HEADER LIPID BINDING PROTEIN 08-SEP-20 7K1W TITLE PIKFYVE/FIG4/VAC14 COMPLEX CENTERED ON FIG4 - MAP3 CAVEAT 7K1W ENTRY CONTAINS IMPROPER PEPTIDE LINKAGES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIG4 SAC HOMOLOGY MODEL; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F KEYWDS LIPID KINASE, LIPID PHOSPHATASE, PROTEIN COMPLEX, LIPID BINDING KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.A.LEES,K.M.REINISCH,P.LI REVDAT 4 06-MAR-24 7K1W 1 REMARK REVDAT 3 02-DEC-20 7K1W 1 JRNL REVDAT 2 11-NOV-20 7K1W 1 JRNL REVDAT 1 21-OCT-20 7K1W 0 JRNL AUTH J.A.LEES,P.LI,N.KUMAR,L.S.WEISMAN,K.M.REINISCH JRNL TITL INSIGHTS INTO LYSOSOMAL PI(3,5)P 2 HOMEOSTASIS FROM A JRNL TITL 2 STRUCTURAL-BIOCHEMICAL ANALYSIS OF THE PIKFYVE LIPID KINASE JRNL TITL 3 COMPLEX. JRNL REF MOL.CELL V. 80 736 2020 JRNL REFN ISSN 1097-2765 JRNL PMID 33098764 JRNL DOI 10.1016/J.MOLCEL.2020.10.003 REMARK 2 REMARK 2 RESOLUTION. 5.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 5.100 REMARK 3 NUMBER OF PARTICLES : 19998 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7K1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251702. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PIKFYVE/FIG4/VAC14 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5840.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -22 REMARK 465 HIS F -21 REMARK 465 HIS F -20 REMARK 465 HIS F -19 REMARK 465 HIS F -18 REMARK 465 HIS F -17 REMARK 465 HIS F -16 REMARK 465 HIS F -15 REMARK 465 HIS F -14 REMARK 465 GLY F -13 REMARK 465 SER F -12 REMARK 465 MET F -11 REMARK 465 PRO F -10 REMARK 465 THR F -9 REMARK 465 ALA F -8 REMARK 465 ALA F -7 REMARK 465 ALA F -6 REMARK 465 PRO F -5 REMARK 465 ILE F -4 REMARK 465 ILE F -3 REMARK 465 SER F -2 REMARK 465 SER F -1 REMARK 465 VAL F 0 REMARK 465 VAL F 45 REMARK 465 TYR F 46 REMARK 465 THR F 47 REMARK 465 GLN F 48 REMARK 465 GLN F 49 REMARK 465 GLU F 50 REMARK 465 VAL F 51 REMARK 465 ARG F 52 REMARK 465 GLU F 53 REMARK 465 LEU F 54 REMARK 465 LEU F 55 REMARK 465 GLY F 56 REMARK 465 ARG F 57 REMARK 465 LEU F 58 REMARK 465 ASP F 59 REMARK 465 LEU F 60 REMARK 465 GLY F 61 REMARK 465 ASN F 62 REMARK 465 ARG F 63 REMARK 465 THR F 64 REMARK 465 LYS F 65 REMARK 465 MET F 66 REMARK 465 GLY F 67 REMARK 465 GLN F 68 REMARK 465 LYS F 69 REMARK 465 GLY F 70 REMARK 465 SER F 71 REMARK 465 PRO F 173 REMARK 465 LEU F 174 REMARK 465 GLU F 175 REMARK 465 MET F 176 REMARK 465 LEU F 177 REMARK 465 LYS F 178 REMARK 465 SER F 179 REMARK 465 GLU F 180 REMARK 465 MET F 181 REMARK 465 THR F 182 