HEADER IMMUNE SYSTEM 25-AUG-20 7JWJ TITLE CRYSTAL STRUCTURE OF B17-C1 TCR-H2DB COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-2D(B); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: NUCLEOPROTEIN; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: NP-366 EPITOPE (UNP RESIDUES 366-374); COMPND 14 SYNONYM: NUCLEOCAPSID PROTEIN,PROTEIN N; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: B17.C1 TCR ALPHA CHAIN; COMPND 18 CHAIN: D; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: B17.C1 TCR BETA CHAIN; COMPND 22 CHAIN: E; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: B2M; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 18 ORGANISM_TAXID: 11320; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 21 ORGANISM_COMMON: MOUSE; SOURCE 22 ORGANISM_TAXID: 10090; SOURCE 23 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 24 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 26 MOL_ID: 5; SOURCE 27 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 28 ORGANISM_COMMON: MOUSE; SOURCE 29 ORGANISM_TAXID: 10090; SOURCE 30 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 31 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS TCR, MHC, COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.FARENC,J.ROSSJOHN,S.GRAS,C.SZETO REVDAT 4 23-OCT-24 7JWJ 1 REMARK REVDAT 3 24-APR-24 7JWJ 1 COMPND REVDAT 2 18-OCT-23 7JWJ 1 REMARK REVDAT 1 07-JUL-21 7JWJ 0 JRNL AUTH P.ZAREIE,C.SZETO,C.FARENC,S.D.GUNASINGHE,E.M.KOLAWOLE, JRNL AUTH 2 A.NGUYEN,C.BLYTH,X.Y.X.SNG,J.LI,C.M.JONES,A.J.FULCHER, JRNL AUTH 3 J.R.JACOBS,Q.WEI,L.WOJCIECH,J.PETERSEN,N.R.J.GASCOIGNE, JRNL AUTH 4 B.D.EVAVOLD,K.GAUS,S.GRAS,J.ROSSJOHN,N.L.LA GRUTA JRNL TITL CANONICAL T CELL RECEPTOR DOCKING ON PEPTIDE-MHC IS JRNL TITL 2 ESSENTIAL FOR T CELL SIGNALING. JRNL REF SCIENCE V. 372 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 34083463 JRNL DOI 10.1126/SCIENCE.ABE9124 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (20-MAY-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 19231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.277 REMARK 3 R VALUE (WORKING SET) : 0.276 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 952 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.53 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 394 REMARK 3 BIN R VALUE (WORKING SET) : 0.2853 REMARK 3 BIN FREE R VALUE : 0.4037 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 16 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 123.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 28.73110 REMARK 3 B22 (A**2) : -30.16570 REMARK 3 B33 (A**2) : 1.43460 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.630 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.570 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.871 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6732 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9133 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3076 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1147 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6732 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 849 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4117 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 0.61 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.87 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.95 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19231 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 47.