HEADER MEMBRANE PROTEIN 07-SEP-20 7K15 TITLE CRYSTAL STRUCTURE OF THE HUMAN LEUKOTRIENE B4 RECEPTOR 1 IN COMPLEX TITLE 2 WITH SELECTIVE ANTAGONIST MK-D-046 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE B4 RECEPTOR 1,FLAVODOXIN,LEUKOTRIENE B4 COMPND 3 RECEPTOR 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: LTB4-R1,CHEMOATTRACTANT RECEPTOR-LIKE 1,G-PROTEIN COUPLED COMPND 6 RECEPTOR 16,P2Y PURINOCEPTOR 7,P2Y7,LTB4-R1,CHEMOATTRACTANT RECEPTOR- COMPND 7 LIKE 1,G-PROTEIN COUPLED RECEPTOR 16,P2Y PURINOCEPTOR 7,P2Y7; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, DESULFOVIBRIO VULGARIS (STRAIN SOURCE 3 HILDENBOROUGH / ATCC 29579 / DSM 644 / NCIMB 8303); SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606, 882; SOURCE 6 STRAIN: HILDENBOROUGH / ATCC 29579 / DSM 644 / NCIMB 8303; SOURCE 7 GENE: LTB4R, BLT, BLT1, BLTR, CMKRL1, GPR16, P2RY7, DVU_2680; SOURCE 8 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HUMAN LEUKOTRIENE B4 RECEPTOR 1, HBLT1, BLT1, BLTR1, LTB4, LTB4R, KEYWDS 2 LT4R1, LTB4R1, MK-D-046, SELECTIVE ANTAGONIST, INFLAMMATION, KEYWDS 3 INFLAMMATORY DISEASE, TYPE 2 DIABETES, G PROTEIN-COUPLED RECEPTOR, KEYWDS 4 GPCR, FLAVODOXIN FUSION, MEMBRANE PROTEIN, LCP EXPDTA X-RAY DIFFRACTION AUTHOR N.MICHAELIAN,G.W.HAN,V.CHEREZOV REVDAT 3 18-OCT-23 7K15 1 REMARK REVDAT 2 02-JUN-21 7K15 1 JRNL REVDAT 1 17-FEB-21 7K15 0 JRNL AUTH N.MICHAELIAN,A.SADYBEKOV,E.BESSERER-OFFROY,G.W.HAN, JRNL AUTH 2 H.KRISHNAMURTHY,B.A.ZAMLYNNY,X.FRADERA,P.SILIPHAIVANH, JRNL AUTH 3 J.PRESLAND,K.B.SPENCER,S.M.SOISSON,P.POPOV,P.SARRET, JRNL AUTH 4 V.KATRITCH,V.CHEREZOV JRNL TITL STRUCTURAL INSIGHTS ON LIGAND RECOGNITION AT THE HUMAN JRNL TITL 2 LEUKOTRIENE B4 RECEPTOR 1. JRNL REF NAT COMMUN V. 12 2971 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34016973 JRNL DOI 10.1038/S41467-021-23149-1 REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.8 REMARK 3 NUMBER OF REFLECTIONS : 13808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3700 - 4.9200 0.99 3474 173 0.1967 0.2406 REMARK 3 2 4.9200 - 3.9100 0.98 3233 199 0.1894 0.2462 REMARK 3 3 3.9100 - 3.4100 0.87 2866 143 0.2304 0.2662 REMARK 3 4 3.4100 - 3.1000 0.67 2153 127 0.2671 0.3524 REMARK 3 5 3.1000 - 2.8800 0.42 1368 72 0.3170 0.3258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0870 0.3740 7.8366 REMARK 3 T TENSOR REMARK 3 T11: 1.2059 T22: 0.3858 REMARK 3 T33: 0.4876 T12: 0.3252 REMARK 3 T13: -0.0304 T23: -0.0853 REMARK 3 L TENSOR REMARK 3 L11: 0.8011 L22: 0.1682 REMARK 3 L33: 0.1427 L12: -0.3472 REMARK 3 L13: 0.0964 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.7059 S12: 0.4546 S13: -0.1721 REMARK 3 S21: -0.4813 S22: -0.2133 S23: -0.1506 REMARK 3 S31: 0.2027 S32: 0.0487 S33: 1.2549 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9446 2.4685 24.4583 REMARK 3 T TENSOR REMARK 3 T11: 0.4820 T22: 0.3603 REMARK 3 T33: 0.3409 T12: 0.0947 REMARK 3 T13: -0.0201 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.5664 L22: 0.3084 REMARK 3 L33: 0.0870 L12: -0.1381 REMARK 3 L13: -0.0040 L23: 0.1401 