REMARK 465 GLN F 183 REMARK 465 ASN F 184 REMARK 465 ARG F 185 REMARK 465 GLN F 186 REMARK 465 GLU F 187 REMARK 465 SER F 188 REMARK 465 PHE F 189 REMARK 465 ASP F 190 REMARK 465 ILE F 191 REMARK 465 PHE F 192 REMARK 465 GLU F 193 REMARK 465 ASP F 194 REMARK 465 GLU F 195 REMARK 465 GLY F 196 REMARK 465 LEU F 197 REMARK 465 ILE F 198 REMARK 465 THR F 199 REMARK 465 GLN F 200 REMARK 465 GLY F 201 REMARK 465 GLY F 202 REMARK 465 SER F 203 REMARK 465 GLY F 204 REMARK 465 VAL F 205 REMARK 465 PHE F 206 REMARK 465 TYR F 442 REMARK 465 CYS F 443 REMARK 465 SER F 444 REMARK 465 ILE F 445 REMARK 465 LEU F 446 REMARK 465 ARG F 447 REMARK 465 PRO F 448 REMARK 465 ASP F 449 REMARK 465 GLU F 450 REMARK 465 LYS F 451 REMARK 465 TRP F 452 REMARK 465 ASN F 453 REMARK 465 GLU F 454 REMARK 465 LEU F 455 REMARK 465 LEU F 538 REMARK 465 VAL F 539 REMARK 465 HIS F 540 REMARK 465 ARG F 541 REMARK 465 VAL F 542 REMARK 465 LYS F 543 REMARK 465 THR F 544 REMARK 465 TYR F 545 REMARK 465 ARG F 546 REMARK 465 LYS F 547 REMARK 465 ILE F 548 REMARK 465 ALA F 549 REMARK 465 PRO F 550 REMARK 465 TRP F 551 REMARK 465 THR F 552 REMARK 465 GLN F 553 REMARK 465 HIS F 554 REMARK 465 SER F 555 REMARK 465 LYS F 556 REMARK 465 ASP F 557 REMARK 465 ILE F 558 REMARK 465 MET F 559 REMARK 465 GLN F 560 REMARK 465 THR F 561 REMARK 465 LEU F 562 REMARK 465 SER F 563 REMARK 465 ARG F 564 REMARK 465 TYR F 565 REMARK 465 TYR F 566 REMARK 465 SER F 567 REMARK 465 ASN F 568 REMARK 465 ALA F 569 REMARK 465 PHE F 570 REMARK 465 SER F 571 REMARK 465 ASP F 572 REMARK 465 ALA F 573 REMARK 465 ASP F 574 REMARK 465 ARG F 575 REMARK 465 GLN F 576 REMARK 465 ASP F 577 REMARK 465 SER F 578 REMARK 465 ILE F 579 REMARK 465 ASN F 580 REMARK 465 LEU F 581 REMARK 465 PHE F 582 REMARK 465 LEU F 583 REMARK 465 GLY F 584 REMARK 465 VAL F 585 REMARK 465 PHE F 586 REMARK 465 HIS F 587 REMARK 465 PRO F 588 REMARK 465 THR F 589 REMARK 465 GLU F 590 REMARK 465 GLY F 591 REMARK 465 LYS F 592 REMARK 465 PRO F 593 REMARK 465 HIS F 594 REMARK 465 LEU F 595 REMARK 465 TRP F 596 REMARK 465 GLU F 597 REMARK 465 LEU F 598 REMARK 465 PRO F 599 REMARK 465 THR F 600 REMARK 465 ASP F 601 REMARK 465 PHE F 602 REMARK 465 TYR F 603 REMARK 465 LEU F 604 REMARK 465 HIS F 605 REMARK 465 HIS F 606 REMARK 465 LYS F 607 REMARK 465 ASN F 608 REMARK 465 THR F 609 REMARK 465 MET F 610 REMARK 465 ARG F 611 REMARK 465 LEU F 612 REMARK 465 LEU F 613 REMARK 465 PRO F 614 REMARK 465 THR F 615 REMARK 465 ARG F 616 REMARK 465 ARG F 617 REMARK 465 SER F 618 REMARK 465 TYR F 