HEADER SIGNALING PROTEIN 24-AUG-20 7JVX TITLE CRYSTAL STRUCTURE OF PTEN (AA 7-353 FOLLOWED BY SPACER TITLE 2 TGGGSGGTGGGSGGTGGGCY LIGATED TO PEPTIDE PSDPTPTDPSDPENEPFDED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND COMPND 3 DUAL-SPECIFICITY PROTEIN PHOSPHATASE PTEN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MUTATED IN MULTIPLE ADVANCED CANCERS 1,PHOSPHATASE AND COMPND 6 TENSIN HOMOLOG; COMPND 7 EC: 3.1.3.16,3.1.3.48,3.1.3.67; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTEN, MMAC1, TEP1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS PHOSPHATASE, PHOSPHATIDYLINOSITOL 3, 4, 5-TRISPHOSPHATE 3-PHOSPHATASE KEYWDS 2 AND DUAL-SPECIFICITY PROTEIN PHOSPHATASE PTEN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.DEMPSEY,K.PHAN,P.COLE,S.B.GABELLI REVDAT 3 18-OCT-23 7JVX 1 REMARK REVDAT 2 20-OCT-21 7JVX 1 JRNL REVDAT 1 04-AUG-21 7JVX 0 JRNL AUTH D.R.DEMPSEY,T.VIENNET,R.IWASE,E.PARK,S.HENRIQUEZ,Z.CHEN, JRNL AUTH 2 J.R.JELIAZKOV,B.A.PALANSKI,K.L.PHAN,P.COOTE,J.J.GRAY, JRNL AUTH 3 M.J.ECK,S.B.GABELLI,H.ARTHANARI,P.A.COLE JRNL TITL THE STRUCTURAL BASIS OF PTEN REGULATION BY MULTI-SITE JRNL TITL 2 PHOSPHORYLATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 28 858 2021 JRNL REFN ESSN 1545-9985 JRNL PMID 34625746 JRNL DOI 10.1038/S41594-021-00668-5 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 5538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 351 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.30000 REMARK 3 B22 (A**2) : -6.30000 REMARK 3 B33 (A**2) : 12.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.680 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.812 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 51.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2711 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2532 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3656 ; 1.738 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5832 ; 1.499 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 5.653 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;35.789 ;21.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;20.916 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.166 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3028 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 680 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7JVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7482 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 2.691 REMARK 200 R MERGE (I) : 0.21200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.47 REMARK 200 R MERGE FOR SHELL (I) : 0.57900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1D5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 MM CITRATE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.69500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.69500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.95000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.69500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.69500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.95000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 56.69500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 56.69500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.95000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 56.69500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 56.69500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ILE A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 PRO A 283 REMARK 465 GLU A 284 REMARK 465 GLU A 285 REMARK 465 THR A 286 REMARK 465 SER A 287 REMARK 465 GLU A 288 REMARK 465 LYS A 289 REMARK 465 VAL A 290 REMARK 465 GLU A 291 