HEADER HYDROLASE 22-AUG-20 7JVS TITLE CRYSTAL STRUCTURE OF AN ESSENTIAL RIBOSOMAL PROCESSING PROTEASE PRP TITLE 2 FROM S. AUREUS IN COMPLEX WITH A SUBSTRATE PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL-PROCESSING CYSTEINE PROTEASE PRP; COMPND 3 CHAIN: B, D; COMPND 4 SYNONYM: RIBOSOME-ASSOCIATED PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: L27 RIBOSOMAL PEPTIDE; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: AMINO TERMINAL K ACETYLATED CARBOXYL TERMINAL G COMPND 12 AMIDATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: BN1321_260284, BTN44_03930, C7P97_01985, CSC87_06715, SOURCE 5 DD544_01544, DD547_01729, DDL17_04735, DQV20_11645, DQV53_09155, SOURCE 6 E3A28_00240, E3K14_08315, E4U00_05990, EP54_09330, EQ90_02345, SOURCE 7 ERS072840_00776, FA040_12870, FVP29_06750, GF545_03610, GIX97_04380, SOURCE 8 GO677_13485, GO706_06595, GO746_11035, GO793_02925, GO793_12515, SOURCE 9 GO803_01985, GO805_05045, GO810_16085, GO821_00235, GO894_13395, SOURCE 10 GO915_03870, GO941_09805, HMPREF3211_01798, M1K003_1397, SOURCE 11 NCTC10654_01710, NCTC10702_02585, NCTC5664_03624, NCTC6133_02188, SOURCE 12 NCTC7878_03165, RK64_08805, SAMEA1029528_01686, SAMEA1029547_02076, SOURCE 13 SAMEA1029553_02519, SAMEA1469856_00607, SAMEA1469884_01223, SOURCE 14 SAMEA1531680_00288, SAMEA1531701_01205, SAMEA1964876_02447, SOURCE 15 SAMEA1965205_02481, SAMEA1966505_02490, SAMEA1969349_02416, SOURCE 16 SAMEA1969845_01676, SAMEA1971706_01055, SAMEA1972827_01838, SOURCE 17 SAMEA2076212_01600, SAMEA2076218_01666, SAMEA2076220_01752, SOURCE 18 SAMEA2076226_01556, SAMEA2076463_02381, SAMEA2076464_02394, SOURCE 19 SAMEA2076470_02431, SAMEA2076472_02346, SAMEA2076478_02402, SOURCE 20 SAMEA2076480_02456, SAMEA2076481_02468, SAMEA2076743_02501, SOURCE 21 SAMEA2076745_02445, SAMEA2076746_02444, SAMEA2076747_02486, SOURCE 22 SAMEA2076749_02400, SAMEA2076751_02425, SAMEA2076752_02493, SOURCE 23 SAMEA2076755_02464, SAMEA2076756_02514, SAMEA2076758_02521, SOURCE 24 SAMEA2076759_02515, SAMEA2076761_02557, SAMEA2076762_01945, SOURCE 25 SAMEA2076763_01877, SAMEA2076764_02486, SAMEA2076765_02396, SOURCE 26 SAMEA2077023_02451, SAMEA2077025_02500, SAMEA2077027_02451, SOURCE 27 SAMEA2077029_02463, SAMEA2077031_02497, SAMEA2077034_01994, SOURCE 28 SAMEA2077035_02483, SAMEA2077039_02486, SAMEA2077040_02404, SOURCE 29 SAMEA2077041_02447, SAMEA2077044_02452, SAMEA2077045_02427, SOURCE 30 SAMEA2077046_02417, SAMEA2077293_02510, SAMEA2077294_02438, SOURCE 31 SAMEA2077295_02425, SAMEA2077297_02396, SAMEA2077300_02477, SOURCE 32 SAMEA2077301_02476, SAMEA2077302_02443, SAMEA2077303_02458, SOURCE 33 SAMEA2077307_02357, SAMEA2078252_02489, SAMEA2078256_02457, SOURCE 34 SAMEA2078307_02502, SAMEA2078308_02409, SAMEA2078553_02399, SOURCE 35 SAMEA2078558_02472, SAMEA2078560_02496, SAMEA2078569_00046, SOURCE 36 SAMEA2078570_02413, SAMEA2078572_02514, SAMEA2078824_02435, SOURCE 37 SAMEA2079048_02570, SAMEA2079051_02465, SAMEA2079277_01808, SOURCE 38 SAMEA2079291_02682, SAMEA2079503_02553, SAMEA2079507_01005, SOURCE 39 