619 REMARK 465 THR F 620 REMARK 465 TYR F 621 REMARK 465 TRP F 622 REMARK 465 TRP F 623 REMARK 465 THR F 624 REMARK 465 PRO F 625 REMARK 465 GLU F 626 REMARK 465 VAL F 627 REMARK 465 ILE F 628 REMARK 465 LYS F 629 REMARK 465 HIS F 630 REMARK 465 LEU F 631 REMARK 465 PRO F 632 REMARK 465 LEU F 633 REMARK 465 PRO F 634 REMARK 465 TYR F 635 REMARK 465 ASP F 636 REMARK 465 GLU F 637 REMARK 465 VAL F 638 REMARK 465 ILE F 639 REMARK 465 CYS F 640 REMARK 465 ALA F 641 REMARK 465 VAL F 642 REMARK 465 ASN F 643 REMARK 465 LEU F 644 REMARK 465 LYS F 645 REMARK 465 LYS F 646 REMARK 465 LEU F 647 REMARK 465 ILE F 648 REMARK 465 VAL F 649 REMARK 465 LYS F 650 REMARK 465 LYS F 651 REMARK 465 PHE F 652 REMARK 465 HIS F 653 REMARK 465 LYS F 654 REMARK 465 TYR F 655 REMARK 465 GLU F 656 REMARK 465 GLU F 657 REMARK 465 GLU F 658 REMARK 465 ILE F 659 REMARK 465 ASP F 660 REMARK 465 ILE F 661 REMARK 465 HIS F 662 REMARK 465 ASN F 663 REMARK 465 GLU F 664 REMARK 465 PHE F 665 REMARK 465 PHE F 666 REMARK 465 ARG F 667 REMARK 465 PRO F 668 REMARK 465 TYR F 669 REMARK 465 GLU F 670 REMARK 465 LEU F 671 REMARK 465 SER F 672 REMARK 465 SER F 673 REMARK 465 PHE F 674 REMARK 465 ASP F 675 REMARK 465 ASP F 676 REMARK 465 THR F 677 REMARK 465 PHE F 678 REMARK 465 CYS F 679 REMARK 465 LEU F 680 REMARK 465 ALA F 681 REMARK 465 MET F 682 REMARK 465 THR F 683 REMARK 465 SER F 684 REMARK 465 SER F 685 REMARK 465 ALA F 686 REMARK 465 ARG F 687 REMARK 465 ASP F 688 REMARK 465 PHE F 689 REMARK 465 MET F 690 REMARK 465 PRO F 691 REMARK 465 LYS F 692 REMARK 465 THR F 693 REMARK 465 VAL F 694 REMARK 465 GLY F 695 REMARK 465 ILE F 696 REMARK 465 ASP F 697 REMARK 465 PRO F 698 REMARK 465 SER F 699 REMARK 465 PRO F 700 REMARK 465 PHE F 701 REMARK 465 THR F 702 REMARK 465 VAL F 703 REMARK 465 ARG F 704 REMARK 465 LYS F 705 REMARK 465 PRO F 706 REMARK 465 ASP F 707 REMARK 465 GLU F 708 REMARK 465 THR F 709 REMARK 465 GLY F 710 REMARK 465 LYS F 711 REMARK 465 SER F 712 REMARK 465 VAL F 713 REMARK 465 LEU F 714 REMARK 465 GLY F 715 REMARK 465 ASN F 716 REMARK 465 LYS F 717 REMARK 465 SER F 718 REMARK 465 ASN F 719 REMARK 465 ARG F 720 REMARK 465 GLU F 721 REMARK 465 GLU F 722 REMARK 465 ALA F 723 REMARK 465 VAL F 724 REMARK 465 LEU F 725 REMARK 465 GLN F 726 REMARK 465 ARG F 727 REMARK 465 LYS F 728 REMARK 465 THR F 729 REMARK 465 ALA F 730 REMARK 465 ALA F 731 REMARK 465 SER F 732 REMARK 465 ALA F 733 REMARK 465 PRO F 734 REMARK 465 PRO F 735 REMARK 465 PRO F 736 REMARK 465 PRO F 737 REMARK 465 SER F 738 REMARK 465 GLU F 