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5SWZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 0.2 M POTASSIUM REMARK 280 THIOCYANIDE, 4% ETHYLENE GLYCOL, 0.1 M BIS-TRIS PROPANE, PH 7.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.17800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.17800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.88450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 112.31800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.88450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 112.31800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.17800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.88450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 112.31800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.17800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.88450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 112.31800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 ALA A -21 REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 THR A -16 REMARK 465 LEU A -15 REMARK 465 LEU A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 LEU A -11 REMARK 465 ALA A -10 REMARK 465 ALA A -9 REMARK 465 ALA A -8 REMARK 465 LEU A -7 REMARK 465 ALA A -6 REMARK 465 PRO A -5 REMARK 465 THR A -4 REMARK 465 GLN A -3 REMARK 465 THR A -2 REMARK 465 ARG A -1 REMARK 465 ALA A 0 REMARK 465 GLY A 1 REMARK 465 GLU A 223 REMARK 465 LEU A 224 REMARK 465 THR A 225 REMARK 465 GLN A 226 REMARK 465 GLY A 252 REMARK 465 LYS A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 275 REMARK 465 PRO A 276 REMARK 465 PRO A 277 REMARK 465 PRO A 278 REMARK 465 SER A 279 REMARK 465 THR A 280 REMARK 465 ASP A 281 REMARK 465 SER A 282 REMARK 465 TYR A 283 REMARK 465 MET A 284 REMARK 465 VAL A 285 REMARK 465 ILE A 286 REMARK 465 VAL A 287 REMARK 465 ALA A 288 REMARK 465 VAL A 289 REMARK 465 LEU A 290 REMARK 465 GLY A 291 REMARK 465 VAL A 292 REMARK 465 LEU A 293 REMARK 465 GLY A 294 REMARK 465 ALA A 295 REMARK 465 MET A 296 REMARK 465 ALA A 297 REMARK 465 ILE A 298 REMARK 465 ILE A 299 REMARK 465 GLY A 300 REMARK 465 ALA A 301 REMARK 465 VAL A 302 REMARK 465 VAL A 303 REMARK 465 ALA A 304 REMARK 465 PHE A 305 REMARK 465 VAL A 306 REMARK 465 MET A 307 REMARK 465 LYS A 308 REMARK 465 ARG A 309 REMARK 465 ARG A 310 REMARK 465 ARG A 311 REMARK 465 ASN A 312 REMARK 465 THR A 313 REMARK 465 GLY A 314 REMARK 465 GLY A 315 REMARK 465 LYS A 316 REMARK 465 GLY A 317 REMARK 465 GLY A 318 REMARK 465 ASP A 319 REMARK 465 TYR A 320 REMARK 465 ALA A 321 REMARK 465 LEU A 322 REMARK 465 ALA A 323 REMARK 465 PRO A 324 REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 GLN A 327 REMARK 465 SER A 328 REMARK 465 SER A 329 REMARK 465 GLU A 330 REMARK 465 MET A 331 REMARK 465 SER A 332 REMARK 465 LEU A 333 REMARK 465 ARG A 334 REMARK 465 ASP A 335 REMARK 465 CYS A 336 REMARK 465 LYS A 337 REMARK 465 ALA A 338 REMARK 465 MET B -19 REMARK 465 ALA B -18 REMARK 465 