data_7K16 # _entry.id 7K16 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7K16 pdb_00007k16 10.2210/pdb7k16/pdb WWPDB D_1000251023 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7K16 _pdbx_database_status.recvd_initial_deposition_date 2020-09-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category RNA-Puzzles _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jones, R.A.' 1 0000-0002-7666-2014 'Kieft, J.S.' 2 0000-0002-3718-1891 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Rna _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 54 _citation.page_last 65 _citation.title 'Different tertiary interactions create the same important 3D features in a distinct flavivirus xrRNA.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.077065.120 _citation.pdbx_database_id_PubMed 33004436 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jones, R.A.' 1 ? primary 'Steckelberg, A.L.' 2 ? primary 'Vicens, Q.' 3 ? primary 'Szucs, M.J.' 4 ? primary 'Akiyama, B.M.' 5 ? primary 'Kieft, J.S.' 6 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7K16 _cell.details ? _cell.formula_units_Z ? _cell.length_a 79.100 _cell.length_a_esd ? _cell.length_b 79.100 _cell.length_b_esd ? _cell.length_c 40.690 _cell.length_c_esd ? _cell.volume 220481.060 _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ;P 31 2" ; _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (51-MER)' 16389.844 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(5GP)GCAAGGUACGGCGAAAGCCGUAGGGGCUUGAGAACCCCCCCUCCCCACUC' _entity_poly.pdbx_seq_one_letter_code_can XGCAAGGUACGGCGAAAGCCGUAGGGGCUUGAGAACCCCCCCUCCCCACUC _entity_poly.pdbx_strand_id P _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 5GP n 1 2 G n 1 3 C n 1 4 A n 1 5 A n 1 6 G n 1 7 G n 1 8 U n 1 9 A n 1 10 C n 1 11 G n 1 12 G n 1 13 C n 1 14 G n 1 15 A n 1 16 A n 1 17 A n 1 18 G n 1 19 C n 1 20 C n 1 21 G n 1 22 U n 1 23 A n 1 24 G n 1 25 G n 1 26 G n 1 27 G n 1 28 C n 1 29 U n 1 30 U n 1 31 G n 1 32 A n 1 33 G n 1 34 A n 1 35 A n 1 36 C n 1 37 C n 1 38 C n 1 39 C n 1 40 C n 1 41 C n 1 42 C n 1 43 U n 1 44 C n 1 45 C n 1 46 C n 1 47 C n 1 48 A n 1 49 C n 1 50 U n 1 51 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 51 _pdbx_entity_src_syn.organism_scientific 'Tamana bat virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 161675 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7K16 _struct_ref.pdbx_db_accession 7K16 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7K16 _struct_ref_seq.pdbx_strand_id P _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 51 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7K16 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 51 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 51 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7K16 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Mg2+chloride hexahydrate, 0.1M HEPES sodium (pH 7.5), and 30% v/v Polyethylene glycol 400' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RDI CMOS_8M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-02-25 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0972 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0972 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 42.01 _reflns.entry_id 7K16 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 39.55 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8806 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.90 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 21.2 _reflns.pdbx_Rmerge_I_obs 0.09495 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 27.90 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.09728 _reflns.pdbx_Rpim_I_all 0.02102 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.175 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.15 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 875 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.694 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 19.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.739 _reflns_shell.pdbx_Rpim_I_all 0.3905 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.779 _reflns_shell.pdbx_CC_star 0.936 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 42.71 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7K16 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.10 _refine.ls_d_res_low 39.55 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16607 _refine.ls_number_reflns_R_free 1423 _refine.ls_number_reflns_R_work 15184 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.82 _refine.ls_percent_reflns_R_free 8.57 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1918 _refine.ls_R_factor_R_free 0.2463 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1867 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2OIU _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.4227 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2722 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 39.55 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 1148 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1088 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0091 ? 1215 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.2393 ? 1893 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0509 ? 254 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0145 ? 51 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.4142 ? 609 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.10 2.18 . . 