739 REMARK 465 GLU F 740 REMARK 465 ALA F 741 REMARK 465 VAL F 742 REMARK 465 SER F 743 REMARK 465 SER F 744 REMARK 465 SER F 745 REMARK 465 SER F 746 REMARK 465 GLU F 747 REMARK 465 ASP F 748 REMARK 465 ASP F 749 REMARK 465 SER F 750 REMARK 465 GLY F 751 REMARK 465 THR F 752 REMARK 465 ASP F 753 REMARK 465 ARG F 754 REMARK 465 GLU F 755 REMARK 465 GLU F 756 REMARK 465 GLU F 757 REMARK 465 GLY F 758 REMARK 465 SER F 759 REMARK 465 VAL F 760 REMARK 465 SER F 761 REMARK 465 GLN F 762 REMARK 465 ARG F 763 REMARK 465 SER F 764 REMARK 465 THR F 765 REMARK 465 PRO F 766 REMARK 465 VAL F 767 REMARK 465 LYS F 768 REMARK 465 MET F 769 REMARK 465 THR F 770 REMARK 465 ASP F 771 REMARK 465 ALA F 772 REMARK 465 GLY F 773 REMARK 465 ASP F 774 REMARK 465 SER F 775 REMARK 465 ALA F 776 REMARK 465 LYS F 777 REMARK 465 VAL F 778 REMARK 465 THR F 779 REMARK 465 GLU F 780 REMARK 465 ASN F 781 REMARK 465 VAL F 782 REMARK 465 VAL F 783 REMARK 465 GLN F 784 REMARK 465 PRO F 785 REMARK 465 MET F 786 REMARK 465 LYS F 787 REMARK 465 GLU F 788 REMARK 465 LEU F 789 REMARK 465 TYR F 790 REMARK 465 GLY F 791 REMARK 465 ILE F 792 REMARK 465 ASN F 793 REMARK 465 LEU F 794 REMARK 465 SER F 795 REMARK 465 ASP F 796 REMARK 465 GLY F 797 REMARK 465 LEU F 798 REMARK 465 SER F 799 REMARK 465 GLU F 800 REMARK 465 GLU F 801 REMARK 465 ASP F 802 REMARK 465 PHE F 803 REMARK 465 SER F 804 REMARK 465 ILE F 805 REMARK 465 TYR F 806 REMARK 465 SER F 807 REMARK 465 ARG F 808 REMARK 465 PHE F 809 REMARK 465 VAL F 810 REMARK 465 GLN F 811 REMARK 465 LEU F 812 REMARK 465 GLY F 813 REMARK 465 GLN F 814 REMARK 465 SER F 815 REMARK 465 GLN F 816 REMARK 465 HIS F 817 REMARK 465 LYS F 818 REMARK 465 GLN F 819 REMARK 465 ASP F 820 REMARK 465 LYS F 821 REMARK 465 ASN F 822 REMARK 465 SER F 823 REMARK 465 GLN F 824 REMARK 465 GLN F 825 REMARK 465 PRO F 826 REMARK 465 CYS F 827 REMARK 465 SER F 828 REMARK 465 ARG F 829 REMARK 465 CYS F 830 REMARK 465 SER F 831 REMARK 465 ASP F 832 REMARK 465 GLY F 833 REMARK 465 VAL F 834 REMARK 465 ILE F 835 REMARK 465 LYS F 836 REMARK 465 LEU F 837 REMARK 465 THR F 838 REMARK 465 PRO F 839 REMARK 465 ILE F 840 REMARK 465 SER F 841 REMARK 465 ALA F 842 REMARK 465 PHE F 843 REMARK 465 SER F 844 REMARK 465 GLN F 845 REMARK 465 ASP F 846 REMARK 465 ASN F 847 REMARK 465 ILE F 848 REMARK 465 TYR F 849 REMARK 465 GLU F 850 REMARK 465 VAL F 851 REMARK 465 GLN F 852 REMARK 465 PRO F 853 REMARK 465 PRO F 854 REMARK 465 ARG F 855 REMARK 465 VAL F 856 REMARK 465 ASP F 857 REMARK 465 ARG F 858 REMARK 465 LYS