REMARK 3 S TENSOR REMARK 3 S11: 0.1844 S12: -0.0072 S13: -0.1779 REMARK 3 S21: -0.3793 S22: -0.0524 S23: 0.3650 REMARK 3 S31: 0.0270 S32: -0.0002 S33: 0.0026 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 212 AND RESID 1002 REMARK 3 THROUGH 1150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.1410 40.6879 26.9520 REMARK 3 T TENSOR REMARK 3 T11: 0.2287 T22: 0.2860 REMARK 3 T33: 0.3572 T12: 0.0297 REMARK 3 T13: -0.0368 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.7490 L22: 0.6020 REMARK 3 L33: 0.9194 L12: -0.2860 REMARK 3 L13: -0.2504 L23: -0.3670 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.0961 S13: -0.1953 REMARK 3 S21: -0.0954 S22: -0.0376 S23: 0.0755 REMARK 3 S31: 0.0089 S32: -0.0816 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6193 28.4314 22.9945 REMARK 3 T TENSOR REMARK 3 T11: 0.4142 T22: 0.4001 REMARK 3 T33: 0.2755 T12: 0.1403 REMARK 3 T13: 0.1782 T23: -0.1330 REMARK 3 L TENSOR REMARK 3 L11: 0.9966 L22: 0.0421 REMARK 3 L33: 0.1813 L12: -0.2036 REMARK 3 L13: 0.4242 L23: -0.0862 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: 0.1096 S13: -0.0354 REMARK 3 S21: -0.2424 S22: -0.1902 S23: 0.0647 REMARK 3 S31: 0.1190 S32: 0.2199 S33: -0.3919 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7828 -0.5686 23.5822 REMARK 3 T TENSOR REMARK 3 T11: 0.3916 T22: 0.2066 REMARK 3 T33: 0.6338 T12: 0.0923 REMARK 3 T13: -0.2422 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 0.2636 L22: 0.9185 REMARK 3 L33: 0.9159 L12: 0.2263 REMARK 3 L13: -0.3860 L23: 0.1934 REMARK 3 S TENSOR REMARK 3 S11: 0.1556 S12: 0.2023 S13: -0.4749 REMARK 3 S21: -0.1742 S22: 0.0364 S23: 0.1546 REMARK 3 S31: -0.0457 S32: 0.0488 S33: 0.6432 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5181 -13.8827 20.5906 REMARK 3 T TENSOR REMARK 3 T11: 0.7751 T22: 0.4591 REMARK 3 T33: 0.5823 T12: 0.1234 REMARK 3 T13: -0.1929 T23: -0.0954 REMARK 3 L TENSOR REMARK 3 L11: 0.1395 L22: 0.2227 REMARK 3 L33: 0.3862 L12: -0.1739 REMARK 3 L13: -0.2331 L23: 0.2960 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: 0.1033 S13: -0.1563 REMARK 3 S21: 0.1704 S22: -0.4597 S23: 0.2653 REMARK 3 S31: 0.6952 S32: 0.0085 S33: -0.0763 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0399 21.7085 9.7402 REMARK 3 T TENSOR REMARK 3 T11: 0.7510 T22: 0.8467 REMARK 3 T33: 0.4377 T12: 0.0770 REMARK 3 T13: -0.0540 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.0539 L22: 0.0227 REMARK 3 L33: 0.0630 L12: -0.0154 REMARK 3 L13: -0.0113 L23: -0.0325 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: 0.3240 S13: 0.0699 REMARK 3 S21: -0.1819 S22: 0.0068 S23: -0.2267 REMARK 3 S31: -0.2566 S32: 0.2498 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14961 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.24600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5X33, 1I1O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE TRIBASIC DIHYDRATE PH REMARK 280 5.8, SODIUM ACETATE TRIHYDRATE, BENZAMIDINE HYDROCHLORIDE, PEG- REMARK 280 