SAMEA2079512_02667, SAMEA2079517_02674, SAMEA2079724_01337, SOURCE 40 SAMEA2079727_01612, SAMEA2079728_01943, SAMEA2079732_01656, SOURCE 41 SAMEA2079946_01624, SAMEA2079949_01591, SAMEA2079952_01419, SOURCE 42 SAMEA2079957_01912, SAMEA2079958_01822, SAMEA2079960_01835, SOURCE 43 SAMEA2079961_01609, SAMEA2079968_01340, SAMEA2080329_01468, SOURCE 44 SAMEA2080330_01912, SAMEA2080334_01932, SAMEA2080433_01740, SOURCE 45 SAMEA2080812_02522, SAMEA2080898_02518, SAMEA2080900_02445, SOURCE 46 SAMEA2080904_02459, SAMEA2080913_02507, SAMEA2081043_02492, SOURCE 47 SAMEA2081053_02569, SAMEA2081054_02533, SAMEA2081055_02521, SOURCE 48 SAMEA2081060_01823, SAMEA2081211_00857, SAMEA2081213_00881, SOURCE 49 SAMEA2081218_01649, SAMEA2081341_01341, SAMEA2081342_01612, SOURCE 50 SAMEA2081349_01864, SAMEA2081359_01619, SAMEA2081362_01623, SOURCE 51 SAMEA2081468_02419, SAMEA2081474_02496, SAMEA2081475_02467, SOURCE 52 SAMEA2081476_02433, SAMEA2081479_02517, SAMEA2081480_02464, SOURCE 53 SAMEA2081560_02361, SAMEA2081561_02437, SAMEA2081564_02416, SOURCE 54 SAMEA2081567_02404, SAMEA2081568_02500, SAMEA2081569_02476, SOURCE 55 SAMEA2081570_02367, SAMEA2081571_02441, SAMEA2081572_02441, SOURCE 56 SAMEA2081573_02444, SAMEA2081575_02417, SAMEA2081577_02472, SOURCE 57 SAMEA2081578_02440, SAMEA2081579_02464, SAMEA2081581_02376, SOURCE 58 SAMEA2081582_02553, SAMEA2081673_01456, SAMEA2081674_01693, SOURCE 59 SAMEA958766_01141, SAMEA958770_01541, SAMEA958772_01367, SOURCE 60 SAMEA958778_01377, SAMEA958779_02720, SAMEA958785_01190, SOURCE 61 SAMEA958793_01565, SAMEA958798_01254, SAMEA958804_01429, SOURCE 62 SAMEA958810_02901, SAMEA958836_01614, SAMEA958838_02812, SOURCE 63 SAMEA958845_01498, SAMEA958846_01744, SAMEA958848_02333, SOURCE 64 SAMEA958855_02126, SAMEA958858_02293, SAMEA958870_02489, SOURCE 65 SAMEA958898_01783, SAMEA958906_02170, SAMEA958924_01277, SOURCE 66 SAMEA958925_01299, SAMEA958951_01296, SAMEA958953_00896, SOURCE 67 SAMEA958961_01996, SAMEA958979_01146, SAMEA958987_02151, SOURCE 68 SAMEA958995_01155, SAST44_01826, SAST45_01804; SOURCE 69 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 70 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 71 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 72 MOL_ID: 2; SOURCE 73 SYNTHETIC: YES; SOURCE 74 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 75 ORGANISM_TAXID: 1280 KEYWDS CYSTEINE PROTEASE RIBOSOMAL PROTEIN L27, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.T.WRIGHT,D.PETERSON REVDAT 2 18-OCT-23 7JVS 1 REMARK REVDAT 1 01-SEP-21 7JVS 0 JRNL AUTH H.T.WRIGHT,D.PETERSON,G.CHRISTIE JRNL TITL CRYSTAL STRUCTURE OF AN ESSENTIAL RIBOSOMAL PROCESSING JRNL TITL 2 PROTEASE PRP FROM S. AUREUS IN COMPLEX WITH A SUBSTRATE JRNL TITL 3 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 8950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.680 REMARK 3 FREE R VALUE TEST SET COUNT : 508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8400 - 3.6500 0.99 2195 140 0.2001 0.2245 REMARK 3 2 3.6500 - 2.9000 1.00 2102 119 0.2377 0.2806 REMARK 3 3 2.9000 - 