F 859 REMARK 465 SER F 860 REMARK 465 THR F 861 REMARK 465 GLU F 862 REMARK 465 ILE F 863 REMARK 465 PHE F 864 REMARK 465 GLN F 865 REMARK 465 ALA F 866 REMARK 465 HIS F 867 REMARK 465 ILE F 868 REMARK 465 GLN F 869 REMARK 465 ALA F 870 REMARK 465 SER F 871 REMARK 465 GLN F 872 REMARK 465 GLY F 873 REMARK 465 ILE F 874 REMARK 465 MET F 875 REMARK 465 GLN F 876 REMARK 465 PRO F 877 REMARK 465 LEU F 878 REMARK 465 GLY F 879 REMARK 465 LYS F 880 REMARK 465 GLU F 881 REMARK 465 ASP F 882 REMARK 465 SER F 883 REMARK 465 SER F 884 REMARK 465 MET F 885 REMARK 465 TYR F 886 REMARK 465 ARG F 887 REMARK 465 GLU F 888 REMARK 465 TYR F 889 REMARK 465 ILE F 890 REMARK 465 ARG F 891 REMARK 465 ASN F 892 REMARK 465 ARG F 893 REMARK 465 TYR F 894 REMARK 465 LEU F 895 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB PHE F 151 CG1 ILE F 238 1.34 REMARK 500 CB PHE F 151 CD1 ILE F 238 1.35 REMARK 500 OE1 GLN F 164 O GLN F 466 1.44 REMARK 500 OH TYR F 165 CB ARG F 355 1.45 REMARK 500 C PHE F 151 CG1 ILE F 238 1.45 REMARK 500 CA PHE F 151 CG1 ILE F 238 1.49 REMARK 500 CB PHE F 151 CB ILE F 238 1.89 REMARK 500 CA PHE F 151 CD1 ILE F 238 1.91 REMARK 500 N TYR F 152 CG1 ILE F 238 1.97 REMARK 500 O ASN F 150 O ILE F 239 1.98 REMARK 500 CD1 ILE F 107 CE1 TYR F 306 2.02 REMARK 500 OH TYR F 165 CA ARG F 355 2.05 REMARK 500 CB PHE F 151 CG2 ILE F 238 2.07 REMARK 500 OE1 GLN F 164 C GLN F 466 2.17 REMARK 500 CD1 PHE F 151 CG2 ILE F 238 2.19 REMARK 500 C PHE F 151 CD1 ILE F 238 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO F 124 N - CA - C ANGL. DEV. = 15.9 DEGREES REMARK 500 GLN F 143 OE1 - CD - NE2 ANGL. DEV. = 15.9 DEGREES REMARK 500 GLN F 143 CG - CD - OE1 ANGL. DEV. = -77.2 DEGREES REMARK 500 GLN F 143 CG - CD - NE2 ANGL. DEV. = -23.3 DEGREES REMARK 500 PRO F 332 C - N - CD ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG F 11 -141.41 148.54 REMARK 500 GLU F 21 159.69 83.74 REMARK 500 THR F 32 -174.60 -56.87 REMARK 500 LYS F 35 54.29 -107.26 REMARK 500 ASP F 42 41.58 -78.28 REMARK 500 PHE F 75 169.45 146.87 REMARK 500 LEU F 90 -133.81 56.80 REMARK 500 ASN F 125 77.16 47.88 REMARK 500 LEU F 170 -68.15 99.99 REMARK 500 ARG F 171 27.80 -70.30 REMARK 500 MET F 172 -3.17 65.65 REMARK 500 ILE F 208 -149.65 -131.05 REMARK 500 VAL F 217 99.55 -61.29 REMARK 500 ASN F 219 39.68 -95.36 REMARK 500 VAL F 230 82.17 80.87 REMARK 500 PHE F 242 142.79 -170.72 REMARK 500 LEU F 273 130.59 -177.33 REMARK 500 ALA F 284 -40.30 81.90 REMARK 500 SER F 300 -173.85 74.40 REMARK 500 PRO F 317 76.64 -66.68 