400, MK-D-046, DMSO, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.38500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.74000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.38500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 LYS A -21 REMARK 465 THR A -20 REMARK 465 ILE A -19 REMARK 465 ILE A -18 REMARK 465 ALA A -17 REMARK 465 LEU A -16 REMARK 465 SER A -15 REMARK 465 TYR A -14 REMARK 465 ILE A -13 REMARK 465 PHE A -12 REMARK 465 CYS A -11 REMARK 465 LEU A -10 REMARK 465 VAL A -9 REMARK 465 PHE A -8 REMARK 465 ALA A -7 REMARK 465 ASP A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 ASP A 0 REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 16 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 GLN A 48 CG CD OE1 NE2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1042 CG CD OE1 OE2 REMARK 470 GLU A1118 CG CD OE1 OE2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 252 CG CD OE1 NE2 REMARK 470 LEU A 258 CG CD1 CD2 REMARK 470 ARG A 294 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 162 171.39 69.22 REMARK 500 PHE A 190 -61.94 -158.35 REMARK 500 CYS A1057 147.21 -172.19 REMARK 500 TRP A1060 24.07 -144.04 REMARK 500 ALA A 250 -58.08 -135.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 2104 REMARK 610 OLC A 2105 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD1 REMARK 620 2 SER A 104 OG 87.3 REMARK 620 3 HOH A2205 O 127.0 126.7 REMARK 620 N 1 2 DBREF 7K15 A 5 212 UNP Q15722 LT4R1_HUMAN 5 212 DBREF 7K15 A 1002 1148 UNP P00323 FLAV_DESVH 2 148 DBREF 7K15 A 213 310 UNP Q15722 LT4R1_HUMAN 213 310 SEQADV 7K15 MET A -22 UNP Q15722 EXPRESSION TAG SEQADV 7K15 LYS A -21 UNP Q15722 EXPRESSION TAG SEQADV 7K15 THR A -20 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ILE A -19 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ILE A -18 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ALA A -17 UNP Q15722 EXPRESSION TAG SEQADV 7K15 LEU A -16 UNP Q15722 EXPRESSION TAG SEQADV 7K15 SER A -15 UNP Q15722 EXPRESSION TAG SEQADV 7K15 TYR A -14 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ILE A -13 UNP Q15722 EXPRESSION TAG SEQADV 7K15 PHE A -12 UNP Q15722 EXPRESSION TAG SEQADV 7K15 CYS A -11 UNP Q15722 EXPRESSION TAG SEQADV 7K15 LEU A -10 UNP Q15722 EXPRESSION TAG SEQADV 7K15 VAL A -9 UNP Q15722 EXPRESSION TAG SEQADV 7K15 PHE A -8 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ALA A -7 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ASP A -6 UNP Q15722 EXPRESSION TAG SEQADV 7K15 TYR A -5 UNP Q15722 EXPRESSION TAG SEQADV 7K15 LYS A -4 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ASP A -3 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ASP A -2 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ASP A -1 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ASP A 0 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ALA A 1 UNP Q15722 EXPRESSION TAG SEQADV 7K15 GLY A 2 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ARG A 3 UNP Q15722 EXPRESSION TAG SEQADV 7K15 ALA A 4 UNP Q15722 EXPRESSION TAG SEQADV 7K15 TRP A 106 UNP Q15722 LEU 106 