142 1539 99.88 . . . 0.2868 . 0.2695 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.18 2.26 . . 143 1504 99.70 . . . 0.3664 . 0.2874 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.26 2.37 . . 148 1493 99.33 . . . 0.3052 . 0.2626 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.37 2.49 . . 142 1508 99.70 . . . 0.3063 . 0.2414 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.49 2.65 . . 144 1533 99.82 . . . 0.3794 . 0.2427 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.65 2.85 . . 140 1528 99.76 . . . 0.2796 . 0.2335 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.85 3.14 . . 138 1499 99.88 . . . 0.2388 . 0.1855 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.14 3.59 . . 138 1513 100.00 . . . 0.2235 . 0.1564 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.59 4.52 . . 146 1541 100.00 . . . 0.2007 . 0.1501 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.52 39.55 . . 142 1526 100.00 . . . 0.2298 . 0.1673 . . . . . . . . . . . # _struct.entry_id 7K16 _struct.title 'Tamana Bat Virus xrRNA1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7K16 _struct_keywords.text 'xrRNA, flavivirus, exoribonuclease-resitant, ncRNA, Tamana Bat Virus, XRN1, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A 5GP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? P 5GP 1 P G 2 1_555 ? ? ? ? ? ? ? 1.610 ? ? metalc1 metalc ? ? A C 3 OP1 ? ? ? 1_555 C MG . MG ? ? P C 3 P MG 102 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc2 metalc ? ? A A 4 OP2 ? ? ? 1_555 C MG . MG ? ? P A 4 P MG 102 1_555 ? ? ? ? ? ? ? 1.920 ? ? metalc3 metalc ? ? A C 13 OP1 ? ? ? 1_555 E MG . MG ? ? P C 13 P MG 104 2_545 ? ? ? ? ? ? ? 2.134 ? ? metalc4 metalc ? ? A A 34 OP1 ? ? ? 1_555 B MG . MG ? ? P A 34 P MG 101 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc5 metalc ? ? A C 44 OP2 ? ? ? 1_555 D MG . MG ? ? P C 44 P MG 103 1_555 ? ? ? ? ? ? ? 1.933 ? ? metalc6 metalc ? ? A C 47 OP2 ? ? ? 1_555 E MG . MG ? ? P C 47 P MG 104 1_555 ? ? ? ? ? ? ? 1.933 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 101 P HOH 209 1_555 ? ? ? ? ? ? ? 2.256 ? ? metalc8 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 101 P HOH 215 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc9 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 101 P HOH 218 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc10 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 101 P HOH 220 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc11 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 101 P HOH 221 1_555 ? ? ? ? ? ? ? 1.870 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 102 P HOH 207 1_555 ? ? ? ? ? ? ? 2.018 ? ? metalc13 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 102 P HOH 217 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc14 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 102 P HOH 235 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc15 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 102 P HOH 244 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 103 P HOH 212 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 103 P HOH 226 1_555 ? ? ? ? ? ? ? 2.730 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 103 P HOH 229 1_555 ? ? ? ? ? ? ? 1.970 ? ? metalc19 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 103 P HOH 234 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc20 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 103 P HOH 241 1_555 ? ? ? ? ? ? ? 1.869 ? ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 104 P HOH 208 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 104 P HOH 231 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 104 P HOH 245 1_555 ? ? ? ? ? ? ? 2.232 ? ? metalc24 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 104 P HOH 250 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 105 P HOH 232 1_555 ? ? ? ? ? ? ? 1.807 ? ? metalc26 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 105 P HOH 252 1_555 ? ? ? ? ? ? ? 2.306 ? ? metalc27 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 105 P HOH 252 5_555 ? ? ? ? ? ? ? 2.635 ? ? metalc28 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 105 P HOH 254 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc29 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? P MG 105 P HOH 254 5_555 ? ? ? ? ? ? ? 2.449 ? ? metalc30 metalc ? ? G NA . NA ? ? ? 1_555 H HOH . O ? ? P NA 106 P HOH 201 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc31 metalc ? ? G NA . NA ? ? ? 1_555 H HOH . O ? ? P NA 106 P HOH 202 1_555 ? ? ? ? ? ? ? 2.615 ? ? metalc32 metalc ? ? G NA . NA ? ? ? 1_555 H HOH . O ? ? P NA 106 P HOH 210 1_555 ? ? ? ? ? ? ? 2.148 ? ? metalc33 metalc ? ? G NA . NA ? ? ? 1_555 H HOH . O ? ? P NA 106 P HOH 222 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc34 metalc ? ? G NA . NA ? ? ? 1_555 H HOH . O ? ? P NA 106 P HOH 249 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc35 metalc ? ? G NA . NA ? ? ? 1_555 H HOH . O ? ? P NA 106 P HOH 253 1_555 ? ? ? ? ? ? ? 2.370 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 41 N3 ? ? P G 2 P C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 41 O2 ? ? P G 2 P C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 41 N4 ? ? P G 2 P C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 25 O6 ? ? P C 3 P G 25 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog5 hydrog ? ? A A 4 N3 ? ? ? 