REMARK 500 SER F 321 108.17 -56.31 REMARK 500 MET F 328 -169.87 -79.83 REMARK 500 ILE F 333 124.12 55.90 REMARK 500 ASP F 336 81.05 -178.18 REMARK 500 ALA F 338 -158.51 -82.75 REMARK 500 SER F 358 147.72 -38.05 REMARK 500 PRO F 359 146.30 -30.78 REMARK 500 LEU F 393 -91.09 175.84 REMARK 500 GLU F 396 154.47 97.64 REMARK 500 THR F 398 -48.99 123.74 REMARK 500 LYS F 411 76.12 -106.00 REMARK 500 SER F 412 -89.82 162.89 REMARK 500 ASP F 504 -161.66 -78.84 REMARK 500 SER F 530 3.04 -63.95 REMARK 500 SER F 536 -147.49 -157.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS F 266 PHE F 267 -117.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-22631 RELATED DB: EMDB REMARK 900 PIKFYVE/FIG4/VAC14 COMPLEX CENTERED ON FIG4 - MAP3 REMARK 900 RELATED ID: EMD-22634 RELATED DB: EMDB REMARK 900 PIKFYVE/FIG4/VAC14 COMPLEX CENTERED ON VAC14 - MAP1 REMARK 900 RELATED ID: EMD-22647 RELATED DB: EMDB REMARK 900 PIKFYVE/FIG4/VAC14 COMPLEX CENTERED ON PIKFYVE - MAP2 DBREF 7K1W F -22 895 PDB 7K1W 7K1W -22 895 SEQRES 1 F 918 MET HIS HIS HIS HIS HIS HIS HIS HIS GLY SER MET PRO SEQRES 2 F 918 THR ALA ALA ALA PRO ILE ILE SER SER VAL GLN LYS LEU SEQRES 3 F 918 VAL LEU TYR GLU THR ARG ALA ARG TYR PHE LEU VAL GLY SEQRES 4 F 918 SER ASN ASN ALA GLU THR LYS TYR ARG VAL LEU LYS ILE SEQRES 5 F 918 ASP ARG THR GLU PRO LYS ASP LEU VAL ILE ILE ASP ASP SEQRES 6 F 918 ARG HIS VAL TYR THR GLN GLN GLU VAL ARG GLU LEU LEU SEQRES 7 F 918 GLY ARG LEU ASP LEU GLY ASN ARG THR LYS MET GLY GLN SEQRES 8 F 918 LYS GLY SER SER GLY LEU PHE ARG ALA VAL SER ALA PHE SEQRES 9 F 918 GLY VAL VAL GLY PHE VAL ARG PHE LEU GLU GLY TYR TYR SEQRES 10 F 918 ILE VAL LEU ILE THR LYS ARG ARG LYS MET ALA ASP ILE SEQRES 11 F 918 GLY GLY HIS ALA ILE TYR LYS VAL GLU ASP THR ASN MET SEQRES 12 F 918 ILE TYR ILE PRO ASN ASP SER VAL ARG VAL THR HIS PRO SEQRES 13 F 918 ASP GLU ALA ARG TYR LEU ARG ILE PHE GLN ASN VAL ASP SEQRES 14 F 918 LEU SER SER ASN PHE TYR PHE SER TYR SER TYR ASP LEU SEQRES 15 F 918 SER HIS SER LEU GLN TYR ASN LEU THR VAL LEU ARG MET SEQRES 16 F 918 PRO LEU GLU MET LEU LYS SER GLU MET THR GLN ASN ARG SEQRES 17 F 918 GLN GLU SER PHE ASP ILE PHE GLU ASP GLU GLY LEU ILE SEQRES 18 F 918 THR GLN GLY GLY SER GLY VAL PHE GLY ILE CYS SER GLU SEQRES 19 F 918 PRO TYR MET LYS TYR VAL TRP ASN GLY GLU LEU LEU ASP SEQRES 20 F 918 ILE ILE LYS SER THR VAL HIS ARG ASP TRP LEU LEU TYR SEQRES 21 F 918 ILE ILE HIS GLY PHE CYS GLY GLN SER LYS LEU LEU ILE SEQRES 22 F 918 TYR GLY ARG PRO VAL TYR VAL THR LEU ILE ALA ARG ARG SEQRES 23 F 918 SER