HEADER TRANSFERASE 02-SEP-20 7JZS TITLE AMINOGLYCOSIDE N-2'-ACETYLTRANSFERASE-IA [AAC(2')-IA] IN COMPLEX WITH TITLE 2 COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AAC(2')-IA; COMPND 5 EC: 2.3.1.59; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROVIDENCIA STUARTII; SOURCE 3 ORGANISM_TAXID: 588; SOURCE 4 GENE: AAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ACETYLTRANSFERASE, GNAT SUPERFAMILY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,A.V.BASSENDEN,A.M.BERGHUIS REVDAT 3 18-OCT-23 7JZS 1 REMARK REVDAT 2 14-JUL-21 7JZS 1 JRNL REVDAT 1 02-JUN-21 7JZS 0 JRNL AUTH A.V.BASSENDEN,L.DUMALO,J.PARK,J.BLANCHET,K.MAITI,D.P.ARYA, JRNL AUTH 2 A.M.BERGHUIS JRNL TITL STRUCTURAL AND PHYLOGENETIC ANALYSES OF RESISTANCE TO JRNL TITL 2 NEXT-GENERATION AMINOGLYCOSIDES CONFERRED BY AAC(2') JRNL TITL 3 ENZYMES. JRNL REF SCI REP V. 11 11614 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 34078922 JRNL DOI 10.1038/S41598-021-89446-3 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 49768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2675 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3603 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.046 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.521 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1850 ; 0.031 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1588 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2539 ; 2.528 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3711 ; 1.222 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 6.891 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;34.007 ;24.719 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;14.027 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.666 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 258 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2193 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 404 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 899 ; 4.316 ; 2.518 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 898 ; 4.301 ; 2.516 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1164 ; 4.970 ; 3.778 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1165 ; 4.968 ; 3.779 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 951 ; 6.852 ; 2.943 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 951 ; 6.852 ; 2.942 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1376 ; 7.882 ; 4.290 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1993 ; 7.320 ;29.905 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1993 ; 7.320 ;29.900 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3438 ; 6.250 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 101 ;31.317 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3469 ;17.215 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7JZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER METALJET REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 52.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5US1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 400, HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.02500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.36000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.03750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.36000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.01250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.36000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.36000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.03750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.36000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.36000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.01250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.02500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 466 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 121 CD CE NZ REMARK 470 LYS A 139 CE NZ REMARK 470 GLU A 149 CD OE1 OE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 HIS A 183 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 27 O HOH A 301 1.34 REMARK 500 O HOH A 351 O HOH A 461 2.01 REMARK 500 CD GLU A 27 O HOH A 301 2.10 REMARK 500 O HOH A 441 O HOH A 488 2.12 REMARK 500 NE2 GLN A 99 O HOH A 302 2.12 REMARK 500 O HOH A 437 O HOH A 440 2.13 REMARK 500 O HOH A 461 O HOH A 488 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 30 CD GLU A 30 OE1 -0.077 REMARK 500 GLN A 63 CD GLN A 63 NE2 -0.236 REMARK 500 ASN A 70 CG ASN A 70 ND2 0.285 REMARK 500 GLU A 79 CA GLU A 79 CB -0.132 REMARK 500 GLU A 79 CD GLU A 79 OE2 -0.137 REMARK 500 MET A 81 CG MET A 81 SD -0.233 REMARK 500 TRP A 178 CE3 TRP A 178 CZ3 0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 30 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASN A 70 CB - CG - OD1 ANGL. DEV. = 17.7 DEGREES REMARK 500 GLU A 79 OE1 - CD - OE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 MET A 81 CG - SD - CE ANGL. DEV. = -18.6 DEGREES REMARK 500 ILE A 147 CB - CA - C ANGL. DEV. = -21.