1_555 A G 33 N2 ? ? P A 4 P G 33 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog6 hydrog ? ? A A 4 N6 ? ? ? 1_555 A C 47 O2 ? ? P A 4 P C 47 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog7 hydrog ? ? A A 5 N6 ? ? ? 1_555 A C 46 O2 ? ? P A 5 P C 46 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog8 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 45 N3 ? ? P G 6 P C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 45 O2 ? ? P G 6 P C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 45 N4 ? ? P G 6 P C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 44 N3 ? ? P G 7 P C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 44 O2 ? ? P G 7 P C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 44 N4 ? ? P G 7 P C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 23 N1 ? ? P U 8 P A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 23 N6 ? ? P U 8 P A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 22 N3 ? ? P A 9 P U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 22 O4 ? ? P A 9 P U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 21 N1 ? ? P C 10 P G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 21 O6 ? ? P C 10 P G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 21 N2 ? ? P C 10 P G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 20 N3 ? ? P G 11 P C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 20 O2 ? ? P G 11 P C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 20 N4 ? ? P G 11 P C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 19 N3 ? ? P G 12 P C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 19 O2 ? ? P G 12 P C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 19 N4 ? ? P G 12 P C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 18 N1 ? ? P C 13 P G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 18 O6 ? ? P C 13 P G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 18 N2 ? ? P C 13 P G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 17 N7 ? ? P G 14 P A 17 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog31 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 40 N3 ? ? P G 24 P C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 40 O2 ? ? P G 24 P C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 40 N4 ? ? P G 24 P C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 39 N3 ? ? P G 25 P C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 39 O2 ? ? P G 25 P C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 39 N4 ? ? P G 25 P C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 38 N3 ? ? P G 26 P C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 38 O2 ? ? P G 26 P C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 38 N4 ? ? P G 26 P C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 37 N3 ? ? P G 27 P C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 37 O2 ? ? P G 27 P C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 37 N4 ? ? P G 27 P C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 28 N3 ? ? ? 1_555 A C 36 N4 ? ? P C 28 P C 36 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog44 hydrog ? ? A U 29 O2 ? ? ? 1_555 A A 35 N6 ? ? P U 29 P A 35 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog45 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 51 N3 ? ? P G 31 P C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 51 O2 ? ? P G 31 P C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 51 N4 ? ? P G 31 P C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 32 N1 ? ? ? 1_555 A U 50 N3 ? ? P A 32 P U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 32 N6 ? ? ? 1_555 A U 50 O4 ? ? P A 32 P U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 49 N3 ? ? P G 33 P C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 49 O2 ? ? P G 33 P C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 49 N4 ? ? P G 33 P C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 7K16 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.012642 _atom_sites.fract_transf_matrix[1][2] 0.007299 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014598 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024576 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 5GP 1 1 1 5GP 5GP P . n A 1 2 G 2 2 2 G G P . n A 1 3 C 3 3 3 C C P . n A 1 4 A 4 4 4 A A P . n A 1 5 A 5 5 5 A A P . n A 1 6 G 6 6 6 G G P . n A 1 7 G 7 7 7 G G P . n A 1 8 U 8 8 8 U U P . n A 1 9 A 9 9 9 A A P . n A 1 10 C 10 10 10 C C P . n A 1 11 G 11 11 11 G G P . n A 1 12 G 12 12 12 G G P . n A 1 13 C 13 13 13 C C P . n A 1 14 G 14 14 14 G G P . n A 1 15 A 15 15 15 A A P . n A 1 16 A 16 16 16 A A P . n A 1 17 A 17 17 17 A A P . n A 1 18 G 18 18 18 G G P . n A 1 19 C 19 19 19 C C P . n A 1 20 C 20 20 20 C C P . n A 1 21 G 21 21 21 G G P . n A 1 22 U 22 22 22 U U P . n A 1 23 A 23 23 23 A A P . n A 1 24 G 24 24 24 G G P . n A 1 25 G 25 25 25 G G P . n A 1 26 G 26 26 26 G G P . n A 1 27 G 27 27 27 G G P . n A 1 28 C 28 28 28 C C P . n A 1 29 U 29 29 29 U U P . n A 1 30 U 30 30 30 U U P . n A 1 31 G 31 31 31 G G P . n A 1 32 A 32 32 32 A A P . n A 1 33 G 33 33 33 G G P . n A 1 34 A 34 34 34 A A P . n A 1 35 A 35 35 35 A A P . n A 1 36 C 36 36 36 C C P . n A 1 37 C 37 37 37 C C P . n A 1 38 C 38 38 38 C C P . n A 1 39 C 39 39 39 C C P . n A 1 40 C 40 40 40 C C P . n A 1 41 C 41 41 41 C C P . n A 1 42 C 42 42 42 C C P . n A 1 43 U 43 43 43 U U P . n A 1 44 C 44 44 44 C C P . n A 1 45 C 45 45 45 C C P . n A 1 46 C 46 46 46 C C P . n A 1 47 C 47 47 47 C C