REMARK 465 ASN A 292 REMARK 465 GLY A 293 REMARK 465 SER A 294 REMARK 465 LEU A 295 REMARK 465 CYS A 296 REMARK 465 ASP A 297 REMARK 465 GLN A 298 REMARK 465 GLU A 299 REMARK 465 ILE A 300 REMARK 465 ASP A 301 REMARK 465 SER A 302 REMARK 465 ILE A 303 REMARK 465 CYS A 304 REMARK 465 SER A 305 REMARK 465 ILE A 306 REMARK 465 GLU A 307 REMARK 465 ARG A 308 REMARK 465 ALA A 309 REMARK 465 ASP A 310 REMARK 465 ASN A 311 REMARK 465 ASP A 312 REMARK 465 LYS A 313 REMARK 465 GLU A 352 REMARK 465 GLU A 353 REMARK 465 PRO A 354 REMARK 465 SER A 355 REMARK 465 ASN A 356 REMARK 465 PRO A 357 REMARK 465 GLU A 358 REMARK 465 ALA A 359 REMARK 465 SER A 360 REMARK 465 SER A 361 REMARK 465 SER A 362 REMARK 465 THR A 363 REMARK 465 SER A 364 REMARK 465 VAL A 365 REMARK 465 THR A 366 REMARK 465 PRO A 367 REMARK 465 ASP A 368 REMARK 465 VAL A 369 REMARK 465 SER A 370 REMARK 465 ASP A 371 REMARK 465 ASN A 372 REMARK 465 GLU A 373 REMARK 465 PRO A 374 REMARK 465 ASP A 375 REMARK 465 HIS A 376 REMARK 465 TYR A 377 REMARK 465 ARG A 378 REMARK 465 TYR A 379 REMARK 465 SER A 380 REMARK 465 THR A 381 REMARK 465 GLY A 382 REMARK 465 GLY A 383 REMARK 465 GLY A 384 REMARK 465 SER A 385 REMARK 465 GLY A 386 REMARK 465 GLY A 387 REMARK 465 THR A 388 REMARK 465 GLY A 389 REMARK 465 GLY A 390 REMARK 465 GLY A 391 REMARK 465 SER A 392 REMARK 465 GLY A 393 REMARK 465 GLY A 394 REMARK 465 THR A 395 REMARK 465 GLY A 396 REMARK 465 GLY A 397 REMARK 465 GLY A 398 REMARK 465 CYS A 399 REMARK 465 ASP A 400 REMARK 465 THR A 401 REMARK 465 THR A 402 REMARK 465 ASP A 403 REMARK 465 SER A 404 REMARK 465 ASP A 405 REMARK 465 PRO A 406 REMARK 465 GLU A 407 REMARK 465 ASN A 408 REMARK 465 GLU A 409 REMARK 465 PRO A 410 REMARK 465 PHE A 411 REMARK 465 ASP A 412 REMARK 465 GLU A 413 REMARK 465 ASP A 414 REMARK 465 GLN A 415 REMARK 465 HIS A 416 REMARK 465 THR A 417 REMARK 465 GLN A 418 REMARK 465 ILE A 419 REMARK 465 THR A 420 REMARK 465 LYS A 421 REMARK 465 VAL A 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 47 O THR A 319 6445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 213 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 PRO A 248 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 17 39.19 39.42 REMARK 500 HIS A 64 40.05 -159.50 REMARK 500 TYR A 65 -50.75 -121.35 REMARK 500 ASP A 77 108.58 -47.25 REMARK 500 ALA A 79 -6.92 77.59 REMARK 500 HIS A 93 23.90 46.74 REMARK 500 CYS A 124 -160.06 -127.69 REMARK 500 LYS A 128 -102.17 -94.96 REMARK 500 THR A 160 -131.70 53.92 REMARK 500 ARG A 161 -34.32 -169.98 REMARK 500 THR A 167 -61.06 -92.77 REMARK 500 LYS A 197 -178.03 178.98 REMARK 500 THR A 202 -161.86 -118.42 REMARK 500 THR A 210 -147.54 -134.82 REMARK 500 LEU A 220 -119.88 49.63 REMARK 500 LYS A 223 94.81 -65.27 REMARK 500 ASP A 236 -117.15 53.78 REMARK 500 PRO A 281 119.25 -34.79 REMARK 500 ASP A 331 72.73 -105.23 REMARK 500 ASN A 340 -8.08 74.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 DBREF 7JVX A 1 422 UNP P60484 PTEN_HUMAN 1 403 SEQADV 7JVX THR A 381 UNP P60484 INSERTION SEQADV 7JVX GLY A 382 UNP P60484 INSERTION SEQADV 7JVX GLY A 383 UNP P60484 INSERTION SEQADV 7JVX GLY A 384 UNP P60484 INSERTION SEQADV 7JVX SER A 385 UNP P60484 INSERTION SEQADV 7JVX GLY A 386 UNP P60484 INSERTION SEQADV 7JVX GLY A 387 UNP P60484 INSERTION SEQADV 7JVX THR A 388 UNP P60484 INSERTION SEQADV 7JVX GLY A 389 UNP P60484 INSERTION SEQADV 7JVX GLY A 390 UNP P60484 INSERTION SEQADV 7JVX GLY A 391 UNP P60484 INSERTION SEQADV 7JVX SER A 392 UNP P60484 INSERTION SEQADV 7JVX GLY A 393 UNP P60484 INSERTION SEQADV 7JVX GLY A 394 UNP P60484 INSERTION SEQADV 7JVX THR A 395 UNP P60484 INSERTION SEQADV 7JVX GLY A 396 UNP P60484 INSERTION SEQADV 7JVX GLY A 