HEADER SIGNALING PROTEIN 31-AUG-20 7JYN TITLE SOLUTION NMR STRUCTURE OF HUMAN BRD3 ET COMPLEXED WITH NSD3(148-184) TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RING3-LIKE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE NSD3; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: NUCLEAR SET DOMAIN-CONTAINING PROTEIN 3,PROTEIN WHISTLE, COMPND 10 WHSC1-LIKE 1 ISOFORM 9 WITH METHYLTRANSFERASE ACTIVITY TO LYSINE, COMPND 11 WOLF-HIRSCHHORN SYNDROME CANDIDATE 1-LIKE PROTEIN 1,WHSC1-LIKE COMPND 12 PROTEIN 1; COMPND 13 EC: 2.1.1.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD3, KIAA0043, RING3L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NSD3, WHSC1L1, DC28; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BRD3 ET, NSD3 SOLUTION NMR, INTEGRASE, EXTRA TERMINAL DOMAIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.AIYER,G.V.T.SWAPNA,M.J.ROTH,G.T.MONTELIONE REVDAT 3 14-JUN-23 7JYN 1 REMARK REVDAT 2 18-AUG-21 7JYN 1 JRNL REVDAT 1 23-JUN-21 7JYN 0 JRNL AUTH S.AIYER,G.V.T.SWAPNA,L.C.MA,G.LIU,J.HAO,G.CHALMERS, JRNL AUTH 2 B.C.JACOBS,G.T.MONTELIONE,M.J.ROTH JRNL TITL A COMMON BINDING MOTIF IN THE ET DOMAIN OF BRD3 FORMS JRNL TITL 2 POLYMORPHIC STRUCTURAL INTERFACES WITH HOST AND VIRAL JRNL TITL 3 PROTEINS. JRNL REF STRUCTURE V. 29 886 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33592170 JRNL DOI 10.1016/J.STR.2021.01.010 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000251566. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : 100 MM NACL; 100 MM NACL; 100 MM REMARK 210 NACL REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 NSD3(148-184), 100 MM SODIUM REMARK 210 CHLORIDE, 20 MM SODIUM PHOSPHATE, REMARK 210 2 MM 2-MERCAPTOETHANOL, 90% H2O/ REMARK 210 10% D2O; 0.25 MM NSD3(148-184), REMARK 210 0.25 MM U-100% 13C; U-100% 15 REMARK 210 BRD3ET, 100 MM SODIUM CHLORIDE, REMARK 210 20 MM SODIUM PHOSPHATE, 2 MM 2- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O; REMARK 210 0.25 MM [U-100% 13C; U-100% 15N] REMARK 210 NSD3(148-184), 0.2 MM [U-100% REMARK 210 13C; U-100% 15N] BRD3ET, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM SODIUM REMARK 210 PHOSPHATE, 2 MM 2- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D HNOE; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 13C_15N_SIMNOESY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D 13C_EDITED_NOESY_ REMARK 210 AROMATIC; 3D X-FILTERED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.3B, 3.2, NMRPIPE 10.8, REMARK 210 AUTOASSIGN 2.4, PINE SERVER, REMARK 210 SPARKY, ASDP 2.3, CYANA 3.98.13 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 13 119.81 -171.79 REMARK 500 1 SER A 14 77.60 -163.67 REMARK 500 1 ASP A 18 107.48 -174.28 REMARK 500 1 SER A 19 -23.43 -154.98 REMARK 500 1 ASP A 68 -74.60 -89.76 REMARK 500 1 LEU A 93 -65.73 -98.02 REMARK 500 1 PHE B 147 -63.96 -126.78 REMARK 500 1 PRO B 151 -79.53 -72.86 REMARK 500 1 GLU B 152 111.14 58.44 REMARK 500 1 ASN B 163 -179.25 71.64 REMARK 500 1 LEU B 176 71.23 61.53 REMARK 500 1 GLU B 179 72.11 48.72 REMARK 500 1 VAL B 180 142.26 68.00 REMARK 500 1 ALA B 182 -39.19 -164.69 REMARK 500 2 HIS A 3 99.55 -165.03 REMARK 500 2 SER A 16 