P . n A 1 48 A 48 48 48 A A P . n A 1 49 C 49 49 49 C C P . n A 1 50 U 50 50 50 U U P . n A 1 51 C 51 51 51 C C P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MG P . C 2 MG 1 102 2 MG MG P . D 2 MG 1 103 3 MG MG P . E 2 MG 1 104 4 MG MG P . F 2 MG 1 105 5 MG MG P . G 3 NA 1 106 1 NA NA P . H 4 HOH 1 201 53 HOH HOH P . H 4 HOH 2 202 24 HOH HOH P . H 4 HOH 3 203 9 HOH HOH P . H 4 HOH 4 204 40 HOH HOH P . H 4 HOH 5 205 33 HOH HOH P . H 4 HOH 6 206 10 HOH HOH P . H 4 HOH 7 207 18 HOH HOH P . H 4 HOH 8 208 43 HOH HOH P . H 4 HOH 9 209 16 HOH HOH P . H 4 HOH 10 210 25 HOH HOH P . H 4 HOH 11 211 31 HOH HOH P . H 4 HOH 12 212 28 HOH HOH P . H 4 HOH 13 213 32 HOH HOH P . H 4 HOH 14 214 47 HOH HOH P . H 4 HOH 15 215 22 HOH HOH P . H 4 HOH 16 216 13 HOH HOH P . H 4 HOH 17 217 20 HOH HOH P . H 4 HOH 18 218 17 HOH HOH P . H 4 HOH 19 219 14 HOH HOH P . H 4 HOH 20 220 23 HOH HOH P . H 4 HOH 21 221 15 HOH HOH P . H 4 HOH 22 222 26 HOH HOH P . H 4 HOH 23 223 41 HOH HOH P . H 4 HOH 24 224 11 HOH HOH P . H 4 HOH 25 225 59 HOH HOH P . H 4 HOH 26 226 48 HOH HOH P . H 4 HOH 27 227 34 HOH HOH P . H 4 HOH 28 228 36 HOH HOH P . H 4 HOH 29 229 51 HOH HOH P . H 4 HOH 30 230 35 HOH HOH P . H 4 HOH 31 231 45 HOH HOH P . H 4 HOH 32 232 7 HOH HOH P . H 4 HOH 33 233 29 HOH HOH P . H 4 HOH 34 234 49 HOH HOH P . H 4 HOH 35 235 19 HOH HOH P . H 4 HOH 36 236 55 HOH HOH P . H 4 HOH 37 237 30 HOH HOH P . H 4 HOH 38 238 57 HOH HOH P . H 4 HOH 39 239 46 HOH HOH P . H 4 HOH 40 240 58 HOH HOH P . H 4 HOH 41 241 50 HOH HOH P . H 4 HOH 42 242 39 HOH HOH P . H 4 HOH 43 243 52 HOH HOH P . H 4 HOH 44 244 21 HOH HOH P . H 4 HOH 45 245 42 HOH HOH P . H 4 HOH 46 246 27 HOH HOH P . H 4 HOH 47 247 37 HOH HOH P . H 4 HOH 48 248 38 HOH HOH P . H 4 HOH 49 249 54 HOH HOH P . H 4 HOH 50 250 44 HOH HOH P . H 4 HOH 51 251 56 HOH HOH P . H 4 HOH 52 252 8 HOH HOH P . H 4 HOH 53 253 12 HOH HOH P . H 4 HOH 54 254 6 HOH HOH P . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A C 3 ? P C 3 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 OP2 ? A A 4 ? P A 4 ? 1_555 94.7 ? 2 OP1 ? A C 3 ? P C 3 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 207 ? 1_555 169.6 ? 3 OP2 ? A A 4 ? P A 4 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 207 ? 1_555 93.8 ? 4 OP1 ? A C 3 ? P C 3 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 217 ? 1_555 88.6 ? 5 OP2 ? A A 4 ? P A 4 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 217 ? 1_555 173.9 ? 6 O ? H HOH . ? P HOH 207 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 217 ? 1_555 82.5 ? 7 OP1 ? A C 3 ? P C 3 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 235 ? 1_555 85.5 ? 8 OP2 ? A A 4 ? P A 4 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 235 ? 1_555 87.3 ? 9 O ? H HOH . ? P HOH 207 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 235 ? 1_555 88.8 ? 10 O ? H HOH . ? P HOH 217 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 235 ? 1_555 87.8 ? 11 OP1 ? A C 3 ? P C 3 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 244 ? 1_555 91.1 ? 12 OP2 ? A A 4 ? P A 4 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 244 ? 1_555 101.1 ? 13 O ? H HOH . ? P HOH 207 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 244 ? 1_555 93.3 ? 14 O ? H HOH . ? P HOH 217 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 244 ? 1_555 84.0 ? 15 O ? H HOH . ? P HOH 235 ? 1_555 MG ? C MG . ? P MG 102 ? 1_555 O ? H HOH . ? P HOH 244 ? 1_555 171.1 ? 16 OP1 ? A C 13 ? P C 13 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 OP2 ? A C 47 ? P C 47 ? 1_555 40.5 ? 17 OP1 ? A C 13 ? P C 13 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 208 ? 1_555 42.6 ? 18 OP2 ? A C 47 ? P C 47 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 208 ? 1_555 2.1 ? 19 OP1 ? A C 13 ? P C 13 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 231 ? 1_555 44.6 ? 20 OP2 ? A C 47 ? P C 47 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 231 ? 1_555 4.1 ? 21 O ? H HOH . ? P HOH 208 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 231 ? 1_555 2.0 ? 22 OP1 ? A C 13 ? P C 13 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 245 ? 1_555 43.6 ? 23 OP2 ? A C 47 ? P C 47 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 245 ? 1_555 4.3 ? 24 O ? H HOH . ? P HOH 208 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 245 ? 1_555 3.0 ? 25 O ? H HOH . ? P HOH 231 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 245 ? 1_555 3.3 ? 26 OP1 ? A C 13 ? P C 13 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 250 ? 1_555 44.1 ? 27 OP2 ? A C 47 ? P C 47 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 250 ? 1_555 4.9 ? 28 O ? H HOH . ? P HOH 208 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 250 ? 1_555 3.9 ? 29 O ? H HOH . ? P HOH 231 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 250 ? 1_555 3.5 ? 30 O ? H HOH . ? P HOH 245 ? 1_555 MG ? E MG . ? P MG 104 ? 2_545 O ? H HOH . ? P HOH 250 ? 1_555 6.6 ? 31 OP1 ? A A 34 ? P A 34 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 209 ? 1_555 90.6 ? 32 OP1 ? A A 34 ? P A 34 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 215 ? 1_555 168.3 ? 33 O ? H HOH . ? P HOH 209 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 215 ? 1_555 94.0 ? 34 OP1 ? A A 34 ? P A 34 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 218 ? 1_555 89.7 ? 35 O ? H HOH . ? P HOH 209 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 218 ? 1_555 177.6 ? 