ARG B -17 REMARK 465 SER B -16 REMARK 465 VAL B -15 REMARK 465 THR B -14 REMARK 465 LEU B -13 REMARK 465 VAL B -12 REMARK 465 PHE B -11 REMARK 465 LEU B -10 REMARK 465 VAL B -9 REMARK 465 LEU B -8 REMARK 465 VAL B -7 REMARK 465 SER B -6 REMARK 465 LEU B -5 REMARK 465 THR B -4 REMARK 465 GLY B -3 REMARK 465 LEU B -2 REMARK 465 TYR B -1 REMARK 465 ALA B 0 REMARK 465 ILE B 1 REMARK 465 GLN B 2 REMARK 465 GLY D 0 REMARK 465 ASP D 1 REMARK 465 PRO D 216 REMARK 465 SER D 217 REMARK 465 PRO D 218 REMARK 465 GLU D 219 REMARK 465 SER D 220 REMARK 465 SER D 221 REMARK 465 ASP E 1 REMARK 465 ASP E 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE D 215 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 82.34 76.12 REMARK 500 TYR A 123 -69.91 -124.67 REMARK 500 LYS A 131 -40.74 -135.61 REMARK 500 GLU A 163 -38.84 -38.54 REMARK 500 PRO B 15 107.06 -55.32 REMARK 500 PRO B 90 108.88 -57.61 REMARK 500 MET C 6 -77.59 -101.76 REMARK 500 SER D 58 127.17 174.13 REMARK 500 ASP D 94 79.55 57.92 REMARK 500 LYS D 114 -58.82 -19.11 REMARK 500 SER D 144 -23.85 73.62 REMARK 500 SER D 145 72.87 53.69 REMARK 500 ASP D 146 -40.34 -132.70 REMARK 500 ASP D 154 62.77 60.54 REMARK 500 MET D 182 95.83 48.50 REMARK 500 PHE D 184 26.96 -75.69 REMARK 500 LYS D 185 102.90 56.09 REMARK 500 ALA D 203 37.63 -85.59 REMARK 500 PHE D 204 48.91 -104.04 REMARK 500 GLU D 211 -68.16 -126.91 REMARK 500 ASN E 28 54.81 -91.24 REMARK 500 ASP E 58 74.21 54.97 REMARK 500 ARG E 67 39.63 -92.29 REMARK 500 ASP E 70 81.89 70.87 REMARK 500 ASN E 114 42.00 -108.49 REMARK 500 HIS E 168 59.74 -113.78 REMARK 500 REMARK 500 REMARK: NULL DBREF 7JWJ A -23 338 UNP P01899 HA11_MOUSE 1 362 DBREF 7JWJ B -19 99 UNP P01887 B2MG_MOUSE 1 119 DBREF 7JWJ C 1 9 UNP Q9Q0U8 NCAP_I96A0 366 374 DBREF 7JWJ D 0 221 PDB 7JWJ 7JWJ 0 221 DBREF 7JWJ E 1 258 PDB 7JWJ 7JWJ 1 258 SEQRES 1 A 362 MET GLY ALA MET ALA PRO ARG THR LEU LEU LEU LEU LEU SEQRES 2 A 362 ALA ALA ALA LEU ALA PRO THR GLN THR ARG ALA GLY PRO SEQRES 3 A 362 HIS SER MET ARG TYR PHE GLU THR ALA VAL SER ARG PRO SEQRES 4 A 362 GLY LEU GLU GLU PRO ARG TYR ILE SER VAL GLY TYR VAL SEQRES 5 A 362 ASP ASN LYS GLU PHE VAL ARG PHE ASP SER ASP ALA GLU SEQRES 6 A 362 ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP MET GLU GLN SEQRES 7 A 362 GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN LYS ALA SEQRES 8 A 362 LYS GLY GLN GLU GLN TRP PHE ARG VAL SER LEU ARG ASN SEQRES 9 A 362 LEU LEU GLY TYR TYR ASN GLN SER ALA GLY GLY SER HIS SEQRES 10 A 362 THR LEU GLN GLN MET SER GLY CYS ASP LEU GLY SER ASP SEQRES 11 A 362 TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE ALA TYR GLU SEQRES 12 A 362 GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU LYS THR SEQRES 13 A 362 TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR ARG ARG SEQRES 14 A 362 LYS TRP GLU GLN SER GLY ALA ALA GLU HIS TYR LYS ALA SEQRES 15 A 362 TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU HIS ARG TYR SEQRES 16 A 362 LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR ASP SER SEQRES 17 A 362 PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SER LYS GLY SEQRES 18 A 362 GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE TYR PRO SEQRES 19 A 362 ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY GLU GLU SEQRES 20 A 362 LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG PRO ALA SEQRES 21 A 362 GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL VAL VAL SEQRES 22 A 362 PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG VAL TYR SEQRES 23 A 362 HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG TRP GLU SEQRES 24 A 362 PRO PRO PRO SER THR ASP SER TYR MET VAL ILE VAL ALA SEQRES 25 A 362 VAL LEU GLY VAL LEU GLY ALA MET ALA ILE ILE GLY ALA SEQRES 26 A 362 VAL VAL ALA PHE VAL MET LYS ARG ARG ARG ASN THR GLY SEQRES 27 A 362 GLY LYS GLY GLY ASP TYR ALA LEU ALA PRO GLY SER GLN SEQRES 28 A 362 SER SER GLU MET SER LEU ARG ASP CYS LYS ALA SEQRES 1 B 119 MET ALA ARG SER VAL THR LEU VAL PHE LEU VAL LEU VAL SEQRES 2 B 119 SER LEU THR GLY LEU TYR ALA ILE GLN LYS THR PRO GLN SEQRES 3 B 119 ILE GLN VAL TYR SER ARG HIS PRO PRO GLU ASN GLY LYS SEQRES 4 B 119 PRO ASN ILE LEU ASN CYS TYR VAL THR GLN PHE HIS PRO SEQRES 5 B 119 PRO HIS ILE GLU ILE GLN MET LEU LYS ASN GLY LYS LYS SEQRES 6 B 119 ILE PRO LYS VAL GLU MET SER ASP MET SER PHE SER LYS SEQRES 7 B 119 ASP TRP SER PHE TYR ILE LEU ALA HIS THR GLU PHE THR SEQRES 8 B 119 PRO THR GLU THR ASP THR TYR ALA CYS ARG VAL LYS HIS SEQRES 9 B 119 ALA SER MET ALA GLU PRO LYS THR VAL TYR TRP ASP ARG SEQRES 10 B 119 ASP MET SEQRES 1 C 9 ALA SER ASN GLU ASN MET GLU THR MET SEQRES 1 D 204 GLY ASP GLN VAL GLU GLN SER PRO SER ALA LEU SER LEU SEQRES 2 D 204 HIS GLU GLY THR ASP SER ALA LEU ARG CYS ASN PHE THR SEQRES 3 D 204 THR THR MET ARG SER VAL GLN TRP PHE ARG GLN ASN SER SEQRES 4 D 204 ARG GLY SER LEU ILE SER LEU PHE TYR LEU ALA SER GLY SEQRES 5 D 204 THR LYS GLU ASN GLY ARG LEU LYS SER ALA PHE ASP SER SEQRES 6 D 204 LYS GLU ARG ARG TYR SER THR LEU HIS ILE ARG ASP ALA SEQRES 7 D 204 GLN LEU GLU ASP SER GLY THR TYR PHE CYS ALA ALA VAL SEQRES 8 D 204 THR GLY ASN THR GLY LYS LEU ILE PHE GLY LEU GLY THR SEQRES 9 D 204 THR LEU GLN VAL GLN PRO ASN ILE GLN ASN PRO ASP PRO SEQRES 10 D 204 ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SEQRES 11 D 204 SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN SEQRES 12 D 204 VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP SEQRES 13 D 204 LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SER SEQRES 14 D 204 ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA SEQRES 15 D 204 CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU ASP SEQRES 16 D 204 THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 E 245 ASP THR THR VAL LYS GLN ASN PRO ARG TYR LYS LEU ALA SEQRES 2 E 245 ARG VAL GLY LYS PRO VAL ASN LEU ILE CYS SER GLN THR SEQRES 3 E 245 MET ASN HIS ASP THR MET TYR TRP TYR GLN LYS LYS PRO SEQRES 4 E 245 ASN GLN ALA PRO LYS LEU LEU LEU PHE TYR TYR ASP LYS SEQRES 5 E 245 ILE LEU ASN ARG GLU ALA ASP THR PHE GLU LYS PHE GLN SEQRES 6 E 245 SER SER ARG PRO ASN ASN SER PHE CYS SER LEU TYR ILE SEQRES 7 E 245 GLY SER ALA GLY LEU GLU TYR SER ALA MET TYR LEU CYS SEQRES 8 E 245 ALA SER SER ARG GLY THR ILE HIS SER ASN THR GLU VAL SEQRES 9 E 245 PHE PHE GLY LYS GLY THR ARG LEU THR VAL VAL GLU ASP SEQRES 10 E 245 LEU LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU SEQRES 11 E 245 PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR SEQRES 12 E 245 LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL SEQRES 13 E 245 GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER SEQRES 14 E 245 GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO SEQRES 15 E 245 ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU SEQRES 16 E 245 ARG VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS SEQRES 17 E 245 PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN SEQRES 18 E 245 ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN SEQRES 19 E 245 ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP FORMUL 6 HOH *10(H2 O) HELIX 1 AA1 TRP A 51 GLU A 55 5 5 HELIX 2 AA2 GLY A 56 ASN A 86 1 31 HELIX 3 AA3 ASP A 137 GLY A 151 1 15 HELIX 4 AA4 GLY A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLN D 96 SER D 100 5 5 HELIX 7 AA7 GLY E 95 SER E 99 5 5 HELIX 8 AA8 SER E 145 THR E 152 1 8 HELIX 9 AA9 ALA E 212 ASN E 217 1 6 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 LYS A 31 PHE A 36 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O LYS A 31 SHEET 4 AA1 8 SER A 4 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 ASP A 102 -1 O LEU A 95 N ALA A 11 SHEET 6 AA1 8 ARG A 111 TYR A 118 -1 O GLN A 115 N MET A 98 SHEET 7 AA1 8 ARG A 121 LEU A 126 -1 O LEU A 126 N LEU A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 HIS A 192 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 MET A 228 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 AA3 4 HIS A 192 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 2 ILE A 213 TRP A 217 0 SHEET 2 AA4 2 CYS A 259 HIS A 263 -1 O TYR A 262 N THR A 214 SHEET 1 AA5 4 GLN B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O THR B 28 N GLN B 6 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O ILE B 64 N VAL B 27 SHEET 4 AA5 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AA6 4 GLN B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O THR B 28 N GLN B 6 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O ILE B 64 N VAL B 27 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 LYS B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AA7 4 TYR B 78 LYS B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 TYR B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 5 VAL D 3 SER D 6 0 SHEET 2 AA8 5 SER D 19 PHE D 25 -1 O ARG D 22 N SER D 6 SHEET 3 AA8 5 TYR D 87 ILE D 92 -1 O LEU D 90 N LEU D 21 SHEET 4 AA8 5 LEU D 76 ALA D 79 -1 N LYS D 77 O HIS D 91 SHEET 5 AA8 5 THR D 65 ASN D 68 -1 N LYS D 66 O SER D 78 SHEET 1 AA9 5 ALA D 10 HIS D 14 0 SHEET 2 AA9 5 THR D 121 GLN D 126 1 O GLN D 124 N LEU D 13 SHEET 3 AA9 5 GLY D 101 VAL D 108 -1 N GLY D 101 O LEU D 123 SHEET 4 AA9 5 SER D 38 GLN D 44 -1 N PHE D 42 O PHE D 104 SHEET 5 AA9 5 LEU D 50 LEU D 56 -1 O LEU D 56 N VAL D 39 SHEET 1 AB1 4 ALA D 10 HIS D 14 0 SHEET 2 AB1 4 THR D 121 GLN D 126 1 O GLN D 124 N LEU D 13 SHEET 3 AB1 4 GLY D 101 VAL D 108 -1 N GLY D 101 O LEU D 123 SHEET 4 AB1 4 LEU D 115 PHE D 117 -1 O ILE D 116 N ALA D 107 SHEET 1 AB2 4 ALA D 135 ARG D 140 0 SHEET 2 AB2 4 SER D 148 THR D 153 -1 O VAL D 149 N LEU D 139 SHEET 3 AB2 4 SER D 186 SER D 193 -1 O ALA D 191 N CYS D 150 SHEET 4 AB2 4 VAL D 169 ILE D 171 -1 N TYR D 170 O TRP D 192 SHEET 1 AB3 4 ALA