HEADER IMMUNE SYSTEM 25-AUG-20 7JWI TITLE CRYSTAL STRUCTURE OF B17.R2 TCR IN COMPLEX WITH H2D-B-NP366 COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-2D(B); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: NUCLEOPROTEIN; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: NP-366 EPITOPE (UNP RESIDUES 366-374); COMPND 14 SYNONYM: NUCLEOCAPSID PROTEIN,PROTEIN N; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: B17.R2 TCR ALPHA CHAIN; COMPND 18 CHAIN: D; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: B17.R2 TCR BETA CHAIN; COMPND 22 CHAIN: E; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 20 ORGANISM_TAXID: 11320; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_COMMON: MOUSE; SOURCE 24 ORGANISM_TAXID: 10090; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 26 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 28 MOL_ID: 5; SOURCE 29 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 30 ORGANISM_COMMON: MOUSE; SOURCE 31 ORGANISM_TAXID: 10090; SOURCE 32 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TCR, MHC, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.FARENC,J.ROSSJOHN REVDAT 2 18-OCT-23 7JWI 1 REMARK REVDAT 1 07-JUL-21 7JWI 0 JRNL AUTH P.ZAREIE,C.SZETO,C.FARENC,S.D.GUNASINGHE,E.M.KOLAWOLE, JRNL AUTH 2 A.NGUYEN,C.BLYTH,X.Y.X.SNG,J.LI,C.M.JONES,A.J.FULCHER, JRNL AUTH 3 J.R.JACOBS,Q.WEI,L.WOJCIECH,J.PETERSEN,N.R.J.GASCOIGNE, JRNL AUTH 4 B.D.EVAVOLD,K.GAUS,S.GRAS,J.ROSSJOHN,N.L.LA GRUTA JRNL TITL CANONICAL T CELL RECEPTOR DOCKING ON PEPTIDE-MHC IS JRNL TITL 2 ESSENTIAL FOR T CELL SIGNALING. JRNL REF SCIENCE V. 372 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 34083463 JRNL DOI 10.1126/SCIENCE.ABE9124 REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1412 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 530 REMARK 3 BIN R VALUE (WORKING SET) : 0.2964 REMARK 3 BIN FREE R VALUE : 0.3139 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.86 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 33 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6706 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 27.66620 REMARK 3 B22 (A**2) : -32.67880 REMARK 3 B33 (A**2) : 5.01260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.490 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XFIT REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28123 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.020 REMARK 200 RESOLUTION RANGE LOW (A) : 44.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.13 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5SWZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M POTASSIUM/SODIUM REMARK 280 TARTRATE, 0.1 M BIS-TRIS PROPANE, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.83400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.49850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.82450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.83400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.49850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.82450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.83400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.49850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.82450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.83400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.49850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.82450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 ALA A -21 REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 THR A -16 REMARK 465 LEU A -15 REMARK 465 LEU A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 LEU A -11 REMARK 465 ALA A -10 REMARK 465 ALA A -9 REMARK 465 ALA A -8 REMARK 465 LEU A -7 REMARK 465 ALA A -6 REMARK 465 PRO A -5 REMARK 465 THR A -4 REMARK 465 GLN A -3 REMARK 465 THR A -2 REMARK 465 ARG