36 O ? H HOH . ? P HOH 215 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 218 ? 1_555 86.2 ? 37 OP1 ? A A 34 ? P A 34 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 220 ? 1_555 83.0 ? 38 O ? H HOH . ? P HOH 209 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 220 ? 1_555 90.5 ? 39 O ? H HOH . ? P HOH 215 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 220 ? 1_555 86.2 ? 40 O ? H HOH . ? P HOH 218 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 220 ? 1_555 91.9 ? 41 OP1 ? A A 34 ? P A 34 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 221 ? 1_555 94.8 ? 42 O ? H HOH . ? P HOH 209 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 221 ? 1_555 85.5 ? 43 O ? H HOH . ? P HOH 215 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 221 ? 1_555 96.3 ? 44 O ? H HOH . ? P HOH 218 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 221 ? 1_555 92.0 ? 45 O ? H HOH . ? P HOH 220 ? 1_555 MG ? B MG . ? P MG 101 ? 1_555 O ? H HOH . ? P HOH 221 ? 1_555 175.5 ? 46 OP2 ? A C 44 ? P C 44 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 212 ? 1_555 82.6 ? 47 OP2 ? A C 44 ? P C 44 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 226 ? 1_555 164.6 ? 48 O ? H HOH . ? P HOH 212 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 226 ? 1_555 86.4 ? 49 OP2 ? A C 44 ? P C 44 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 229 ? 1_555 89.4 ? 50 O ? H HOH . ? P HOH 212 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 229 ? 1_555 71.1 ? 51 O ? H HOH . ? P HOH 226 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 229 ? 1_555 76.8 ? 52 OP2 ? A C 44 ? P C 44 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 234 ? 1_555 101.9 ? 53 O ? H HOH . ? P HOH 212 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 234 ? 1_555 163.0 ? 54 O ? H HOH . ? P HOH 226 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 234 ? 1_555 85.7 ? 55 O ? H HOH . ? P HOH 229 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 234 ? 1_555 92.5 ? 56 OP2 ? A C 44 ? P C 44 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 241 ? 1_555 120.1 ? 57 O ? H HOH . ? P HOH 212 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 241 ? 1_555 96.0 ? 58 O ? H HOH . ? P HOH 226 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 241 ? 1_555 71.7 ? 59 O ? H HOH . ? P HOH 229 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 241 ? 1_555 146.7 ? 60 O ? H HOH . ? P HOH 234 ? 1_555 MG ? D MG . ? P MG 103 ? 1_555 O ? H HOH . ? P HOH 241 ? 1_555 95.7 ? 61 O ? H HOH . ? P HOH 232 ? 1_555 MG ? F MG . ? P MG 105 ? 1_555 O ? H HOH . ? P HOH 252 ? 1_555 91.4 ? 62 O ? H HOH . ? P HOH 232 ? 1_555 MG ? F MG . ? P MG 105 ? 1_555 O ? H HOH . ? P HOH 252 ? 5_555 65.3 ? 63 O ? H HOH . ? P HOH 252 ? 1_555 MG ? F MG . ? P MG 105 ? 1_555 O ? H HOH . ? P HOH 252 ? 5_555 78.4 ? 64 O ? H HOH . ? P HOH 232 ? 1_555 MG ? F MG . ? P MG 105 ? 1_555 O ? H HOH . ? P HOH 254 ? 1_555 164.2 ? 65 O ? H HOH . ? P HOH 252 ? 1_555 MG ? F MG . ? P MG 105 ? 1_555 O ? H HOH . ? P HOH 254 ? 1_555 89.2 ? 66 O ? H HOH . ? P HOH 252 ? 5_555 MG ? F MG . ? P MG 105 ? 1_555 O ? H HOH . ? P HOH 254 ? 1_555 130.1 ? 67 O ? H HOH . ? P HOH 232 ? 1_555 MG ? F MG . ? P MG 105 ? 1_555 O ? H HOH . ? P HOH 254 ? 5_555 109.4 ? 68 O ? H HOH . ? P HOH 252 ? 1_555 MG ? F MG . ? P MG 105 ? 1_555 O ? H HOH . ? P HOH 254 ? 5_555 137.7 ? 69 O ? H HOH . ? P HOH 252 ? 5_555 MG ? F MG . ? P MG 105 ? 1_555 O ? H HOH . ? P HOH 254 ? 5_555 77.9 ? 70 O ? H HOH . ? P HOH 254 ? 1_555 MG ? F MG . ? P MG 105 ? 1_555 O ? H HOH . ? P HOH 254 ? 5_555 80.1 ? 71 O ? H HOH . ? P HOH 201 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 202 ? 1_555 93.3 ? 72 O ? H HOH . ? P HOH 201 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 210 ? 1_555 98.7 ? 73 O ? H HOH . ? P HOH 202 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 210 ? 1_555 82.1 ? 74 O ? H HOH . ? P HOH 201 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 222 ? 1_555 101.4 ? 75 O ? H HOH . ? P HOH 202 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 222 ? 1_555 160.8 ? 76 O ? H HOH . ? P HOH 210 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 222 ? 1_555 107.5 ? 77 O ? H HOH . ? P HOH 201 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 249 ? 1_555 166.5 ? 78 O ? H HOH . ? P HOH 202 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 249 ? 1_555 77.2 ? 79 O ? H HOH . ? P HOH 210 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 249 ? 1_555 70.7 ? 80 O ? H HOH . ? P HOH 222 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 249 ? 1_555 90.0 ? 81 O ? H HOH . ? P HOH 201 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 253 ? 1_555 101.5 ? 82 O ? H HOH . ? P HOH 202 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 253 ? 1_555 79.0 ? 83 O ? H HOH . ? P HOH 210 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 253 ? 1_555 153.0 ? 84 O ? H HOH . ? P HOH 222 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 253 ? 1_555 85.9 ? 85 O ? H HOH . ? P HOH 249 ? 1_555 NA ? G NA . ? P NA 106 ? 1_555 O ? H HOH . ? P HOH 253 ? 1_555 86.