D 135 ARG D 140 0 SHEET 2 AB3 4 SER D 148 THR D 153 -1 O VAL D 149 N LEU D 139 SHEET 3 AB3 4 SER D 186 SER D 193 -1 O ALA D 191 N CYS D 150 SHEET 4 AB3 4 CYS D 175 LEU D 177 -1 N CYS D 175 O SER D 188 SHEET 1 AB4 4 VAL E 4 LYS E 5 0 SHEET 2 AB4 4 VAL E 19 GLN E 25 -1 O SER E 24 N LYS E 5 SHEET 3 AB4 4 PHE E 86 ILE E 91 -1 O ILE E 91 N VAL E 19 SHEET 4 AB4 4 GLN E 77 SER E 79 -1 N GLN E 77 O TYR E 90 SHEET 1 AB5 6 TYR E 10 ARG E 14 0 SHEET 2 AB5 6 THR E 123 VAL E 128 1 O ARG E 124 N LYS E 11 SHEET 3 AB5 6 ALA E 100 SER E 107 -1 N TYR E 102 O THR E 123 SHEET 4 AB5 6 THR E 38 LYS E 44 -1 N TYR E 42 O LEU E 103 SHEET 5 AB5 6 LYS E 51 TYR E 57 -1 O LYS E 51 N GLN E 43 SHEET 6 AB5 6 LEU E 65 ASN E 66 -1 O ASN E 66 N PHE E 55 SHEET 1 AB6 4 TYR E 10 ARG E 14 0 SHEET 2 AB6 4 THR E 123 VAL E 128 1 O ARG E 124 N LYS E 11 SHEET 3 AB6 4 ALA E 100 SER E 107 -1 N TYR E 102 O THR E 123 SHEET 4 AB6 4 PHE E 118 PHE E 119 -1 O PHE E 118 N SER E 106 SHEET 1 AB7 4 GLU E 138 PHE E 142 0 SHEET 2 AB7 4 LYS E 154 PHE E 164 -1 O LEU E 160 N ALA E 140 SHEET 3 AB7 4 TYR E 202 SER E 211 -1 O TYR E 202 N PHE E 164 SHEET 4 AB7 4 VAL E 184 THR E 186 -1 N CYS E 185 O ARG E 207 SHEET 1 AB8 4 GLU E 138 PHE E 142 0 SHEET 2 AB8 4 LYS E 154 PHE E 164 -1 O LEU E 160 N ALA E 140 SHEET 3 AB8 4 TYR E 202 SER E 211 -1 O TYR E 202 N PHE E 164 SHEET 4 AB8 4 LEU E 191 LYS E 192 -1 N LEU E 191 O ALA E 203 SHEET 1 AB9 4 LYS E 178 VAL E 180 0 SHEET 2 AB9 4 VAL E 169 VAL E 175 -1 N VAL E 175 O LYS E 178 SHEET 3 AB9 4 HIS E 221 PHE E 228 -1 O ARG E 223 N TRP E 174 SHEET 4 AB9 4 GLN E 247 TRP E 254 -1 O VAL E 249 N VAL E 226 SSBOND 1 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 2 CYS B 25 CYS B 80 1555 1555 2.04 SSBOND 3 CYS D 23 CYS D 105 1555 1555 2.04 SSBOND 4 CYS D 150 CYS D 200 1555 1555 2.03 SSBOND 5 CYS D 175 CYS E 185 1555 1555 2.03 SSBOND 6 CYS E 23 CYS E 104 1555 1555 2.03 SSBOND 7 CYS E 159 CYS E 224 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 1.07 CISPEP 2 HIS B 31 PRO B 32 0 3.01 CISPEP 3 SER D 6 PRO D 7 0 -2.38 CISPEP 4 ASN E 7 PRO E 8 0 1.69 CISPEP 5 TYR E 165 PRO E 166 0 12.72 CRYST1 61.769 224.636 172.356 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016189 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005802 0.00000 TER 2190 TRP A 274 TER 3001 MET B 99 TER 3071 MET C 9 TER 4597 PHE D 215 TER 6556 ALA E 257 HETATM 6557 O HOH A 401 -10.106 -11.479 23.301 1.00 81.91 O HETATM 6558 O HOH A 402 10.087 -43.778 24.020 1.00 54.76 O HETATM 6559 O HOH A 403 -24.660 -65.620 -5.800 1.00 94.06 O HETATM 6560 O HOH A 404 21.523 -13.854 8.191 1.00 49.97 O HETATM 6561 O HOH A 405 12.792 -40.841 32.317 1.00 76.86 O HETATM 6562 O HOH B 101 -29.261 -27.120 17.974 1.00 67.65 O HETATM 6563 O HOH D 301 17.141 -19.899 42.735 1.00 65.90 O HETATM 6564 O HOH E 301 60.127 22.535 4.644 1.00 56.93 O HETATM 6565 O HOH E 302 -2.132 1.309 19.407 1.00 80.49 O HETATM 6566 O HOH E 303 7.981 16.769 25.527 1.00 53.97 O CONECT 1667 2057 CONECT 2057 1667 CONECT 2374 2829 CONECT 2829 2374 CONECT 3225 3758 CONECT 3758 3225 CONECT 4089 4482 CONECT 4288 5964 CONECT 4482 4089 CONECT 4771 5337 CONECT 5337 4771 CONECT 5757 6288 CONECT 5964 4288 CONECT 6288 5757 MASTER 413 0 0 9 78 0 0 6 6552 5 14 74 END