HEADER IMMUNE SYSTEM 01-SEP-20 7JYU TITLE CRYSTAL STRUCTURE OF HLA-A*2402 IN COMPLEX WITH IYFSPIRVTF, AN 10-MER TITLE 2 EPITOPE FROM INFLUENZA B VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: HLA-A*2402 HEAVY CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: NP-164-173 PEPTIDE FROM INFLUENZA B, IYFSPIRVTF; COMPND 12 CHAIN: C, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 22 ORGANISM_TAXID: 11320 KEYWDS HLA-A*2402, INFLUENZA VIRUS A, IAV, TCR, T CELL, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.T.NGUYEN,C.SZETO,J.ROSSJOHN,S.GRAS REVDAT 3 18-OCT-23 7JYU 1 REMARK REVDAT 2 23-JUN-21 7JYU 1 JRNL REVDAT 1 14-APR-21 7JYU 0 JRNL AUTH L.HENSEN,P.T.ILLING,E.BRIDIE CLEMENS,T.H.O.NGUYEN, JRNL AUTH 2 M.KOUTSAKOS,C.E.VAN DE SANDT,N.A.MIFSUD,A.T.NGUYEN,C.SZETO, JRNL AUTH 3 B.Y.CHUA,H.HALIM,S.RIZZETTO,F.LUCIANI,L.LOH,E.J.GRANT, JRNL AUTH 4 P.M.SAUNDERS,A.G.BROOKS,S.ROCKMAN,T.C.KOTSIMBOS,A.C.CHENG, JRNL AUTH 5 M.RICHARDS,G.P.WESTALL,L.M.WAKIM,T.LOUDOVARIS,S.I.MANNERING, JRNL AUTH 6 M.ELLIOTT,S.G.TANGYE,D.C.JACKSON,K.L.FLANAGAN,J.ROSSJOHN, JRNL AUTH 7 S.GRAS,J.DAVIES,A.MILLER,S.Y.C.TONG,A.W.PURCELL,K.KEDZIERSKA JRNL TITL CD8 + T CELL LANDSCAPE IN INDIGENOUS AND NON-INDIGENOUS JRNL TITL 2 PEOPLE RESTRICTED BY INFLUENZA MORTALITY-ASSOCIATED JRNL TITL 3 HLA-A*24:02 ALLOMORPH. JRNL REF NAT COMMUN V. 12 2931 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34006841 JRNL DOI 10.1038/S41467-021-23212-X REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 23713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1152 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2851 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2233 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2710 REMARK 3 BIN R VALUE (WORKING SET) : 0.2189 REMARK 3 BIN FREE R VALUE : 0.3032 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.95 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.90900 REMARK 3 B22 (A**2) : -10.47240 REMARK 3 B33 (A**2) : 7.56340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.330 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.363 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6465 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8766 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2230 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 176 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 939 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6465 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 801 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7000 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.08 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.01 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7JYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23713 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 46.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.00300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4F7M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.2 MGCL2, 0.1 TRIS-HCL REMARK 280 PH 8.5, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.89800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.89800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.96050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.12300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.96050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.12300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.89800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.96050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.12300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.89800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.96050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.12300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 276 REMARK 465 SER A 277 REMARK 465 SER A 278 REMARK 465 MET B 0 REMARK 465 GLU D 275 REMARK 465 PRO D 276 REMARK 465 SER D 277 REMARK 465 SER D 278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO D 250 