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-10-14 2 'Structure model' 1 1 2020-12-30 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation.year' 6 2 'Structure model' '_citation_author.identifier_ORCID' 7 3 'Structure model' '_database_2.pdbx_DOI' 8 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+1/3 3 -x+y,-x,z+2/3 4 x-y,-y,-z+2/3 5 -x,-x+y,-z+1/3 6 y,x,-z # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 46.3862311397 _pdbx_refine_tls.origin_y -11.5807944004 _pdbx_refine_tls.origin_z 21.3647912546 _pdbx_refine_tls.T[1][1] 0.374739413248 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0204636695567 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.026892734432 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.294129864976 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.00666270246797 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.333194632205 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 3.41119590679 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -1.98326955535 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.775992405133 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.15381775044 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.47659958355 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.415240556063 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0649704357475 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.0161906878516 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.307355470804 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.0303394429154 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.00820123372835 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.165727022981 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.0904498802259 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.00318787539878 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0583137039136 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.16_3549 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'VERSION Mar 15, 2019 BUILT=20191015' 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'VERSION Mar 15, 2019 BUILT=20191015' 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.16_3549 4 # _pdbx_entry_details.entry_id 7K16 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP1 _pdbx_validate_close_contact.auth_asym_id_1 P _pdbx_validate_close_contact.auth_comp_id_1 C _pdbx_validate_close_contact.auth_seq_id_1 36 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 P _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" P G 11 ? ? P P G 11 ? ? OP2 P G 11 ? ? 99.59 105.70 -6.11 0.90 N 2 1 C6 P C 28 ? ? N1 P C 28 ? ? C2 P C 28 ? ? 117.55 120.30 -2.75 0.40 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GP P P N N 1 5GP O1P O N N 2 5GP O2P O N N 3 5GP O3P O N N 4 5GP "O5'" O N N 5 5GP "C5'" C N N 6 5GP "C4'" C N R 7 5GP "O4'" O N N 8 5GP "C3'" C N S 9 5GP "O3'" O N N 10 5GP "C2'" C N R 11 5GP "O2'" O N N 12 5GP "C1'" C N R 13 5GP N9 N Y N 14 5GP C8 C Y N 15 5GP N7 N Y N 16 5GP C5 C Y N 17 5GP C6 C N N 18 5GP O6 O N N 19 5GP N1 N N N 20 5GP C2 C N N 21 5GP N2 N N N 22 5GP N3 N N N 23 5GP C4 C Y N 24 5GP HOP2 H N N 25 5GP HOP3 H N N 26 5GP "H5'1" H N N 27 5GP "H5'2" H N N 28 5GP "H4'" H N N 29 5GP "H3'" H N N 30 5GP "HO3'" H N N 31 5GP "H2'" H N N 32 5GP "HO2'" H N N 33 5GP "H1'" H N N 34 5GP H8 H N N 35 5GP HN1 H N N 36 5GP HN21 H N N 37 5GP HN22 H N N 38 A OP3 O N N 39 A P P N N 40 A OP1 O N N 41 A OP2 O N N 42 A "O5'" O N N 43 A "C5'" C N N 44 A "C4'" C N R 45 A "O4'" O N N 46 A "C3'" C N S 47 A "O3'" O N N 48 A "C2'" C N R 49 A "O2'" O N N 50 A "C1'" C N R 51 A N9 N Y N 52 A C8 C Y N 53 A N7 N Y N 54 A C5 C Y N 55 A C6 C Y N 56 A N6 N N N 57 A N1 N Y N 58 A C2 C Y N 59 A N3 N Y N 60 A C4 C Y N 61 A HOP3 H N N 62 A HOP2 H N N 63 A "H5'" H N N 64 A "H5''" H N N 65 A "H4'" H N N 66 A "H3'" H N N 67 A "HO3'" H N N 68 A "H2'" H N N 69 A "HO2'" H N N 70 A "H1'" H N N 71 A H8 H N N 72 A H61 H N N 73 A H62 H N N 74 A H2 H N N 75 C OP3 O N N 76 C P P N N 77 C OP1 O N N 78 C OP2 O N N 79 C "O5'" O N N 80 C "C5'" C N N 81 C "C4'" C N R 82 C "O4'" O N N 83 C "C3'" C N S 84 C "O3'" O N N 85 C "C2'" C N R 86 C "O2'" O N N 87 C "C1'" C N R 88 C N1 N N N 89 C C2 C N N 90 C O2 O N N 91 C N3 N N N 92 C C4 C N N 93 C N4 N N N 94 C C5 C N N 95 C C6 C N N 96 C HOP3 H N N 97 C HOP2 H N N 98 C "H5'" H N N 99 C "H5''" H N N 100 C "H4'" H N N 101 C "H3'" H N N 102 C "HO3'" H N N 103 C "H2'" H N N 104 C "HO2'" H N N 105 C "H1'" H N N 106 C H41 H N N 107 C H42 H N N 108 C H5 H N N 109 C H6 H N N 110 G OP3 O N N 111 G P P N N 112 G OP1 O N N 113 G OP2 O N N 114 G "O5'" O N N 115 G "C5'" C N N 116 G "C4'" C N R 117 G "O4'" O N N 118 G "C3'" C N S 119 G "O3'" O N N 120 G "C2'" C N R 121 G "O2'" O N N 122 G "C1'" C N R 123 G N9 N Y N 124 G C8 C Y N 125 G N7 N Y N 126 G C5 C Y N 127 G C6 C N N 128 G O6 O N N 129 G N1 N N N 130 G C2 C N N 131 G N2 N N N 132 G N3 N N N 133 G C4 C Y N 134 G HOP3 H N N 135 G HOP2 H N N 136 G "H5'" H N N 137 G "H5''" H N N 138 G "H4'" H N N 139 G "H3'" H N N 140 G "HO3'" H N N 141 G "H2'" H N N 142 G "HO2'" H N N 143 G "H1'" H N N 144 G H8 H N N 145 G H1 H N N 146 G H21 H N N 147 G H22 H N N 148 HOH O O N N 149 HOH H1 H N N 150 HOH H2 H N N 151 MG MG MG N N 152 NA NA NA N N 153 U OP3 O N N 154 U P P N N 155 U OP1 O N N 156 U OP2 O N N 157 U "O5'" O N N 158 U "C5'" C N N 159 U "C4'" C N R 160 U "O4'" O N N 161 U "C3'" C N S 162 U "O3'" O N N 163 U "C2'" C N R 164 U "O2'" O N N 165 U "C1'" C N R 166 U N1 N N N 167 U C2 C N N 168 U O2 O N N 169 U N3 N N N 170 U C4 C N N 171 U O4 O N N 172 U C5 C N N 173 U C6 C N N 174 U HOP3 H N N 175 U HOP2 H N N 176 U "H5'" H N N 177 U "H5''" H N N 178 U "H4'" H N N 179 U "H3'" H N N 180 U "HO3'" H N N 181 U "H2'" H N N 182 U "HO2'" H N N 183 U "H1'" H N N 184 U H3 H N N 185 U H5 H N N 186 U H6 H N N 187 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P