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 76.97 -102.90 REMARK 500 PHE A 33 99.26 -165.74 REMARK 500 GLN A 52 -119.55 57.19 REMARK 500 ASP A 69 -108.48 49.39 REMARK 500 ASP A 69 -109.82 49.39 REMARK 500 GLN A 140 53.44 35.94 REMARK 500 ASP A 176 110.99 -22.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VR3 RELATED DB: PDB REMARK 900 6VR3 CONTAINS SAME PROTEIN COMPLEXED WITH ACETYLATED-NETILMICIN REMARK 900 RELATED ID: 6VR2 RELATED DB: PDB REMARK 900 6VR2 CONTAINS SAME PROTEIN COMPLEXED WITH ACETYLATED-TOBRAMYCIN REMARK 900 RELATED ID: 6VTA RELATED DB: PDB REMARK 900 6VTA CONTAINS SAME PROTEIN COMPLEXED WITH AMIKACIN REMARK 900 RELATED ID: 6VOU RELATED DB: PDB REMARK 900 6VOU CONTAINS SAME PROTEIN COMPLEXED WITH ACETYLATED-PLAZOMICIN DBREF 7JZS A 2 178 UNP Q52424 AAC2_PROST 2 178 SEQADV 7JZS LEU A 179 UNP Q52424 EXPRESSION TAG SEQADV 7JZS GLU A 180 UNP Q52424 EXPRESSION TAG SEQADV 7JZS HIS A 181 UNP Q52424 EXPRESSION TAG SEQADV 7JZS HIS A 182 UNP Q52424 EXPRESSION TAG SEQADV 7JZS HIS A 183 UNP Q52424 EXPRESSION TAG SEQRES 1 A 182 GLY ILE GLU TYR ARG SER LEU HIS THR SER GLN LEU THR SEQRES 2 A 182 LEU SER GLU LYS GLU ALA LEU TYR ASP LEU LEU ILE GLU SEQRES 3 A 182 GLY PHE GLU GLY ASP PHE SER HIS ASP ASP PHE ALA HIS SEQRES 4 A 182 THR LEU GLY GLY MET HIS VAL MET ALA PHE ASP GLN GLN SEQRES 5 A 182 LYS LEU VAL GLY HIS VAL ALA ILE ILE GLN ARG HIS MET SEQRES 6 A 182 ALA LEU ASP ASN THR PRO ILE SER VAL GLY TYR VAL GLU SEQRES 7 A 182 ALA MET VAL VAL GLU GLN SER TYR ARG ARG GLN GLY ILE SEQRES 8 A 182 GLY ARG GLN LEU MET LEU GLN THR ASN LYS ILE ILE ALA SEQRES 9 A 182 SER CYS TYR GLN LEU GLY LEU LEU SER ALA SER ASP ASP SEQRES 10 A 182 GLY GLN LYS LEU TYR HIS SER VAL GLY TRP GLN ILE TRP SEQRES 11 A 182 LYS GLY LYS LEU PHE GLU LEU LYS GLN GLY SER TYR ILE SEQRES 12 A 182 ARG SER ILE GLU GLU GLU GLY GLY VAL MET GLY TRP LYS SEQRES 13 A 182 ALA ASP GLY GLU VAL ASP PHE THR ALA SER LEU TYR CYS SEQRES 14 A 182 ASP PHE ARG GLY GLY ASP GLN TRP LEU GLU HIS HIS HIS HET COA A 201 48 HET SO4 A 202 5 HET SO4 A 203 5 HET PEG A 204 7 HETNAM COA COENZYME A HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *190(H2 O) HELIX 1 AA1 SER A 11 LEU A 13 5 3 HELIX 2 AA2 THR A 14 PHE A 29 1 16 HELIX 3 AA3 SER A 34 THR A 41 1 8 HELIX 4 AA4 GLN A 85 ARG A 88 5 4 HELIX 5 AA5 GLY A 91 TYR A 108 1 18 HELIX 6 AA6 GLY A 119 SER A 125 1 7 HELIX 7 AA7 ILE A 147 GLU A 150 5 4 SHEET 1 AA1 7 ILE A 3 HIS A 9 0 SHEET 2 AA1 7 MET A 45 ASP A 51 -1 O PHE A 50 N GLU A 4 SHEET 3 AA1 7 LYS A 54 LEU A 68 -1 O VAL A 56 N ALA A 49 SHEET 4 AA1 7 THR A 71 VAL A 83 -1 O TYR A 77 N ILE A 62 SHEET 5 AA1 7 LEU A 110 SER A 114 1 O LEU A 112 N VAL A 78 SHEET 6 AA1 7 VAL A 153 LYS A 157 -1 O TRP A 156 N GLY A 111 SHEET 7 AA1 7 GLN A 129 ILE A 130 -1 N GLN A 129 O GLY A 155 SHEET 1 AA2 6 ILE A 3 HIS A 9 0 SHEET 2 AA2 6 MET A 45 ASP A 51 -1 O PHE A 50 N GLU A 4 SHEET 3 AA2 6 LYS A 54 LEU A 68 -1 O VAL A 56 N ALA A 49 SHEET 4 AA2 6 LEU A 168 TYR A 169 -1 O TYR A 169 N ALA A 67 SHEET 5 AA2 6 LEU A 135 LYS A 139 1 N PHE A 136 O LEU A 168 SHEET 6 AA2 6 SER A 142 ARG A 145 -1 O SER A 142 N LYS A 139 SITE 1 AC1 21 GLY A 28 PHE A 29 MET A 81 VAL A 82 SITE 2 AC1 21 VAL A 83 ARG A 88 ARG A 89 GLN A 90 SITE 3 AC1 21 GLY A 91 GLY A 93 ARG A 94 SER A 114 SITE 4 AC1 21 TYR A 123 HOH A 305 HOH A 337 HOH A 340 SITE 5 AC1 21 HOH A 355 HOH A 397 HOH A 414 HOH A 437 SITE 6 AC1 21 HOH A 440 SITE 1 AC2 3 HIS A 124 GLN A 129 ILE A 130 SITE 1 AC3 5 GLU A 84 SER A 86 LYS A 134 HOH A 309 SITE 2 AC3 5 HOH A 311 SITE 1 AC4 6 ASP A 69 ASN A 70 GLN A 140 GLY A 141 SITE 2 AC4 6 TYR A 169 HOH A 425 CRYST1 58.720 58.720 120.050 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017030 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008330 0.00000