SER LYS PHE ALA GLY THR ARG PHE LEU LYS ARG GLY SEQRES 24 F 918 ALA ASN CYS GLU GLY ASP VAL ALA ASN GLU VAL GLU THR SEQRES 25 F 918 GLU GLN ILE LEU CYS ASP ALA SER VAL MET SER PHE THR SEQRES 26 F 918 ALA GLY SER TYR SER SER TYR VAL GLN VAL ARG GLY SER SEQRES 27 F 918 VAL PRO LEU TYR TRP SER GLN ASP ILE SER THR MET MET SEQRES 28 F 918 PRO LYS PRO PRO ILE THR LEU ASP GLN ALA ASP PRO PHE SEQRES 29 F 918 ALA HIS VAL ALA ALA LEU HIS PHE ASP GLN MET PHE GLN SEQRES 30 F 918 ARG PHE GLY SER PRO ILE ILE ILE LEU ASN LEU VAL LYS SEQRES 31 F 918 GLU ARG GLU LYS ARG LYS HIS GLU ARG ILE LEU SER GLU SEQRES 32 F 918 GLU LEU VAL ALA ALA VAL THR TYR LEU ASN GLN PHE LEU SEQRES 33 F 918 PRO PRO GLU HIS THR ILE VAL TYR ILE PRO TRP ASP MET SEQRES 34 F 918 ALA LYS TYR THR LYS SER LYS LEU CYS ASN VAL LEU ASP SEQRES 35 F 918 ARG LEU ASN VAL ILE ALA GLU SER VAL VAL LYS LYS THR SEQRES 36 F 918 GLY PHE PHE VAL ASN ARG PRO ASP SER TYR CYS SER ILE SEQRES 37 F 918 LEU ARG PRO ASP GLU LYS TRP ASN GLU LEU GLY GLY CYS SEQRES 38 F 918 VAL ILE PRO THR GLY ARG LEU GLN THR GLY ILE LEU ARG SEQRES 39 F 918 THR ASN CYS VAL ASP CYS LEU ASP ARG THR ASN THR ALA SEQRES 40 F 918 GLN PHE MET VAL GLY LYS CYS ALA LEU ALA TYR GLN LEU SEQRES 41 F 918 TYR SER LEU GLY LEU ILE ASP LYS PRO ASN LEU GLN PHE SEQRES 42 F 918 ASP THR ASP ALA VAL ARG LEU PHE GLU GLU LEU TYR GLU SEQRES 43 F 918 ASP HIS GLY ASP THR LEU SER LEU GLN TYR GLY GLY SER SEQRES 44 F 918 GLN LEU VAL HIS ARG VAL LYS THR TYR ARG LYS ILE ALA SEQRES 45 F 918 PRO TRP THR GLN HIS SER LYS ASP ILE MET GLN THR LEU SEQRES 46 F 918 SER ARG TYR TYR SER ASN ALA PHE SER ASP ALA ASP ARG SEQRES 47 F 918 GLN ASP SER ILE ASN LEU PHE LEU GLY VAL PHE HIS PRO SEQRES 48 F 918 THR GLU GLY LYS PRO HIS LEU TRP GLU LEU PRO THR ASP SEQRES 49 F 918 PHE TYR LEU HIS HIS LYS ASN THR MET ARG LEU LEU PRO SEQRES 50 F 918 THR ARG ARG SER TYR THR TYR TRP TRP THR PRO GLU VAL SEQRES 51 F 918 ILE LYS HIS LEU PRO LEU PRO TYR ASP GLU VAL ILE CYS SEQRES 52 F 918 ALA VAL ASN LEU LYS LYS LEU ILE VAL LYS LYS PHE HIS SEQRES 53 F 918 LYS TYR GLU GLU GLU ILE ASP ILE HIS ASN GLU PHE PHE SEQRES 54 F 918 ARG PRO TYR GLU LEU SER SER PHE ASP ASP THR PHE CYS SEQRES 55 F 918 LEU ALA MET THR SER SER ALA ARG ASP PHE MET PRO LYS SEQRES 56 F 918 THR VAL GLY ILE ASP PRO SER PRO PHE THR VAL ARG LYS SEQRES 57 F 918 PRO ASP GLU THR GLY LYS SER VAL LEU GLY ASN LYS SER SEQRES 58 F 918 ASN ARG GLU GLU ALA VAL LEU GLN ARG LYS THR ALA ALA SEQRES 59 F 918 SER ALA PRO PRO PRO PRO SER GLU GLU ALA VAL SER SER SEQRES 60 F 918 SER SER