSOR REMARK 3 L11: 2.7767 L22: 2.6197 REMARK 3 L33: 5.8300 L12: -0.1951 REMARK 3 L13: 0.2164 L23: 2.1647 REMARK 3 S TENSOR REMARK 3 S11: 0.4447 S12: 0.4925 S13: 0.1435 REMARK 3 S21: -0.2424 S22: 1.1826 S23: -1.2382 REMARK 3 S31: 0.4136 S32: 1.1245 S33: -1.4230 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15036 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 69.842 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7JNP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM CALCIUM ACETATE, 100 MM TRIS REMARK 280 -HCL PH 7.5, 27% POLYETHYLENE GLYCOL MW-8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.63650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.63650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 GLU A 7 REMARK 465 LYS A 210 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 THR B 4 REMARK 465 LYS B 5 REMARK 465 THR B 6 REMARK 465 LYS B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 9 CG CD1 CD2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ILE A 73 CG1 CG2 CD1 REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLN A 121 CG CD OE1 NE2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 GLN A 151 CG CD OE1 NE2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 LEU B 9 CG CD1 CD2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 ASP B 59 CG OD1 OD2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 75 CG CD OE1 NE2 REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 GLU B 97 CG CD OE1 OE2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLN B 121 CG CD OE1 NE2 REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 ASP B 155 CG OD1 OD2 REMARK 470 GLU B 160 CG CD OE1 OE2 REMARK 470 LYS B 188 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 48 OP2 DG D 13 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 42 -164.97 -127.76 REMARK 500 ASN A 53 -165.93 -161.81 REMARK 500 ASP A 76 0.54 -68.90 REMARK 500 GLU A 149 0.44 -68.37 REMARK 500 ALA B 8 -120.42 60.39 REMARK 500 ASP B 79 90.47 -61.29 REMARK 500 GLU B 81 75.21 -114.94 REMARK 500 SER B 84 -41.93 -138.13 REMARK 500 ASP B 156 41.95 -93.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 30 O REMARK 620 2 GLU A 35 OE1 115.8 REMARK 620 3 HOH A 407 O 74.0 65.2 REMARK 620 4 HOH A 421 O 80.9 151.0 100.3 REMARK 620 5 HOH D 203 O 134.5 66.0 131.0 120.4 REMARK 620 6 HOH D 206 O 147.2 74.1 83.9 79.6 78.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 202 OE2 REMARK 620 2 HOH A 419 O 92.4 REMARK 620 3 HOH A 422 O 93.9 58.8 REMARK 620 4 HOH A 426 O 134.7 106.3 131.2 REMARK 620 5 HOH B 408 O 163.1 71.5 73.6 57.