O1P doub N N 1 5GP P O2P sing N N 2 5GP P O3P sing N N 3 5GP P "O5'" sing N N 4 5GP O2P HOP2 sing N N 5 5GP O3P HOP3 sing N N 6 5GP "O5'" "C5'" sing N N 7 5GP "C5'" "C4'" sing N N 8 5GP "C5'" "H5'1" sing N N 9 5GP "C5'" "H5'2" sing N N 10 5GP "C4'" "O4'" sing N N 11 5GP "C4'" "C3'" sing N N 12 5GP "C4'" "H4'" sing N N 13 5GP "O4'" "C1'" sing N N 14 5GP "C3'" "O3'" sing N N 15 5GP "C3'" "C2'" sing N N 16 5GP "C3'" "H3'" sing N N 17 5GP "O3'" "HO3'" sing N N 18 5GP "C2'" "O2'" sing N N 19 5GP "C2'" "C1'" sing N N 20 5GP "C2'" "H2'" sing N N 21 5GP "O2'" "HO2'" sing N N 22 5GP "C1'" N9 sing N N 23 5GP "C1'" "H1'" sing N N 24 5GP N9 C8 sing Y N 25 5GP N9 C4 sing Y N 26 5GP C8 N7 doub Y N 27 5GP C8 H8 sing N N 28 5GP N7 C5 sing Y N 29 5GP C5 C6 sing N N 30 5GP C5 C4 doub Y N 31 5GP C6 O6 doub N N 32 5GP C6 N1 sing N N 33 5GP N1 C2 sing N N 34 5GP N1 HN1 sing N N 35 5GP C2 N2 sing N N 36 5GP C2 N3 doub N N 37 5GP N2 HN21 sing N N 38 5GP N2 HN22 sing N N 39 5GP N3 C4 sing N N 40 A OP3 P sing N N 41 A OP3 HOP3 sing N N 42 A P OP1 doub N N 43 A P OP2 sing N N 44 A P "O5'" sing N N 45 A OP2 HOP2 sing N N 46 A "O5'" "C5'" sing N N 47 A "C5'" "C4'" sing N N 48 A "C5'" "H5'" sing N N 49 A "C5'" "H5''" sing N N 50 A "C4'" "O4'" sing N N 51 A "C4'" "C3'" sing N N 52 A "C4'" "H4'" sing N N 53 A "O4'" "C1'" sing N N 54 A "C3'" "O3'" sing N N 55 A "C3'" "C2'" sing N N 56 A "C3'" "H3'" sing N N 57 A "O3'" "HO3'" sing N N 58 A "C2'" "O2'" sing N N 59 A "C2'" "C1'" sing N N 60 A "C2'" "H2'" sing N N 61 A "O2'" "HO2'" sing N N 62 A "C1'" N9 sing N N 63 A "C1'" "H1'" sing N N 64 A N9 C8 sing Y N 65 A N9 C4 sing Y N 66 A C8 N7 doub Y N 67 A C8 H8 sing N N 68 A N7 C5 sing Y N 69 A C5 C6 sing Y N 70 A C5 C4 doub Y N 71 A C6 N6 sing N N 72 A C6 N1 doub Y N 73 A N6 H61 sing N N 74 A N6 H62 sing N N 75 A N1 C2 sing Y N 76 A C2 N3 doub Y N 77 A C2 H2 sing N N 78 A N3 C4 sing Y N 79 C OP3 P sing N N 80 C OP3 HOP3 sing N N 81 C P OP1 doub N N 82 C P OP2 sing N N 83 C P "O5'" sing N N 84 C OP2 HOP2 sing N N 85 C "O5'" "C5'" sing N N 86 C "C5'" "C4'" sing N N 87 C "C5'" "H5'" sing N N 88 C "C5'" "H5''" sing N N 89 C "C4'" "O4'" sing N N 90 C "C4'" "C3'" sing N N 91 C "C4'" "H4'" sing N N 92 C "O4'" "C1'" sing N N 93 C "C3'" "O3'" sing N N 94 C "C3'" "C2'" sing N N 95 C "C3'" "H3'" sing N N 96 C "O3'" "HO3'" sing N N 97 C "C2'" "O2'" sing N N 98 C "C2'" "C1'" sing N N 99 C "C2'" "H2'" sing N N 100 C "O2'" "HO2'" sing N N 101 C "C1'" N1 sing N N 102 C "C1'" "H1'" sing N N 103 C N1 C2 sing N N 104 C N1 C6 sing N N 105 C C2 O2 doub N N 106 C C2 N3 sing N N 107 C N3 C4 doub N N 108 C C4 N4 sing N N 109 C C4 C5 sing N N 110 C N4 H41 sing N N 111 C N4 H42 sing N N 112 C C5 C6 doub N N 113 C C5 H5 sing N N 114 C C6 H6 sing N N 115 G OP3 P sing N N 116 G OP3 HOP3 sing N N 117 G P OP1 doub N N 118 G P OP2 sing N N 119 G P "O5'" sing N N 120 G OP2 HOP2 sing N N 121 G "O5'" "C5'" sing N N 122 G "C5'" "C4'" sing N N 123 G "C5'" "H5'" sing N N 124 G "C5'" "H5''" sing N N 125 G "C4'" "O4'" sing N N 126 G "C4'" "C3'" sing N N 127 G "C4'" "H4'" sing N N 128 G "O4'" "C1'" sing N N 129 G "C3'" "O3'" sing N N 130 G "C3'" "C2'" sing N N 131 G "C3'" "H3'" sing N N 132 G "O3'" "HO3'" sing N N 133 G "C2'" "O2'" sing N N 134 G "C2'" "C1'" sing N N 135 G "C2'" "H2'" sing N N 136 G "O2'" "HO2'" sing N N 137 G "C1'" N9 sing N N 138 G "C1'" "H1'" sing N N 139 G N9 C8 sing Y N 140 G N9 C4 sing Y N 141 G C8 N7 doub Y N 142 G C8 H8 sing N N 143 G N7 C5 sing Y N 144 G C5 C6 sing N N 145 G C5 C4 doub Y N 146 G C6 O6 doub N N 147 G C6 N1 sing N N 148 G N1 C2 sing N N 149 G N1 H1 sing N N 150 G C2 N2 sing N N 151 G C2 N3 doub N N 152 G N2 H21 sing N N 153 G N2 H22 sing N N 154 G N3 C4 sing N N 155 HOH O H1 sing N N 156 HOH O H2 sing N N 157 U OP3 P sing N N 158 U OP3 HOP3 sing N N 159 U P OP1 doub N N 160 U P OP2 sing N N 161 U P "O5'" sing N N 162 U OP2 HOP2 sing N N 163 U "O5'" "C5'" sing N N 164 U "C5'" "C4'" sing N N 165 U "C5'" "H5'" sing N N 166 U "C5'" "H5''" sing N N 167 U "C4'" "O4'" sing N N 168 U "C4'" "C3'" sing N N 169 U "C4'" "H4'" sing N N 170 U "O4'" "C1'" sing N N 171 U "C3'" "O3'" sing N N 172 U "C3'" "C2'" sing N N 173 U "C3'" "H3'" sing N N 174 U "O3'" "HO3'" sing N N 175 U "C2'" "O2'" sing N N 176 U "C2'" "C1'" sing N N 177 U "C2'" "H2'" sing N N 178 U "O2'" "HO2'" sing N N 179 U "C1'" N1 sing N N 180 U "C1'" "H1'" sing N N 181 U N1 C2 sing N N 182 U N1 C6 sing N N 183 U C2 O2 doub N N 184 U C2 N3 sing N N 185 U N3 C4 sing N N 186 U N3 H3 sing N N 187 U C4 O4 doub N N 188 U C4 C5 sing N N 189 U C5 C6 doub N N 190 U C5 H5 sing N N 191 U C6 H6 sing N N 192 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7K16 'double helix' 7K16 'a-form double helix' 7K16 tetraloop 7K16 'bulge loop' 7K16 'mismatched base pair' 7K16 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 41 1_555 -0.124 -0.204 0.323 -0.934 -17.319 -3.221 1 P_G2:C41_P P 2 ? P 41 ? 19 1 1 A G 24 1_555 A C 40 1_555 -0.106 -0.220 -0.320 -15.974 -10.867 1.453 2 P_G24:C40_P P 24 ? P 40 ? 19 1 1 A G 25 1_555 A C 39 1_555 -0.333 -0.227 -0.109 -7.925 -10.580 -1.917 3 P_G25:C39_P P 25 ? P 39 ? 19 1 1 A G 26 1_555 A C 38 1_555 -0.199 -0.143 -0.142 -2.340 -11.161 0.270 4 P_G26:C38_P P 26 ? P 38 ? 19 1 1 A G 27 1_555 A C 37 1_555 -0.310 -0.203 -0.132 -14.325 -22.382 -1.367 5 P_G27:C37_P P 27 ? P 37 ? 19 1 1 A C 28 1_555 A C 36 1_555 2.558 -0.905 0.301 -30.659 -16.855 -12.962 6 P_C28:C36_P P 28 ? P 36 ? ? ? 