2.5300 1.00 2079 132 0.2666 0.3578 REMARK 3 4 2.5300 - 2.3000 0.99 2066 117 0.2552 0.3199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.268 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.824 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1687 REMARK 3 ANGLE : 1.536 2298 REMARK 3 CHIRALITY : 0.098 276 REMARK 3 PLANARITY : 0.009 304 REMARK 3 DIHEDRAL : 18.876 580 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54056 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX-HF ARC REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9024 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.60 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.80 REMARK 200 R MERGE FOR SHELL (I) : 1.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PEO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, HEPES, CACL2, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.13900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.13900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.27600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.41200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.27600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.41200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.13900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.27600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.41200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.13900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.27600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 28.41200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI D 202 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE C 0 REMARK 465 GLY C 12 REMARK 465 NH2 C 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 10 CG OD1 OD2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 GLU B 95 CD OE1 OE2 REMARK 470 ASN B 98 CG OD1 ND2 REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS C 1 CG CD CE NZ REMARK 470 LYS C 10 CG CD CE NZ REMARK 470 LYS C 11 CG CD CE NZ REMARK 470 ASP D 20 OD1 OD2 REMARK 470 HIS D 22 CG ND1 CD2 CE1 NE2 REMARK 470 GLU D 27 CG CD OE1 OE2 REMARK 470 ASP D 62 CG OD1 OD2 REMARK 470 GLN D 63 CG CD OE1 NE2 REMARK 470 GLU D 95 CG CD OE1 OE2 REMARK 470 GLU D 99 CG CD OE1 OE2 REMARK 470 ARG D 102 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 9 175.39 -59.52 REMARK 500 VAL B 72 -65.90 -109.24 REMARK 500 VAL D 72 -64.25 -109.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 51 O REMARK 620 2 GLU B 78 OE1 77.2 REMARK 620 3 GLU B 78 OE2 112.2 42.1 REMARK 620 4 ALA D 23 O 62.9 93.6 89.1 REMARK 620 5 HOH D 309 O 147.5 105.0 86.8 146.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL D 8 O REMARK 620 2 LYS D 106 O 79.3 REMARK 620 3 LYS D 106 OXT 119.9 43.1 REMARK 620 4 HOH D 310 O 82.5 131.1 143.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 66 NE2 REMARK 620 2 HIS D 66 NE2 0.0 REMARK 620 3 HIS D 68 ND1 123.4 123.4 REMARK 620 4 HIS D 68 ND1 123.4 123.4 0.