GLU ASP ASP SER GLY THR ASP ARG GLU GLU GLU SEQRES 61 F 918 GLY SER VAL SER GLN ARG SER THR PRO VAL LYS MET THR SEQRES 62 F 918 ASP ALA GLY ASP SER ALA LYS VAL THR GLU ASN VAL VAL SEQRES 63 F 918 GLN PRO MET LYS GLU LEU TYR GLY ILE ASN LEU SER ASP SEQRES 64 F 918 GLY LEU SER GLU GLU ASP PHE SER ILE TYR SER ARG PHE SEQRES 65 F 918 VAL GLN LEU GLY GLN SER GLN HIS LYS GLN ASP LYS ASN SEQRES 66 F 918 SER GLN GLN PRO CYS SER ARG CYS SER ASP GLY VAL ILE SEQRES 67 F 918 LYS LEU THR PRO ILE SER ALA PHE SER GLN ASP ASN ILE SEQRES 68 F 918 TYR GLU VAL GLN PRO PRO ARG VAL ASP ARG LYS SER THR SEQRES 69 F 918 GLU ILE PHE GLN ALA HIS ILE GLN ALA SER GLN GLY ILE SEQRES 70 F 918 MET GLN PRO LEU GLY LYS GLU ASP SER SER MET TYR ARG SEQRES 71 F 918 GLU TYR ILE ARG ASN ARG TYR LEU HELIX 1 AA1 HIS F 132 SER F 149 1 18 HELIX 2 AA2 SER F 162 LEU F 170 1 9 HELIX 3 AA3 LEU F 223 VAL F 230 1 8 HELIX 4 AA4 HIS F 231 LEU F 235 5 5 HELIX 5 AA5 ASP F 339 GLY F 357 1 19 HELIX 6 AA6 ARG F 376 ASN F 390 1 15 HELIX 7 AA7 SER F 412 VAL F 429 1 18 HELIX 8 AA8 CYS F 477 GLY F 501 1 25 HELIX 9 AA9 ASN F 507 PHE F 510 5 4 HELIX 10 AB1 ASP F 511 SER F 530 1 20 HELIX 11 AB2 LEU F 531 TYR F 533 5 3 SHEET 1 AA1 5 LEU F 37 ILE F 40 0 SHEET 2 AA1 5 VAL F 26 ASP F 30 -1 N VAL F 26 O ILE F 40 SHEET 3 AA1 5 ARG F 11 GLY F 16 -1 N LEU F 14 O LEU F 27 SHEET 4 AA1 5 LEU F 3 GLU F 7 -1 N VAL F 4 O VAL F 15 SHEET 5 AA1 5 VAL F 78 ALA F 80 -1 O VAL F 78 N LEU F 5 SHEET 1 AA2 4 GLY F 82 PHE F 89 0 SHEET 2 AA2 4 GLY F 92 ILE F 107 -1 O VAL F 96 N GLY F 85 SHEET 3 AA2 4 HIS F 110 TYR F 122 -1 O ILE F 112 N ALA F 105 SHEET 4 AA2 4 TYR F 152 PHE F 153 -1 O PHE F 153 N TYR F 113 SHEET 1 AA3 7 PHE F 242 ILE F 250 0 SHEET 2 AA3 7 ARG F 253 ARG F 263 -1 O VAL F 255 N LEU F 248 SHEET 3 AA3 7 GLU F 286 ALA F 296 -1 O GLU F 290 N ILE F 260 SHEET 4 AA3 7 GLY F 304 GLY F 314 -1 O SER F 305 N ASP F 295 SHEET 5 AA3 7 ILE F 469 ASN F 473 1 O THR F 472 N VAL F 312 SHEET 6 AA3 7 ILE F 360 LEU F 365 1 N LEU F 363 O ARG F 471 SHEET 7 AA3 7 ILE F 399 TRP F 404 1 O VAL F 400 N ILE F 362 SHEET 1 AA4 6 PHE F 242 ILE F 250 0 SHEET 2 AA4 6 ARG F 253 ARG F 263 -1 O VAL F 255 N LEU F 248 SHEET 3 AA4 6 GLU F 286 ALA F 296 -1 O GLU F 290 N ILE F 260 SHEET 4 AA4 6 GLY F 304 GLY F 314 -1 O SER F 305 N ASP F 295 SHEET 5 AA4 6 PHE F 435 PRO F 439 -1 O ASN F 437 N TYR F 306 SHEET 6 AA4 6 VAL F 459 ARG F 464 -1 O ARG F 464 N VAL F 436 CISPEP 1 GLY F 207 ILE F 208 0 1.07 CISPEP 2 LYS F 408 TYR F 409 0 2.57 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000