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 30 O REMARK 620 2 GLU B 35 OE1 122.0 REMARK 620 3 GLU B 35 OE2 84.7 48.6 REMARK 620 4 HOH B 401 O 56.3 91.2 95.2 REMARK 620 5 HOH B 410 O 59.3 145.9 101.9 110.7 REMARK 620 6 HOH B 416 O 83.6 152.1 156.2 95.3 54.4 REMARK 620 7 HOH C 102 O 91.1 93.8 62.8 143.5 53.0 96.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 103 O REMARK 620 2 HOH C 104 O 46.6 REMARK 620 3 HOH D 202 O 56.5 72.8 REMARK 620 4 HOH D 207 O 93.1 48.0 86.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7JNP RELATED DB: PDB REMARK 900 7JNP CONTAINS SAME PROTEIN COMPLEXED WITH DIFFERENT OPERATOR DBREF 7JU3 A 1 210 UNP P39897 MTRR_NEIGO 1 210 DBREF 7JU3 B 1 210 UNP P39897 MTRR_NEIGO 1 210 DBREF 7JU3 C 1 21 PDB 7JU3 7JU3 1 21 DBREF 7JU3 D 1 21 PDB 7JU3 7JU3 1 21 SEQADV 7JU3 SER A -2 UNP P39897 EXPRESSION TAG SEQADV 7JU3 ASN A -1 UNP P39897 EXPRESSION TAG SEQADV 7JU3 ALA A 0 UNP P39897 EXPRESSION TAG SEQADV 7JU3 SER B -2 UNP P39897 EXPRESSION TAG SEQADV 7JU3 ASN B -1 UNP P39897 EXPRESSION TAG SEQADV 7JU3 ALA B 0 UNP P39897 EXPRESSION TAG SEQRES 1 A 213 SER ASN ALA MET ARG LYS THR LYS THR GLU ALA LEU LYS SEQRES 2 A 213 THR LYS GLU HIS LEU MET LEU ALA ALA LEU GLU THR PHE SEQRES 3 A 213 TYR ARG LYS GLY ILE ALA ARG THR SER LEU ASN GLU ILE SEQRES 4 A 213 ALA GLN ALA ALA GLY VAL THR ARG GLY ALA LEU TYR TRP SEQRES 5 A 213 HIS PHE LYS ASN LYS GLU ASP LEU PHE ASP ALA LEU PHE SEQRES 6 A 213 GLN ARG ILE CYS ASP ASP ILE GLU ASN CYS ILE ALA GLN SEQRES 7 A 213 ASP ALA ALA ASP ALA GLU GLY GLY SER TRP THR VAL PHE SEQRES 8 A 213 ARG HIS THR LEU LEU HIS PHE PHE GLU ARG LEU GLN SER SEQRES 9 A 213 ASN ASP ILE HIS TYR LYS PHE HIS ASN ILE LEU PHE LEU SEQRES 10 A 213 LYS CYS GLU HIS THR GLU GLN ASN ALA ALA VAL ILE ALA SEQRES 11 A 213 ILE ALA ARG LYS HIS GLN ALA ILE TRP ARG GLU LYS ILE SEQRES 12 A 213 THR ALA VAL LEU THR GLU ALA VAL GLU ASN GLN ASP LEU SEQRES 13 A 213 ALA ASP ASP LEU ASP LYS GLU THR ALA VAL ILE PHE ILE SEQRES 14 A 213 LYS SER THR LEU ASP GLY LEU ILE TRP ARG TRP PHE SER SEQRES 15 A 213 SER GLY GLU SER PHE ASP LEU GLY LYS THR ALA PRO ARG SEQRES 16 A 213 ILE ILE GLY ILE MET MET ASP ASN LEU GLU ASN HIS PRO SEQRES 17 A 213 CYS LEU ARG ARG LYS SEQRES 1 B 213 SER ASN ALA MET ARG LYS THR LYS THR GLU ALA LEU LYS SEQRES 2 B 213 THR LYS GLU HIS LEU MET LEU ALA ALA LEU GLU THR PHE SEQRES 3 B 213 TYR ARG LYS GLY ILE ALA ARG THR SER LEU ASN GLU ILE SEQRES 4 B 213 ALA GLN ALA ALA GLY VAL THR ARG GLY ALA LEU TYR TRP SEQRES 5 B 213 HIS PHE LYS ASN LYS GLU ASP LEU PHE ASP ALA LEU PHE SEQRES 6 B 213 GLN ARG ILE CYS ASP ASP ILE GLU ASN CYS ILE ALA GLN SEQRES 7 B 213 ASP ALA ALA ASP ALA GLU GLY GLY SER TRP THR VAL PHE SEQRES 8 B 213 ARG HIS THR LEU LEU HIS PHE PHE GLU ARG LEU GLN SER SEQRES 9 B 213 ASN ASP ILE HIS TYR LYS PHE HIS ASN ILE LEU PHE LEU SEQRES 10 B 213 LYS CYS GLU HIS THR GLU GLN ASN