ENGINEERED MUTATION SEQADV 7K15 TYR A 116 UNP Q15722 SER 116 ENGINEERED MUTATION SEQADV 7K15 ILE A 196 UNP Q15722 ALA 196 ENGINEERED MUTATION SEQADV 7K15 ALA A 1002 UNP P00323 PRO 2 ENGINEERED MUTATION SEQADV 7K15 TRP A 1098 UNP P00323 TYR 98 ENGINEERED MUTATION SEQADV 7K15 ARG A 1149 UNP P00323 LINKER SEQADV 7K15 ARG A 1150 UNP P00323 LINKER SEQADV 7K15 PHE A 287 UNP Q15722 CYS 287 ENGINEERED MUTATION SEQADV 7K15 ALA A 310 UNP Q15722 SER 310 ENGINEERED MUTATION SEQADV 7K15 GLU A 311 UNP Q15722 EXPRESSION TAG SEQADV 7K15 PHE A 312 UNP Q15722 EXPRESSION TAG SEQADV 7K15 LEU A 313 UNP Q15722 EXPRESSION TAG SEQADV 7K15 GLU A 314 UNP Q15722 EXPRESSION TAG SEQADV 7K15 VAL A 315 UNP Q15722 EXPRESSION TAG SEQADV 7K15 LEU A 316 UNP Q15722 EXPRESSION TAG SEQADV 7K15 PHE A 317 UNP Q15722 EXPRESSION TAG SEQADV 7K15 GLN A 318 UNP Q15722 EXPRESSION TAG SEQRES 1 A 490 MET LYS THR ILE ILE ALA LEU SER TYR ILE PHE CYS LEU SEQRES 2 A 490 VAL PHE ALA ASP TYR LYS ASP ASP ASP ASP ALA GLY ARG SEQRES 3 A 490 ALA SER SER ALA ALA PRO PRO SER LEU GLY VAL GLU PHE SEQRES 4 A 490 ILE SER LEU LEU ALA ILE ILE LEU LEU SER VAL ALA LEU SEQRES 5 A 490 ALA VAL GLY LEU PRO GLY ASN SER PHE VAL VAL TRP SER SEQRES 6 A 490 ILE LEU LYS ARG MET GLN LYS ARG SER VAL THR ALA LEU SEQRES 7 A 490 MET VAL LEU ASN LEU ALA LEU ALA ASP LEU ALA VAL LEU SEQRES 8 A 490 LEU THR ALA PRO PHE PHE LEU HIS PHE LEU ALA GLN GLY SEQRES 9 A 490 THR TRP SER PHE GLY LEU ALA GLY CYS ARG LEU CYS HIS SEQRES 10 A 490 TYR VAL CYS GLY VAL SER MET TYR ALA SER VAL TRP LEU SEQRES 11 A 490 ILE THR ALA MET SER LEU ASP ARG TYR LEU ALA VAL ALA SEQRES 12 A 490 ARG PRO PHE VAL SER GLN LYS LEU ARG THR LYS ALA MET SEQRES 13 A 490 ALA ARG ARG VAL LEU ALA GLY ILE TRP VAL LEU SER PHE SEQRES 14 A 490 LEU LEU ALA THR PRO VAL LEU ALA TYR ARG THR VAL VAL SEQRES 15 A 490 PRO TRP LYS THR ASN MET SER LEU CYS PHE PRO ARG TYR SEQRES 16 A 490 PRO SER GLU GLY HIS ARG ALA PHE HIS LEU ILE PHE GLU SEQRES 17 A 490 ALA VAL THR GLY PHE LEU LEU PRO PHE LEU ILE VAL VAL SEQRES 18 A 490 ALA SER TYR SER ASP ILE GLY ARG ARG LEU GLN ALA ARG SEQRES 19 A 490 ARG ALA LYS ALA LEU ILE VAL TYR GLY SER THR THR GLY SEQRES 20 A 490 ASN THR GLU TYR THR ALA GLU THR ILE ALA ARG GLU LEU SEQRES 21 A 490 ALA ASP ALA GLY TYR GLU VAL ASP SER ARG ASP ALA ALA SEQRES 22 A 490 SER VAL GLU ALA GLY GLY LEU PHE GLU GLY PHE ASP LEU SEQRES 23 A 490 VAL LEU LEU GLY CYS SER THR TRP GLY ASP ASP SER ILE SEQRES 24 A 490 GLU LEU GLN ASP ASP PHE ILE PRO LEU PHE ASP SER LEU SEQRES 25 A 490 GLU GLU THR GLY ALA GLN GLY ARG LYS VAL ALA CYS PHE SEQRES 26 A 490 GLY CYS GLY ASP SER SER TRP GLU TYR PHE CYS GLY ALA SEQRES 27 A 490 VAL ASP ALA ILE GLU GLU LYS LEU LYS ASN LEU GLY ALA SEQRES 28 A 490 GLU ILE VAL GLN ASP GLY LEU ARG ILE ASP GLY ASP PRO SEQRES 29 A 490 ARG ALA ALA ARG ASP ASP ILE VAL GLY TRP ALA HIS ASP SEQRES 30 A 490 VAL ARG GLY ALA ILE ARG ARG PHE ARG ARG SER ARG ARG SEQRES 31 A 490 THR GLY ARG LEU VAL VAL LEU ILE ILE LEU THR PHE ALA SEQRES 32 A 490 ALA PHE TRP LEU PRO TYR HIS VAL VAL ASN LEU ALA GLU SEQRES 33 