N GLY D 252 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE E 1 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 51.40 -112.47 REMARK 500 ASP A 29 -119.19 49.65 REMARK 500 ASP A 39 62.13 -105.59 REMARK 500 HIS A 114 92.84 -174.50 REMARK 500 TYR A 123 -78.79 -111.12 REMARK 500 ASP A 137 -154.76 -133.84 REMARK 500 ASP A 223 125.56 -35.70 REMARK 500 THR A 225 -8.39 -145.83 REMARK 500 ASN B 21 -155.52 -133.71 REMARK 500 PRO B 32 -174.47 -69.26 REMARK 500 LYS B 48 57.39 74.04 REMARK 500 TRP B 60 -10.32 70.93 REMARK 500 ARG C 7 35.04 -92.21 REMARK 500 ASP D 29 -109.96 52.82 REMARK 500 LEU D 110 -53.69 -124.85 REMARK 500 TYR D 123 -71.54 -112.51 REMARK 500 GLU D 128 -27.40 -37.62 REMARK 500 ALA D 136 -72.46 -52.21 REMARK 500 SER D 195 -156.38 -158.68 REMARK 500 ASP D 223 109.95 -49.55 REMARK 500 THR D 225 -27.46 -39.44 REMARK 500 ASP D 227 50.40 -91.85 REMARK 500 SER D 251 42.91 -58.02 REMARK 500 TRP E 60 -7.60 89.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 433 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH B 119 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH D 318 DISTANCE = 6.53 ANGSTROMS DBREF1 7JYU A 1 278 UNP A0A411J078_HUMAN DBREF2 7JYU A A0A411J078 25 302 DBREF 7JYU B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7JYU C 1 10 PDB 7JYU 7JYU 1 10 DBREF1 7JYU D 1 278 UNP A0A411J078_HUMAN DBREF2 7JYU D A0A411J078 25 302 DBREF 7JYU E 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7JYU F 1 10 PDB 7JYU 7JYU 1 10 SEQADV 7JYU MET B 0 UNP P61769 INITIATING METHIONINE SEQADV 7JYU MET E 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 278 GLY SER HIS SER MET ARG TYR PHE SER THR SER VAL SER SEQRES 2 A 278 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 278 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 278 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 278 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLU GLU THR GLY SEQRES 6 A 278 LYS VAL LYS ALA HIS SER GLN THR ASP ARG GLU ASN LEU SEQRES 7 A 278 ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 278 SER HIS THR LEU GLN MET MET PHE GLY CYS ASP VAL GLY SEQRES 9 A 278 SER ASP GLY ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 A 278 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 A 278 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 278 LYS ARG LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN GLN SEQRES 13 A 278 ARG ALA TYR LEU GLU GLY THR CYS VAL ASP GLY LEU ARG SEQRES 14 A 278 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 278 ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SER SEQRES 16 A 278 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 278 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 278 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 278 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 278 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 278 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 278 TRP GLU PRO SER SER SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 10 ILE TYR PHE SER PRO ILE ARG VAL THR PHE SEQRES 1 D 278 GLY SER HIS SER MET ARG TYR PHE SER THR SER VAL SER SEQRES 2 D 278 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 D 278 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 D 278 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 D 278 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLU GLU THR GLY SEQRES 6 D 278 LYS VAL LYS ALA HIS SER GLN THR ASP ARG GLU ASN LEU SEQRES 7 D 278 ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 D 278 SER HIS THR LEU GLN MET MET PHE GLY CYS ASP VAL GLY SEQRES 9 D 278 SER ASP GLY ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 D 278 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 D 278 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 D 278 LYS ARG LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN GLN SEQRES 13 D 278 ARG ALA TYR LEU GLU GLY THR CYS VAL ASP GLY LEU ARG SEQRES 14 D 278 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 D 278 ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SER