ALA ALA VAL ILE ALA SEQRES 11 B 213 ILE ALA ARG LYS HIS GLN ALA ILE TRP ARG GLU LYS ILE SEQRES 12 B 213 THR ALA VAL LEU THR GLU ALA VAL GLU ASN GLN ASP LEU SEQRES 13 B 213 ALA ASP ASP LEU ASP LYS GLU THR ALA VAL ILE PHE ILE SEQRES 14 B 213 LYS SER THR LEU ASP GLY LEU ILE TRP ARG TRP PHE SER SEQRES 15 B 213 SER GLY GLU SER PHE ASP LEU GLY LYS THR ALA PRO ARG SEQRES 16 B 213 ILE ILE GLY ILE MET MET ASP ASN LEU GLU ASN HIS PRO SEQRES 17 B 213 CYS LEU ARG ARG LYS SEQRES 1 C 21 DT DA DT DC DC DG DT DG DC DA DA DT DC SEQRES 2 C 21 DG DT DG DT DA DT DG DT SEQRES 1 D 21 DA DC DA DT DA DC DA DC DG DA DT DT DG SEQRES 2 D 21 DC DA DC DG DG DA DT DA HET CA A 301 1 HET CA A 302 1 HET CA B 301 1 HET CA D 101 1 HETNAM CA CALCIUM ION FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *69(H2 O) HELIX 1 AA1 LEU A 9 GLY A 27 1 19 HELIX 2 AA2 SER A 32 ALA A 40 1 9 HELIX 3 AA3 THR A 43 PHE A 51 1 9 HELIX 4 AA4 ASN A 53 ALA A 80 1 28 HELIX 5 AA5 GLY A 83 ASN A 102 1 20 HELIX 6 AA6 ASN A 102 LYS A 115 1 14 HELIX 7 AA7 ASN A 122 GLU A 149 1 28 HELIX 8 AA8 ASP A 158 SER A 180 1 23 HELIX 9 AA9 ASP A 185 HIS A 204 1 20 HELIX 10 AB1 PRO A 205 ARG A 208 5 4 HELIX 11 AB2 ALA B 8 GLY B 27 1 20 HELIX 12 AB3 SER B 32 ALA B 40 1 9 HELIX 13 AB4 THR B 43 PHE B 51 1 9 HELIX 14 AB5 ASN B 53 ASP B 79 1 27 HELIX 15 AB6 SER B 84 ASN B 102 1 19 HELIX 16 AB7 ASN B 102 LYS B 115 1 14 HELIX 17 AB8 ASN B 122 GLU B 149 1 28 HELIX 18 AB9 ASP B 158 SER B 180 1 23 HELIX 19 AC1 ASP B 185 HIS B 204 1 20 HELIX 20 AC2 PRO B 205 ARG B 208 5 4 LINK O ARG A 30 CA CA A 301 1555 1555 2.41 LINK OE1 GLU A 35 CA CA A 301 1555 1555 3.17 LINK OE2 GLU A 202 CA CA A 302 1555 1555 2.48 LINK CA CA A 301 O HOH A 407 1555 1555 2.66 LINK CA CA A 301 O HOH A 421 1555 1555 2.58 LINK CA CA A 301 O HOH D 203 1555 1555 2.56 LINK CA CA A 301 O HOH D 206 1555 1555 2.56 LINK CA CA A 302 O HOH A 419 1555 1555 2.53 LINK CA CA A 302 O HOH A 422 1555 1555 2.65 LINK CA CA A 302 O HOH A 426 1555 1555 2.85 LINK CA CA A 302 O HOH B 408 1555 2455 2.48 LINK O ARG B 30 CA CA B 301 1555 1555 2.46 LINK OE1 GLU B 35 CA CA B 301 1555 1555 2.84 LINK OE2 GLU B 35 CA CA B 301 1555 1555 2.43 LINK CA CA B 301 O HOH B 401 1555 1555 2.47 LINK CA CA B 301 O HOH B 410 1555 1555 2.71 LINK CA CA B 301 O HOH B 416 1555 1555 2.45 LINK CA CA B 301 O HOH C 102 1555 1555 2.46 LINK O HOH C 103 CA CA D 101 1555 1555 2.93 LINK O HOH C 104 CA CA D 101 1555 1555 2.89 LINK CA CA D 101 O HOH D 202 1555 1555 2.59 LINK CA CA D 101 O HOH D 207 1555 1555 2.87 CRYST1 153.273 59.420 69.508 90.00 114.31 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006524 0.000000 0.002947 0.00000 SCALE2 0.000000 0.016829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015786 0.00000