A 490 ALA GLY ARG ALA LEU ALA GLY GLN ALA ALA GLY LEU GLY SEQRES 34 A 490 LEU VAL GLY LYS ARG LEU SER LEU ALA ARG ASN VAL LEU SEQRES 35 A 490 ILE ALA LEU ALA PHE LEU SER SER SER VAL ASN PRO VAL SEQRES 36 A 490 LEU TYR ALA PHE ALA GLY GLY GLY LEU LEU ARG SER ALA SEQRES 37 A 490 GLY VAL GLY PHE VAL ALA LYS LEU LEU GLU GLY THR GLY SEQRES 38 A 490 ALA GLU PHE LEU GLU VAL LEU PHE GLN HET VRJ A2101 35 HET NA A2102 1 HET FMN A2103 31 HET OLA A2104 12 HET OLC A2105 13 HET OLC A2106 25 HET 1PE A2107 16 HET 2PE A2108 28 HET P6G A2109 19 HETNAM VRJ N-(TERT-BUTYLSULFONYL)-4-FLUORO-2-{(3S,4R)-4-HYDROXY-3- HETNAM 2 VRJ [(PYRIDIN-2-YL)METHYL]-3,4-DIHYDRO-2H-1-BENZOPYRAN-7- HETNAM 3 VRJ YL}BENZAMIDE HETNAM NA SODIUM ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM OLA OLEIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM 2PE NONAETHYLENE GLYCOL HETNAM P6G HEXAETHYLENE GLYCOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN 1PE PEG400 HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 VRJ C26 H27 F N2 O5 S FORMUL 3 NA NA 1+ FORMUL 4 FMN C17 H21 N4 O9 P FORMUL 5 OLA C18 H34 O2 FORMUL 6 OLC 2(C21 H40 O4) FORMUL 8 1PE C10 H22 O6 FORMUL 9 2PE C18 H38 O10 FORMUL 10 P6G C12 H26 O7 FORMUL 11 HOH *5(H2 O) HELIX 1 AA1 GLY A 13 LYS A 45 1 33 HELIX 2 AA2 SER A 51 LEU A 69 1 19 HELIX 3 AA3 THR A 70 GLY A 81 1 12 HELIX 4 AA4 PHE A 85 ARG A 121 1 37 HELIX 5 AA5 ARG A 121 ARG A 129 1 9 HELIX 6 AA6 THR A 130 ALA A 149 1 20 HELIX 7 AA7 PRO A 151 TYR A 155 1 5 HELIX 8 AA8 SER A 174 PHE A 190 1 17 HELIX 9 AA9 PHE A 190 GLN A 209 1 20 HELIX 10 AB1 GLY A 1013 ALA A 1029 1 17 HELIX 11 AB2 ALA A 1039 VAL A 1041 5 3 HELIX 12 AB3 PHE A 1071 SER A 1077 1 7 HELIX 13 AB4 LEU A 1078 GLY A 1082 5 5 HELIX 14 AB5 CYS A 1102 LEU A 1115 1 14 HELIX 15 AB6 PRO A 1130 ALA A 1132 5 3 HELIX 16 AB7 ALA A 1133 ARG A 1149 1 17 HELIX 17 AB8 GLY A 220 ALA A 250 1 31 HELIX 18 AB9 VAL A 259 SER A 278 1 20 HELIX 19 AC1 SER A 279 LEU A 293 1 15 HELIX 20 AC2 ARG A 294 ALA A 296 5 3 HELIX 21 AC3 GLY A 297 GLU A 306 1 10 HELIX 22 AC4 GLY A 309 PHE A 317 1 9 SHEET 1 AA1 2 ARG A 156 PRO A 160 0 SHEET 2 AA1 2 SER A 166 PRO A 170 -1 O LEU A 167 N VAL A 159 SHEET 1 AA2 5 TYR A1031 ASP A1037 0 SHEET 2 AA2 5 ALA A1002 GLY A1009 1 N ILE A1006 O ASP A1034 SHEET 3 AA2 5 LEU A1052 CYS A1057 1 O LEU A1054 N LEU A1005 SHEET 4 AA2 5 LYS A1087 GLY A1094 1 O PHE A1091 N LEU A1055 SHEET 5 AA2 5 GLU A1118 ILE A1119 1 O GLU A1118 N VAL A1088 SHEET 1 AA3 5 TYR A1031 ASP A1037 0 SHEET 2 AA3 5 ALA A1002 GLY A1009 1 N ILE A1006 O ASP A1034 SHEET 3 AA3 5 LEU A1052 CYS A1057 1 O LEU A1054 N LEU A1005 SHEET 4 AA3 5 LYS A1087 GLY A1094 1 O PHE A1091 N LEU A1055 SHEET 5 AA3 5 LEU A1124 ASP A1127 1 O LEU A1124 N CYS A1090 SSBOND 1 CYS A 90 CYS A 168 1555 1555 2.03 LINK OD1 ASP A 64 NA NA A2102 1555 1555 2.36 LINK OG SER A 104 NA NA A2102 1555 1555 2.74 LINK NA NA A2102 O HOH A2205 1555 1555 2.46 CRYST1 70.770 82.670 127.480 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014130 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007844 0.00000