1 A U 29 1_555 A A 35 1_555 5.542 -2.083 2.041 -30.256 8.460 -12.821 7 P_U29:A35_P P 29 ? P 35 ? ? ? 1 A C 49 1_555 A G 33 1_555 0.218 0.013 -0.101 0.235 -6.097 3.149 8 P_C49:G33_P P 49 ? P 33 ? 19 1 1 A U 50 1_555 A A 32 1_555 0.239 -0.109 0.046 -3.433 -3.892 2.740 9 P_U50:A32_P P 50 ? P 32 ? 20 1 1 A C 51 1_555 A G 31 1_555 1.346 -0.198 -0.239 12.695 -7.794 8.127 10 P_C51:G31_P P 51 ? P 31 ? 19 1 1 A A 4 1_555 A C 47 1_555 -5.987 -3.630 -0.230 21.697 -20.179 -33.164 11 P_A4:C47_P P 4 ? P 47 ? ? ? 1 A A 5 1_555 A C 46 1_555 -4.875 -1.026 0.281 12.574 -19.965 -1.751 12 P_A5:C46_P P 5 ? P 46 ? ? 1 1 A G 6 1_555 A C 45 1_555 -0.068 -0.174 -0.195 -3.642 -9.680 1.071 13 P_G6:C45_P P 6 ? P 45 ? 19 1 1 A G 7 1_555 A C 44 1_555 -0.185 -0.241 -0.223 -13.353 -19.100 -0.670 14 P_G7:C44_P P 7 ? P 44 ? 19 1 1 A U 8 1_555 A A 23 1_555 -0.182 -0.122 -0.106 -5.663 -0.617 2.197 15 P_U8:A23_P P 8 ? P 23 ? 20 1 1 A A 9 1_555 A U 22 1_555 -0.042 -0.044 -0.138 -5.913 -21.850 7.958 16 P_A9:U22_P P 9 ? P 22 ? 20 1 1 A C 10 1_555 A G 21 1_555 0.375 -0.275 -0.030 -3.562 -14.618 -2.824 17 P_C10:G21_P P 10 ? P 21 ? 19 1 1 A G 11 1_555 A C 20 1_555 -0.285 -0.118 -0.323 -5.882 -9.053 -0.347 18 P_G11:C20_P P 11 ? P 20 ? 19 1 1 A G 12 1_555 A C 19 1_555 -0.251 -0.252 -0.024 -12.933 -13.146 -0.620 19 P_G12:C19_P P 12 ? P 19 ? 19 1 1 A C 13 1_555 A G 18 1_555 0.451 -0.217 0.202 -6.441 -2.929 0.323 20 P_C13:G18_P P 13 ? P 18 ? 19 1 1 A G 14 1_555 A A 17 1_555 7.192 -4.957 0.887 10.675 -1.617 -20.422 21 P_G14:A17_P P 14 ? P 17 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 41 1_555 A G 24 1_555 A C 40 1_555 -1.046 -2.135 3.526 0.346 6.253 43.699 -3.448 1.426 3.198 8.350 -0.462 44.123 1 PP_G2G24:C40C41_PP P 2 ? P 41 ? P 24 ? P 40 ? 1 A G 24 1_555 A C 40 1_555 A G 25 1_555 A C 39 1_555 -1.414 -2.406 2.995 -2.546 7.637 24.941 -7.028 2.548 2.299 17.123 5.709 26.189 2 PP_G24G25:C39C40_PP P 24 ? P 40 ? P 25 ? P 39 ? 1 A G 25 1_555 A C 39 1_555 A G 26 1_555 A C 38 1_555 0.770 -1.212 3.199 -0.060 10.025 29.957 -3.944 -1.426 2.663 18.745 0.113 31.553 3 PP_G25G26:C38C39_PP P 25 ? P 39 ? P 26 ? P 38 ? 1 A G 26 1_555 A C 38 1_555 A G 27 1_555 A C 37 1_555 0.608 -2.017 3.421 1.855 14.818 30.829 -5.584 -0.765 2.273 26.044 -3.261 34.177 4 PP_G26G27:C37C38_PP P 26 ? P 38 ? P 27 ? P 37 ? 1 A G 27 1_555 A C 37 1_555 A C 28 1_555 A C 36 1_555 -0.662 -1.474 3.938 -2.179 11.115 49.236 -2.651 0.597 3.572 13.141 2.576 50.443 5 PP_G27C28:C36C37_PP P 27 ? P 37 ? P 28 ? P 36 ? 1 A C 28 1_555 A C 36 1_555 A U 29 1_555 A A 35 1_555 0.685 -1.336 3.220 0.811 12.660 48.290 -2.453 -0.758 2.818 15.172 -0.972 49.832 6 PP_C28U29:A35C36_PP P 28 ? P 36 ? P 29 ? P 35 ? 1 A U 29 1_555 A A 35 1_555 A C 49 1_555 A G 33 1_555 -4.846 0.010 4.324 9.176 -1.336 110.979 0.027 3.076 4.051 -0.810 -5.562 111.237 7 PP_U29C49:G33A35_PP P 29 ? P 35 ? P 49 ? P 33 ? 1 A C 49 1_555 A G 33 1_555 A U 50 1_555 A A 32 1_555 -1.538 -2.371 3.255 -2.675 9.624 25.790 -7.053 2.641 2.377 20.605 5.727 27.626 8 PP_C49U50:A32G33_PP P 49 ? P 33 ? P 50 ? P 32 ? 1 A U 50 1_555 A A 32 1_555 A C 51 1_555 A G 31 1_555 -0.030 -0.843 2.891 3.468 5.330 38.371 -1.828 0.411 2.741 8.042 -5.233 38.874 9 PP_U50C51:G31A32_PP P 50 ? P 32 ? P 51 ? P 31 ? 1 A A 4 1_555 A C 47 1_555 A A 5 1_555 A C 46 1_555 1.766 -1.827 3.519 -10.695 4.766 45.954 -2.660 -3.061 2.870 5.990 13.444 47.343 10 PP_A4A5:C46C47_PP P 4 ? P 47 ? P 5 ? P 46 ? 1 A A 5 1_555 A C 46 1_555 A G 6 1_555 A C 45 1_555 0.366 -1.269 3.777 -1.947 11.133 52.548 -2.184 -0.541 3.447 12.412 2.170 53.665 11 PP_A5G6:C45C46_PP P 5 ? P 46 ? P 6 ? P 45 ? 1 A G 6 1_555 A C 45 1_555 A G 7 1_555 A C 44 1_555 0.256 -1.788 3.529 2.055 5.545 31.924 -4.208 -0.084 3.191 9.975 -3.697 32.453 12 PP_G6G7:C44C45_PP P 6 ? P 45 ? P 7 ? P 44 ? 1 A G 7 1_555 A C 44 1_555 A U 8 1_555 A A 23 1_555 2.102 -0.444 3.061 0.502 -2.283 46.185 -0.382 -2.636 3.100 -2.909 -0.640 46.240 13 PP_G7U8:A23C44_PP P 7 ? P 44 ? P 8 ? P 23 ? 1 A U 8 1_555 A A 23 1_555 A A 9 1_555 A U 22 1_555 0.420 -1.354 3.243 1.898 13.077 31.596 -4.201 -0.438 2.522 22.809 -3.311 34.182 14 PP_U8A9:U22A23_PP P 8 ? P 23 ? P 9 ? P 22 ? 1 A A 9 1_555 A U 22 1_555 A C 10 1_555 A G 21 1_555 -0.544 -1.230 3.189 -0.022 7.760 34.789 -3.067 0.886 2.858 12.783 0.036 35.617 15 PP_A9C10:G21U22_PP P 9 ? P 22 ? P 10 ? P 21 ? 1 A C 10 1_555 A G 21 1_555 A G 11 1_555 A C 20 1_555 0.719 -1.431 3.429 2.494 8.679 26.861 -4.920 -0.897 2.888 18.047 -5.186 28.311 16 PP_C10G11:C20G21_PP P 10 ? P 21 ? P 11 ? P 20 ? 1 A G 11 1_555 A C 20 1_555 A G 12 1_555 A C 19 1_555 0.273 -1.878 3.471 -0.516 7.727 30.193 -4.957 -0.606 2.907 14.535 0.971 31.148 17 PP_G11G12:C19C20_PP P 11 ? P 20 ? P 12 ? P 19 ? 1 A G 12 1_555 A C 19 1_555 A C 13 1_555 A G 18 1_555 0.602 -1.667 3.214 0.584 3.471 34.788 -3.278 -0.918 3.048 5.788 -0.974 34.960 18 PP_G12C13:G18C19_PP P 12 ? P 19 ? P 13 ? P 18 ? 1 A C 13 1_555 A G 18 1_555 A G 14 1_555 A A 17 1_555 -2.710 -0.928 2.761 -2.187 3.700 48.266 -1.375 3.159 2.800 4.515 2.668 48.445 19 PP_C13G14:A17G18_PP P 13 ? P 18 ? P 14 ? P 17 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R35GM118070 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SODIUM ION' NA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2OIU _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'Structure was experimentally shown to be Xrn1 resistant, supporting the folded stucture.' # _space_group.name_H-M_alt 'P 31 2 1' _space_group.name_Hall ;P 31 2" ; _space_group.IT_number 152 _space_group.crystal_system trigonal _space_group.id 1 #