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PEO RELATED DB: PDB DBREF 7JVS B 1 106 UNP W8U5D2 W8U5D2_STAAU 1 106 DBREF 7JVS C 0 13 PDB 7JVS 7JVS 0 13 DBREF 7JVS D 1 106 UNP W8U5D2 W8U5D2_STAAU 1 106 SEQADV 7JVS SER B 34 UNP W8U5D2 CYS 34 ENGINEERED MUTATION SEQADV 7JVS GLN B 63 UNP W8U5D2 ASN 63 ENGINEERED MUTATION SEQADV 7JVS SER D 34 UNP W8U5D2 CYS 34 ENGINEERED MUTATION SEQADV 7JVS GLN D 63 UNP W8U5D2 ASN 63 ENGINEERED MUTATION SEQRES 1 B 106 MET ILE THR VAL ASP ILE THR VAL ASN ASP GLU GLY LYS SEQRES 2 B 106 VAL THR ASP VAL ILE MET ASP GLY HIS ALA ASP HIS GLY SEQRES 3 B 106 GLU TYR GLY HIS ASP ILE VAL SER ALA GLY ALA SER ALA SEQRES 4 B 106 VAL LEU PHE GLY SER VAL ASN ALA ILE ILE GLY LEU THR SEQRES 5 B 106 SER GLU ARG PRO ASP ILE ASN TYR ASP ASP GLN GLY GLY SEQRES 6 B 106 HIS PHE HIS ILE ARG SER VAL ASP THR ASN ASN ASP GLU SEQRES 7 B 106 ALA GLN LEU ILE LEU GLN THR MET LEU VAL SER LEU GLN SEQRES 8 B 106 THR ILE GLU GLU GLU TYR ASN GLU ASN ILE ARG LEU ASN SEQRES 9 B 106 TYR LYS SEQRES 1 C 14 ACE LYS LEU ASN LEU GLN PHE PHE ALA SER LYS LYS GLY SEQRES 2 C 14 NH2 SEQRES 1 D 106 MET ILE THR VAL ASP ILE THR VAL ASN ASP GLU GLY LYS SEQRES 2 D 106 VAL THR ASP VAL ILE MET ASP GLY HIS ALA ASP HIS GLY SEQRES 3 D 106 GLU TYR GLY HIS ASP ILE VAL SER ALA GLY ALA SER ALA SEQRES 4 D 106 VAL LEU PHE GLY SER VAL ASN ALA ILE ILE GLY LEU THR SEQRES 5 D 106 SER GLU ARG PRO ASP ILE ASN TYR ASP ASP GLN GLY GLY SEQRES 6 D 106 HIS PHE HIS ILE ARG SER VAL ASP THR ASN ASN ASP GLU SEQRES 7 D 106 ALA GLN LEU ILE LEU GLN THR MET LEU VAL SER LEU GLN SEQRES 8 D 106 THR ILE GLU GLU GLU TYR ASN GLU ASN ILE ARG LEU ASN SEQRES 9 D 106 TYR LYS HET CA B 201 1 HET CA D 201 1 HET NI D 202 1 HETNAM CA CALCIUM ION HETNAM NI NICKEL (II) ION FORMUL 4 CA 2(CA 2+) FORMUL 6 NI NI 2+ FORMUL 7 HOH *24(H2 O) HELIX 1 AA1 ASP B 31 THR B 52 1 22 HELIX 2 AA2 ASN B 76 TYR B 97 1 22 HELIX 3 AA3 GLY D 29 LEU D 51 1 23 HELIX 4 AA4 ASN D 76 TYR D 97 1 22 SHEET 1 AA1 5 ASP B 57 ASP B 61 0 SHEET 2 AA1 5 HIS B 66 ARG B 70 -1 O ARG B 70 N ASP B 57 SHEET 3 AA1 5 VAL B 14 ASP B 20 -1 N MET B 19 O PHE B 67 SHEET 4 AA1 5 ILE B 2 VAL B 8 -1 N ASP B 5 O ILE B 18 SHEET 5 AA1 5 ILE B 101 LYS B 106 1 O ASN B 104 N VAL B 4 SHEET 1 AA2 5 ASP D 57 ASP D 61 0 SHEET 2 AA2 5 HIS D 66 ARG D 70 -1 O HIS D 66 N ASP D 61 SHEET 3 AA2 5 VAL D 14 ASP D 20 -1 N MET D 19 O PHE D 67 SHEET 4 AA2 5 ILE D 2 VAL D 8 -1 N THR D 7 O ASP D 16 SHEET 5 AA2 5 ILE D 101 LYS D 106 1 O ASN D 104 N ILE D 6 LINK O LEU B 51 CA CA B 201 1555 1555 2.54 LINK OE1 GLU B 78 CA CA B 201 1555 1555 2.75 LINK OE2 GLU B 78 CA CA B 201 1555 1555 3.03 LINK CA CA B 201 O ALA D 23 5555 1555 3.17 LINK CA CA B 201 O HOH D 309 1555 5445 3.08 LINK O VAL D 8 CA CA D 201 1555 1555 2.83 LINK NE2 HIS D 66 NI NI D 202 1555 1555 2.73 LINK NE2 HIS D 66 NI NI D 202 1555 3655 2.73 LINK ND1 HIS D 68 NI NI D 202 1555 1555 2.35 LINK ND1 HIS D 68 NI NI D 202 1555 3655 2.35 LINK O LYS D 106 CA CA D 201 1555 1555 3.03 LINK OXT LYS D 106 CA CA D 201 1555 1555 2.74 LINK CA CA D 201 O HOH D 310 1555 1555 2.46 CRYST1 52.552 56.824 130.278 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007676 0.00000