397 UNP P60484 INSERTION SEQADV 7JVX GLY A 398 UNP P60484 INSERTION SEQADV 7JVX CYS A 399 UNP P60484 INSERTION SEQRES 1 A 422 MET THR ALA ILE ILE LYS GLU ILE VAL SER ARG ASN LYS SEQRES 2 A 422 ARG ARG TYR GLN GLU ASP GLY PHE ASP LEU ASP LEU THR SEQRES 3 A 422 TYR ILE TYR PRO ASN ILE ILE ALA MET GLY PHE PRO ALA SEQRES 4 A 422 GLU ARG LEU GLU GLY VAL TYR ARG ASN ASN ILE ASP ASP SEQRES 5 A 422 VAL VAL ARG PHE LEU ASP SER LYS HIS LYS ASN HIS TYR SEQRES 6 A 422 LYS ILE TYR ASN LEU CYS ALA GLU ARG HIS TYR ASP THR SEQRES 7 A 422 ALA LYS PHE ASN CYS ARG VAL ALA GLN TYR PRO PHE GLU SEQRES 8 A 422 ASP HIS ASN PRO PRO GLN LEU GLU LEU ILE LYS PRO PHE SEQRES 9 A 422 CYS GLU ASP LEU ASP GLN TRP LEU SER GLU ASP ASP ASN SEQRES 10 A 422 HIS VAL ALA ALA ILE HIS CYS LYS ALA GLY LYS GLY ARG SEQRES 11 A 422 THR GLY VAL MET ILE CYS ALA TYR LEU LEU HIS ARG GLY SEQRES 12 A 422 LYS PHE LEU LYS ALA GLN GLU ALA LEU ASP PHE TYR GLY SEQRES 13 A 422 GLU VAL ARG THR ARG ASP LYS LYS GLY VAL THR ILE PRO SEQRES 14 A 422 SER GLN ARG ARG TYR VAL TYR TYR TYR SER TYR LEU LEU SEQRES 15 A 422 LYS ASN HIS LEU ASP TYR ARG PRO VAL ALA LEU LEU PHE SEQRES 16 A 422 HIS LYS MET MET PHE GLU THR ILE PRO MET PHE SER GLY SEQRES 17 A 422 GLY THR CYS ASN PRO GLN PHE VAL VAL CYS GLN LEU LYS SEQRES 18 A 422 VAL LYS ILE TYR SER SER ASN SER GLY PRO THR ARG ARG SEQRES 19 A 422 GLU ASP LYS PHE MET TYR PHE GLU PHE PRO GLN PRO LEU SEQRES 20 A 422 PRO VAL CYS GLY ASP ILE LYS VAL GLU PHE PHE HIS LYS SEQRES 21 A 422 GLN ASN LYS MET LEU LYS LYS ASP LYS MET PHE HIS PHE SEQRES 22 A 422 TRP VAL ASN THR PHE PHE ILE PRO GLY PRO GLU GLU THR SEQRES 23 A 422 SER GLU LYS VAL GLU ASN GLY SER LEU CYS ASP GLN GLU SEQRES 24 A 422 ILE ASP SER ILE CYS SER ILE GLU ARG ALA ASP ASN ASP SEQRES 25 A 422 LYS GLU TYR LEU VAL LEU THR LEU THR LYS ASN ASP LEU SEQRES 26 A 422 ASP LYS ALA ASN LYS ASP LYS ALA ASN ARG TYR PHE SER SEQRES 27 A 422 PRO ASN PHE LYS VAL LYS LEU TYR PHE THR LYS THR VAL SEQRES 28 A 422 GLU GLU PRO SER ASN PRO GLU ALA SER SER SER THR SER SEQRES 29 A 422 VAL THR PRO ASP VAL SER ASP ASN GLU PRO ASP HIS TYR SEQRES 30 A 422 ARG TYR SER THR GLY GLY GLY SER GLY GLY THR GLY GLY SEQRES 31 A 422 GLY SER GLY GLY THR GLY GLY GLY CYS ASP THR THR ASP SEQRES 32 A 422 SER ASP PRO GLU ASN GLU PRO PHE ASP GLU ASP GLN HIS SEQRES 33 A 422 THR GLN ILE THR LYS VAL HET PO4 A 501 5 HET PO4 A 502 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 2(O4 P 3-) HELIX 1 AA1 GLU A 7 ASN A 12 1 6 HELIX 2 AA2 ASN A 49 HIS A 61 1 13 HELIX 3 AA3 GLN A 97 ASP A 115 1 19 HELIX 4 AA4 LYS A 128 GLY A 143 1 16 HELIX 5 AA5 LYS A 147 ARG A 159 1 13 HELIX 6 AA6 ILE A 168 HIS A 185 1 18 HELIX 7 AA7 ASN A 323 LEU A 325 5 3 HELIX 8 AA8 LYS A 327 ASP A 331 5 5 SHEET 1 AA1 5 LEU A 25 TYR A 27 0 SHEET 2 AA1 5 ILE A 32 GLY A 36 -1 O ALA A 34 N THR A 26 SHEET 3 AA1 5 ALA A 120 CYS A 124 1 O ALA A 120 N ILE A 33 SHEET 4 AA1 5 TYR A 68 CYS A 71 1 N TYR A 68 O HIS A 123 SHEET 5 AA1 5 ALA A 86 PHE A 90 1 O ALA A 86 N ASN A 69 SHEET 1 AA2 5 ARG A 233 GLU A 235 0 SHEET 2 AA2 5 PHE A 238 CYS A 250 -1 O TYR A 240 N ARG A 233 SHEET 3 AA2 5 ALA A 192 PHE A 200 -1 N MET A 198 O PHE A 241 SHEET 4 AA2 5 LYS A 342 LYS A 349 -1 O LYS A 344 N MET A 199 SHEET 5 AA2 5 LEU A 316 THR A 321 -1 N LEU A 316 O PHE A 347 SHEET 1 AA3 4 VAL A 222 SER A 226 0 SHEET 2 AA3 4 PRO A 213 GLN A 219 -1 N VAL A 217 O TYR A 225 SHEET 3 AA3 4 ASP A 252 LYS A 260 -1 O LYS A 254 N CYS A 218 SHEET 4 AA3 4 LYS A 267 ASN A 276 -1 O PHE A 271 N PHE A 257 SITE 1 AC1 2 GLU A 73 ARG A 74 SITE 1 AC2 2 GLU A 73 HIS A 75 CRYST1 113.390 113.390 57.900 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008819 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017271 0.00000