SEQRES 16 D 278 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 D 278 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 D 278 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 D 278 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 D 278 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 D 278 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 D 278 TRP GLU PRO SER SER SEQRES 1 E 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 E 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 E 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 E 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 E 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 E 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 E 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 E 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 F 10 ILE TYR PHE SER PRO ILE ARG VAL THR PHE HET MG A 301 1 HETNAM MG MAGNESIUM ION FORMUL 7 MG MG 2+ FORMUL 8 HOH *91(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 HIS A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLY A 252 GLN A 255 5 4 HELIX 8 AA8 ALA D 49 GLU D 53 5 5 HELIX 9 AA9 GLY D 56 ASN D 86 1 31 HELIX 10 AB1 MET D 138 HIS D 151 1 14 HELIX 11 AB2 HIS D 151 GLU D 161 1 11 HELIX 12 AB3 GLY D 162 GLY D 175 1 14 HELIX 13 AB4 GLY D 175 GLN D 180 1 6 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O TYR A 113 N GLY A 100 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O TYR A 123 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 GLN A 224 0 SHEET 2 AA4 4 ILE A 213 ARG A 219 -1 N TRP A 217 O GLN A 224 SHEET 3 AA4 4 TYR A 257 HIS A 263 -1 O GLN A 262 N THR A 214 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 8 GLU D 46 PRO D 47 0 SHEET 2 AA8 8 THR D 31 ASP D 37 -1 N ARG D 35 O GLU D 46 SHEET 3 AA8 8 ARG D 21 VAL D 28 -1 N GLY D 26 O PHE D 33 SHEET 4 AA8 8 HIS D 3 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 AA8 8 THR D 94 VAL D 103 -1 O LEU D 95 N SER D 11 SHEET 6 AA8 8 PHE D 109 TYR D 118 -1 O TYR D 113 N GLY D 100 SHEET 7 AA8 8 LYS D 121 LEU D 126 -1 O ILE D 124 N TYR D 116 SHEET 8 AA8 8 TRP D 133 ALA D 135 -1 O THR D 134 N ALA D 125 SHEET 1 AA9 4 HIS D 188 PRO D 193 0 SHEET 2 AA9 4 GLU D 198 PHE D 208 -1 O THR D 200 N HIS D 192 SHEET 3 AA9 4 PHE D 241 PRO D 250 -1 O VAL D 249 N ALA D 199 SHEET 4 AA9 4 GLU D 229 LEU D 230 -1 N GLU D 229 O ALA D 246 SHEET 1 AB1 4 HIS D 188 PRO D 193 0 SHEET 2 AB1 4 GLU D 198 PHE D 208 -1 O THR D 200 N HIS D 192 SHEET 3 AB1 4 PHE D 241 PRO D 250 -1 O VAL D 249 N ALA D 199 SHEET 4 AB1 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 AB2 4 GLU D 222 ASP D 223 0 SHEET 2 AB2 4 THR D 214 ARG D 219 -1 N ARG D 219 O GLU D 222 SHEET 3 AB2 4 TYR D 257 GLN D 262 -1 O HIS D 260 N THR D 216 SHEET 4 AB2 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 AB3 4 LYS E 6 SER E 11 0 SHEET 2 AB3 4 ASN E 21 PHE E 30 -1 O TYR E 26 N GLN E 8 SHEET 3 AB3 4 PHE E 62 PHE E 70 -1 O TYR E 66 N CYS E 25 SHEET 4 AB3 4 GLU E 50 HIS E 51 -1 N GLU E 50 O TYR E 67 SHEET 1 AB4 4 LYS E 6 SER E 11 0 SHEET 2 AB4 4 ASN E 21 PHE E 30 -1 O TYR E 26 N GLN E 8 SHEET 3 AB4 4 PHE E 62 PHE E 70 -1 O TYR E 66 N CYS E 25 SHEET 4 AB4 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 AB5 4 GLU E 44 ARG E 45 0 SHEET 2 AB5 4 GLU E 36 LYS E 41 -1 N LYS E 41 O GLU E 44 SHEET 3 AB5 4 TYR E 78 ASN E 83 -1 O ASN E 83 N GLU E 36 SHEET 4 AB5 4 LYS E 91 LYS E 94 -1 O LYS E 91 N VAL E 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.06 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.05 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.10 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.08 SSBOND 5 CYS E 25 CYS E 80 1555 1555 2.06 LINK OE1 GLN A 180 MG MG A 301 1555 1555 2.86 CISPEP 1 TYR A 209 PRO A 210 0 2.07 CISPEP 2 TRP A 274 GLU A 275 0 -0.03 CISPEP 3 HIS B 31 PRO B 32 0 -1.79 CISPEP 4 TYR D 209 PRO D 210 0 5.96 CISPEP 5 HIS E 31 PRO E 32 0 1.46 CRYST1 79.921 120.246 187.796 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005325 0.00000