A -1 REMARK 465 ALA A 0 REMARK 465 PRO A 278 REMARK 465 SER A 279 REMARK 465 THR A 280 REMARK 465 ASP A 281 REMARK 465 SER A 282 REMARK 465 TYR A 283 REMARK 465 MET A 284 REMARK 465 VAL A 285 REMARK 465 ILE A 286 REMARK 465 VAL A 287 REMARK 465 ALA A 288 REMARK 465 VAL A 289 REMARK 465 LEU A 290 REMARK 465 GLY A 291 REMARK 465 VAL A 292 REMARK 465 LEU A 293 REMARK 465 GLY A 294 REMARK 465 ALA A 295 REMARK 465 MET A 296 REMARK 465 ALA A 297 REMARK 465 ILE A 298 REMARK 465 ILE A 299 REMARK 465 GLY A 300 REMARK 465 ALA A 301 REMARK 465 VAL A 302 REMARK 465 VAL A 303 REMARK 465 ALA A 304 REMARK 465 PHE A 305 REMARK 465 VAL A 306 REMARK 465 MET A 307 REMARK 465 LYS A 308 REMARK 465 ARG A 309 REMARK 465 ARG A 310 REMARK 465 ARG A 311 REMARK 465 ASN A 312 REMARK 465 THR A 313 REMARK 465 GLY A 314 REMARK 465 GLY A 315 REMARK 465 LYS A 316 REMARK 465 GLY A 317 REMARK 465 GLY A 318 REMARK 465 ASP A 319 REMARK 465 TYR A 320 REMARK 465 ALA A 321 REMARK 465 LEU A 322 REMARK 465 ALA A 323 REMARK 465 PRO A 324 REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 GLN A 327 REMARK 465 SER A 328 REMARK 465 SER A 329 REMARK 465 GLU A 330 REMARK 465 MET A 331 REMARK 465 SER A 332 REMARK 465 LEU A 333 REMARK 465 ARG A 334 REMARK 465 ASP A 335 REMARK 465 CYS A 336 REMARK 465 LYS A 337 REMARK 465 ALA A 338 REMARK 465 MET B 0 REMARK 465 PRO D 218 REMARK 465 GLU D 219 REMARK 465 SER D 220 REMARK 465 SER D 221 REMARK 465 ASP E 1 REMARK 465 THR E 2 REMARK 465 ASP E 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER D 217 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 33 -35.48 -134.11 REMARK 500 TYR A 123 -73.66 -102.11 REMARK 500 ALA A 136 -70.25 -77.54 REMARK 500 LYS A 196 -139.34 57.65 REMARK 500 ASP A 212 98.52 -63.81 REMARK 500 GLN A 226 -2.67 64.30 REMARK 500 TRP B 60 -8.28 67.08 REMARK 500 MET C 6 -97.88 -84.51 REMARK 500 SER D 99 92.44 -61.51 REMARK 500 LYS D 143 -12.13 59.91 REMARK 500 ASP D 212 30.53 -95.87 REMARK 500 GLN E 25 -50.10 -124.90 REMARK 500 ASP E 58 -86.78 59.16 REMARK 500 SER E 99 90.93 -63.48 REMARK 500 LEU E 110 65.29 -111.52 REMARK 500 TRP E 252 -61.24 -101.24 REMARK 500 REMARK 500 REMARK: NULL DBREF 7JWI A -23 338 UNP P01899 HA11_MOUSE 1 362 DBREF 7JWI B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7JWI C 1 9 UNP Q9Q0U8 NCAP_I96A0 366 374 DBREF 7JWI D 1 221 PDB 7JWI 7JWI 1 221 DBREF 7JWI E 1 256 PDB 7JWI 7JWI 1 256 SEQADV 7JWI MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 362 MET GLY ALA MET ALA PRO ARG THR LEU LEU LEU LEU LEU SEQRES 2 A 362 ALA ALA ALA LEU ALA PRO THR GLN THR ARG ALA GLY PRO SEQRES 3 A 362 HIS SER MET ARG TYR PHE GLU THR ALA VAL SER ARG PRO SEQRES 4 A 362 GLY LEU GLU GLU PRO ARG TYR ILE SER VAL GLY TYR VAL SEQRES 5 A 362 ASP ASN LYS GLU PHE VAL ARG PHE ASP SER ASP ALA GLU SEQRES 6 A 362 ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP MET GLU GLN SEQRES 7 A 362 GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN LYS ALA SEQRES 8 A 362 LYS GLY GLN GLU GLN TRP PHE ARG VAL SER LEU ARG ASN SEQRES 9 A 362 LEU LEU GLY TYR TYR ASN GLN SER ALA GLY GLY SER HIS SEQRES 10 A 362 THR LEU GLN GLN MET SER GLY CYS ASP LEU GLY SER ASP SEQRES 11 A 362 TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE ALA TYR GLU SEQRES 12 A 362 GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU LYS THR SEQRES 13 A 362 TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR ARG ARG SEQRES 14 A 362 LYS TRP GLU GLN SER GLY ALA ALA GLU HIS TYR LYS ALA SEQRES 15 A 362 TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU HIS ARG TYR SEQRES 16 A 362 LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR ASP SER SEQRES 17 A 362 PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SER LYS GLY SEQRES 18 A 362 GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE TYR PRO SEQRES 19 A 362 ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY GLU GLU SEQRES 20 A 362 LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG PRO ALA SEQRES 21 A 362 GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL VAL VAL SEQRES 22 A 362 PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG VAL TYR SEQRES 23 A 362 HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG TRP GLU SEQRES 24 A 362 PRO PRO PRO SER THR ASP SER TYR MET VAL ILE VAL ALA SEQRES 25 A 362 VAL LEU GLY VAL LEU GLY ALA MET ALA ILE ILE GLY ALA SEQRES 26 A 362 VAL VAL ALA PHE VAL MET LYS ARG ARG ARG ASN THR GLY SEQRES 27 A 362 GLY LYS GLY GLY ASP TYR ALA LEU ALA PRO GLY SER GLN SEQRES 28 A 362 SER SER GLU MET SER LEU ARG ASP CYS LYS ALA SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 ALA SER ASN GLU ASN MET GLU THR MET SEQRES 1 D 207 GLN GLN GLN VAL ARG GLN SER PRO GLN SER LEU THR VAL SEQRES 2 D 207 TRP GLU GLY GLU THR ALA ILE LEU ASN CYS SER TYR GLU SEQRES 3 D 207 ASP SER THR PHE ASN TYR PHE PRO TRP TYR GLN GLN PHE SEQRES 4 D 207 PRO GLY GLU GLY PRO ALA LEU LEU ILE SER ILE ARG SER SEQRES 5 D 207 VAL SER ASP LYS LYS GLU ASP GLY ARG PHE THR ILE PHE SEQRES 6 D 207 PHE ASN LYS ARG GLU LYS LYS LEU SER LEU HIS ILE THR SEQRES 7 D 207 ASP SER GLN PRO GLY ASP SER ALA THR TYR PHE CYS ALA SEQRES 8 D 207 ALA SER GLU THR SER GLY SER TRP GLN LEU ILE PHE GLY SEQRES 9 D 207 SER GLY THR THR VAL SER VAL SER PRO ASN ILE GLN ASN SEQRES 10 D 207 PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SEQRES 11 D 207 SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER SEQRES 12 D 207 GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR SEQRES 13 D 207 ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP SEQRES 14 D 207 PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER SEQRES 15 D 207 ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE SEQRES 16 D 207 PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 E 243 ASP THR THR VAL LYS GLN ASN PRO ARG TYR LYS LEU ALA SEQRES 2 E 243 ARG VAL GLY LYS PRO VAL ASN LEU ILE CYS SER GLN THR SEQRES 3 E 243 MET ASN HIS ASP THR MET TYR TRP TYR GLN LYS LYS PRO SEQRES 4 E 243 ASN GLN ALA PRO LYS LEU LEU LEU PHE TYR TYR ASP LYS SEQRES 5 E 243 ILE LEU ASN ARG GLU ALA ASP THR PHE GLU LYS PHE GLN SEQRES 6 E 243 SER SER ARG PRO ASN ASN SER PHE CYS SER LEU TYR ILE SEQRES 7 E 243 GLY SER ALA GLY LEU GLU TYR SER ALA MET TYR LEU CYS SEQRES 8 E 243 ALA SER SER ARG ASP LEU GLY ARG ASP THR GLN TYR PHE SEQRES 9 E 243 GLY PRO GLY THR ARG LEU THR VAL LEU GLU ASP LEU LYS SEQRES 10 E 243 ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER SEQRES 11 E 243 GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL SEQRES 12 E 243 CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SEQRES 13 E 243 SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL SEQRES 14 E 243 CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU SEQRES 15 E 243 ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SEQRES 16 E 243 SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG SEQRES 17 E 243 CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU SEQRES 18 E 243 TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SEQRES 19 E 243 SER ALA GLU ALA TRP GLY ARG ALA ASP HET EDO E 301 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *90(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 GLY A 56 ASN A 86 1 31 HELIX 3 AA3 ASP A 137 GLY A 151 1 15 HELIX 4 AA4 GLY A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 ASN A 174 1 13 HELIX 6 AA6 GLY A 175 LEU A 180 1 6 HELIX 7 AA7 GLN D 95 SER D 99 5 5 HELIX 8 AA8 ARG D 180 ASP D 183 5 4 HELIX 9 AA9 GLY E 95 SER E 99 5 5 HELIX 10 AB1 SER E 143 THR E 150 1 8 HELIX 11 AB2 ALA E 210 ASN E 215 1 6 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 GLU A 32 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLY A 26 O VAL A 34 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 