112.83 65.52 REMARK 500 2 GLU A 20 29.81 -142.16 REMARK 500 2 GLU A 24 105.44 -172.92 REMARK 500 2 PRO A 27 93.18 -69.39 REMARK 500 2 SER A 65 -89.34 -77.51 REMARK 500 2 GLN A 94 93.23 -65.26 REMARK 500 2 ASN B 163 92.17 -66.16 REMARK 500 2 LEU B 172 -81.69 -66.39 REMARK 500 2 VAL B 180 143.89 -170.33 REMARK 500 2 ALA B 182 -86.81 -92.16 REMARK 500 2 SER B 183 30.85 -166.15 REMARK 500 3 ALA A 15 -76.80 -84.47 REMARK 500 3 SER A 16 114.93 61.84 REMARK 500 3 ASP A 18 139.17 -170.56 REMARK 500 3 SER A 19 27.97 -145.28 REMARK 500 3 PHE B 147 74.96 54.55 REMARK 500 3 CYS B 173 -42.66 76.01 REMARK 500 4 SER A 16 -175.56 61.63 REMARK 500 4 ASP A 18 108.93 -167.22 REMARK 500 4 SER A 65 -72.55 -74.73 REMARK 500 4 GLN A 94 82.17 61.58 REMARK 500 4 PHE B 147 -48.71 -151.19 REMARK 500 4 ASN B 163 15.31 -157.79 REMARK 500 4 CYS B 173 -48.10 -157.81 REMARK 500 4 ASP B 175 -95.19 -92.16 REMARK 500 4 ASN B 178 -72.25 -123.70 REMARK 500 4 GLU B 179 -77.59 -106.52 REMARK 500 4 VAL B 180 75.72 59.31 REMARK 500 5 SER A 14 114.35 -163.07 REMARK 500 5 ALA A 15 -77.94 -112.17 REMARK 500 5 SER A 16 120.54 58.39 REMARK 500 5 ASP A 18 118.38 -161.02 REMARK 500 5 PRO A 27 89.97 -59.37 REMARK 500 5 ASP A 68 -66.84 -96.24 REMARK 500 5 GLN A 94 -66.53 70.22 REMARK 500 REMARK 500 THIS ENTRY HAS 244 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30790 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF HUMAN BRD3 ET COMPLEXED WITH NSD3(148-184) REMARK 900 PEPTIDE DBREF 7JYN A 10 96 UNP Q15059 BRD3_HUMAN 554 640 DBREF 7JYN B 148 184 UNP Q9BZ95 NSD3_HUMAN 148 184 SEQADV 7JYN HIS A 1 UNP Q15059 EXPRESSION TAG SEQADV 7JYN HIS A 2 UNP Q15059 EXPRESSION TAG SEQADV 7JYN HIS A 3 UNP Q15059 EXPRESSION TAG SEQADV 7JYN HIS A 4 UNP Q15059 EXPRESSION TAG SEQADV 7JYN HIS A 5 UNP Q15059 EXPRESSION TAG SEQADV 7JYN HIS A 6 UNP Q15059 EXPRESSION TAG SEQADV 7JYN SER A 7 UNP Q15059 EXPRESSION TAG SEQADV 7JYN HIS A 8 UNP Q15059 EXPRESSION TAG SEQADV 7JYN MET A 9 UNP Q15059 EXPRESSION TAG SEQADV 7JYN GLU B 146 UNP Q9BZ95 EXPRESSION TAG SEQADV 7JYN PHE B 147 UNP Q9BZ95 EXPRESSION TAG SEQRES 1 A 96 HIS HIS HIS HIS HIS HIS SER HIS MET GLY LYS GLN ALA SEQRES 2 A 96 SER ALA SER TYR ASP SER GLU GLU GLU GLU GLU GLY LEU SEQRES 3 A 96 PRO MET SER TYR ASP GLU LYS ARG GLN LEU SER LEU ASP SEQRES 4 A 96 ILE ASN ARG LEU PRO GLY GLU LYS LEU GLY ARG VAL VAL SEQRES 5 A 96 HIS ILE ILE GLN SER ARG GLU PRO SER LEU ARG ASP SER SEQRES 6 A 96 ASN PRO ASP GLU ILE GLU ILE ASP PHE GLU THR LEU LYS SEQRES 7 A 96 PRO THR THR LEU ARG GLU LEU GLU ARG TYR VAL LYS SER SEQRES 8 A 96 CYS LEU GLN LYS LYS SEQRES 1 B 39 GLU PHE THR GLY SER PRO GLU ILE LYS LEU LYS ILE THR SEQRES 2 B 39 LYS THR ILE GLN ASN GLY ARG GLU LEU PHE GLU SER SER SEQRES 3 B 39 LEU CYS GLY ASP LEU LEU ASN GLU VAL GLN ALA SER GLU HELIX 1 AA1 SER A 29 ARG A 42 1 14 HELIX 2 AA2 LYS A 47 GLU A 59 1 13 HELIX 3 AA3 GLU A 59 ASN A 66 1 8 HELIX 4 AA4 GLU A 75 LEU A 77 5 3 HELIX 5 AA5 LYS A 78 GLN A 94 1 17 SHEET 1 AA1 3 GLU A 69 ASP A 73 0 SHEET 2 AA1 3 LYS B 154 THR B 158 -1 O ILE B 157 N ILE A 70 SHEET 3 AA1 3 GLU B 169 SER B 171 -1 O GLU B 169 N THR B 158 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1