LEU A 103 -1 O CYS A 101 N MET A 5 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O TYR A 113 N GLY A 100 SHEET 7 AA1 8 ARG A 121 LEU A 126 -1 O LEU A 126 N LEU A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O VAL A 249 N VAL A 199 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O VAL A 249 N VAL A 199 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 GLU A 223 0 SHEET 2 AA4 4 ILE A 213 LEU A 219 -1 N LEU A 219 O GLU A 222 SHEET 3 AA4 4 THR A 258 HIS A 263 -1 O TYR A 262 N THR A 214 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 62 N PHE B 30 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 62 N PHE B 30 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 5 VAL D 4 SER D 7 0 SHEET 2 AA8 5 ALA D 19 TYR D 25 -1 O SER D 24 N ARG D 5 SHEET 3 AA8 5 LYS D 86 ILE D 91 -1 O LEU D 87 N CYS D 23 SHEET 4 AA8 5 PHE D 76 ASN D 81 -1 N THR D 77 O HIS D 90 SHEET 5 AA8 5 LYS D 62 ASP D 68 -1 N ASP D 68 O PHE D 76 SHEET 1 AA9 5 SER D 10 TRP D 14 0 SHEET 2 AA9 5 THR D 121 SER D 126 1 O SER D 126 N VAL D 13 SHEET 3 AA9 5 THR D 101 GLU D 108 -1 N TYR D 102 O THR D 121 SHEET 4 AA9 5 TRP D 41 GLN D 44 -1 N TYR D 42 O PHE D 103 SHEET 5 AA9 5 ALA D 51 ILE D 54 -1 O LEU D 53 N TRP D 41 SHEET 1 AB1 3 PHE D 30 TYR D 32 0 SHEET 2 AB1 3 THR D 101 GLU D 108 -1 O SER D 107 N ASN D 31 SHEET 3 AB1 3 ILE D 116 PHE D 117 -1 O ILE D 116 N ALA D 106 SHEET 1 AB2 4 ALA D 135 LEU D 139 0 SHEET 2 AB2 4 SER D 148 PHE D 155 -1 O LEU D 151 N TYR D 137 SHEET 3 AB2 4 PHE D 184 SER D 193 -1 O ALA D 191 N CYS D 150 SHEET 4 AB2 4 TYR D 170 ILE D 171 -1 N TYR D 170 O TRP D 192 SHEET 1 AB3 4 ALA D 135 LEU D 139 0 SHEET 2 AB3 4 SER D 148 PHE D 155 -1 O LEU D 151 N TYR D 137 SHEET 3 AB3 4 PHE D 184 SER D 193 -1 O ALA D 191 N CYS D 150 SHEET 4 AB3 4 CYS D 175 MET D 179 -1 N MET D 179 O PHE D 184 SHEET 1 AB4 6 TYR E 10 ARG E 14 0 SHEET 2 AB4 6 THR E 121 LEU E 126 1 O ARG E 122 N LYS E 11 SHEET 3 AB4 6 ALA E 100 SER E 107 -1 N TYR E 102 O THR E 121 SHEET 4 AB4 6 THR E 31 LYS E 44 -1 N LYS E 44 O MET E 101 SHEET 5 AB4 6 LYS E 51 TYR E 57 -1 O LEU E 53 N TRP E 41 SHEET 6 AB4 6 ILE E 60 ARG E 67 -1 O ILE E 60 N TYR E 57 SHEET 1 AB5 4 TYR E 10 ARG E 14 0 SHEET 2 AB5 4 THR E 121 LEU E 126 1 O ARG E 122 N LYS E 11 SHEET 3 AB5 4 ALA E 100 SER E 107 -1 N TYR E 102 O THR E 121 SHEET 4 AB5 4 TYR E 116 PHE E 117 -1 O TYR E 116 N SER E 106 SHEET 1 AB6 3 VAL E 19 SER E 24 0 SHEET 2 AB6 3 PHE E 86 ILE E 91 -1 O ILE E 91 N VAL E 19 SHEET 3 AB6 3 GLN E 77 SER E 79 -1 N GLN E 77 O TYR E 90 SHEET 1 AB7 4 GLU E 136 PHE E 140 0 SHEET 2 AB7 4 LYS E 152 PHE E 162 -1 O THR E 160 N GLU E 136 SHEET 3 AB7 4 TYR E 200 SER E 209 -1 O TYR E 200 N PHE E 162 SHEET 4 AB7 4 VAL E 182 THR E 184 -1 N CYS E 183 O ARG E 205 SHEET 1 AB8 4 GLU E 136 PHE E 140 0 SHEET 2 AB8 4 LYS E 152 PHE E 162 -1 O THR E 160 N GLU E 136 SHEET 3 AB8 4 TYR E 200 SER E 209 -1 O TYR E 200 N PHE E 162 SHEET 4 AB8 4 LEU E 189 LYS E 190 -1 N LEU E 189 O ALA E 201 SHEET 1 AB9 4 LYS E 176 VAL E 178 0 SHEET 2 AB9 4 VAL E 167 VAL E 173 -1 N VAL E 173 O LYS E 176 SHEET 3 AB9 4 PHE E 220 PHE E 226 -1 O ARG E 221 N TRP E 172 SHEET 4 AB9 4 ILE E 246 ALA E 251 -1 O ALA E 251 N PHE E 220 SSBOND 1 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 2 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 3 CYS D 23 CYS D 104 1555 1555 2.04 SSBOND 4 CYS D 150 CYS D 200 1555 1555 2.03 SSBOND 5 CYS D 175 CYS E 183 1555 1555 2.03 SSBOND 6 CYS E 23 CYS E 104 1555 1555 2.03 SSBOND 7 CYS E 157 CYS E 222 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 0.83 CISPEP 2 HIS B 31 PRO B 32 0 3.57 CISPEP 3 SER D 7 PRO D 8 0 -0.53 CISPEP 4 ASN E 7 PRO E 8 0 0.53 CISPEP 5 TYR E 163 PRO E 164 0 2.12 CRYST1 91.668 140.997 217.649 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010909 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004595 0.00000