HEADER ONCOPROTEIN 13-SEP-20 7K3S TITLE SOLUTION NMR STRUCTURE OF THE COILED-COIL BRCA1-PALB2 HETERODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1337-1387; COMPND 5 SYNONYM: RING-TYPE E3 UBIQUITIN TRANSFERASE BRCA1; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PARTNER AND LOCALIZER OF BRCA2; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 1-60; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: BL21; SOURCE 6 GENE: BRCA1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MMR494A-1337-1387; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: PALB2; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: MMR495A-1-60 KEYWDS HOMOLOGOUS RECOMBINATION, DNA, ONCOPROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR N.S.DAIGHAM,G.LIU,S.F.BUNTING,G.T.MONTELIONE REVDAT 3 15-MAY-24 7K3S 1 REMARK REVDAT 2 14-JUN-23 7K3S 1 REMARK REVDAT 1 29-SEP-21 7K3S 0 JRNL AUTH N.S.DAIGHAM,G.LIU,S.F.BUNTING,G.T.MONTELIONE JRNL TITL THE STRUCTURAL BASIS FOR INTERACTIONS BETWEEN PALB2 AND JRNL TITL 2 BRCA1 THAT MEDIATE THE HOMOLOGOUS RECOMBINATION DNA DAMAGE JRNL TITL 3 REPAIR PROCESS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.SONG,M.LI,G.LIU,G.V.T.SWAPNA,N.S.DAIGHAM,B.XIA, REMARK 1 AUTH 2 G.T.MONTELIONE,S.F.BUNTING REMARK 1 TITL ANTIPARALLEL COILED-COIL INTERACTIONS MEDIATE THE REMARK 1 TITL 2 HOMODIMERIZATION OF THE DNA DAMAGE-REPAIR PROTEIN PALB2. REMARK 1 REF BIOCHEMISTRY V. 57 6581 2018 REMARK 1 REFN ISSN 1520-4995 REMARK 1 PMID 30289697 REMARK 1 DOI 10.1021/ACS.BIOCHEM.8B00789 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLECULAR DYNAMICS REMARK 4 REMARK 4 7K3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251112. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PALB2CC, 3 MM BRCA1CC, 20 MM MES, REMARK 210 200 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 5 MM CACL2, 90% H2O/10% D2O; REMARK 210 1.5 MM [U-100% 13C; U-100% 15N] REMARK 210 BRCA1CC, 3 MM PALB2CC, 20 MM MES, REMARK 210 200 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 5 MM CACL2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC NH2 ONLY; 2D 1H REMARK 210 -13C HSQC ALIPHATIC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D 1H-15N REMARK 210 TOCSY; 3D HNCO; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, SPARKY, REMARK 210 TOPSPIN, AUTOASSIGN, CYANA, AVS, REMARK 210 TALOS, PSVS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6 CYS A 7 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 -81.07 63.18 REMARK 500 1 CYS A 7 -73.79 175.02 REMARK 500 1 SER A 8 37.59 170.23 REMARK 500 1 ILE A 12 -55.80 -135.85 REMARK 500 1 SER A 47 -61.45 -105.17 REMARK 500 1 SER A 52 -30.81 177.09 REMARK 500 1 HIS A 55 40.57 -86.19 REMARK 500 1 HIS A 58 -42.05 -154.66 REMARK 500 1 LYS B 145 98.33 -63.79 REMARK 500 1 LYS B 149 -77.22 -108.49 REMARK 500 1 PRO B 158 85.65 -15.89 REMARK 500 1 LEU B 161 39.48 -148.26 REMARK 500 2 ASP A 6 83.89 67.07 REMARK 500 2 CYS A 7 54.57 -172.16 REMARK 500 2 ILE A 12 -51.13 -131.39 REMARK 500 2 ARG A 42 -71.58 -126.56 REMARK 500 2 SER A 50 86.38 -166.73 REMARK 500 2 PRO A 51 84.15 -66.09 REMARK 500 2 SER A 52 47.94 -89.82 REMARK 500 2 HIS A 57 94.31 -64.45 REMARK 500 2 HIS A 59 105.20 -161.13 REMARK 500 2 ASN B 146 84.40 -59.73 REMARK 500 2 SER B 147 96.85 42.67 REMARK 500 2 ALA B 150 81.97 -153.45 REMARK 500 2 PRO B 158 96.75 -56.64 REMARK 500 2 LEU B 161 92.04 -67.95 REMARK 500 2 HIS B 167 130.73 -174.46 REMARK 500 3 GLU A 5 -64.29 -168.88 REMARK 500 3 ASP A 6 134.06 177.27 REMARK 500 3 SER A 8 102.31 66.37 REMARK 500 3 SER A 10 -67.29 -109.72 REMARK 500 3 ILE A 12 -64.30 -122.46 REMARK 500 3 ARG A 42 -55.65 -131.21 REMARK 500 3 SER A 52 43.98 -142.40 REMARK 500 3 PRO B 108 77.76 -67.26 REMARK 500 3 ASN B 146 125.94 -170.68 REMARK 500 3 SER B 147 30.31 -84.90 REMARK 500 3 LYS B 148 94.09 69.37 REMARK 500 3 LYS B 149 -59.58 -158.13 REMARK 500 3 ALA B 150 56.39 -153.52 REMARK 500 3 GLN B 157 109.43 -45.40 REMARK 500 4 CYS A 7 -67.00 -162.60 REMARK 500 4 SER A 10 -79.90 -154.26 REMARK 500 4 ILE A 12 -68.56 -126.67 REMARK 500 4 ASN A 44 -52.11 178.66 REMARK 500 4 PRO A 46 92.51 -69.55 REMARK 500 4 HIS A 55 14.96 -148.16 REMARK 500 4 HIS A 56 100.00 -65.88 REMARK 500 4 GLU B 103 86.70 -64.87 REMARK 500 4 LEU B 109 109.02 -56.93 REMARK 500 REMARK 500 THIS ENTRY HAS 201 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6E4H RELATED DB: PDB REMARK 900 6E4H CONTAINS THE HOMODIMER FORM OF PALB2CC REMARK 900 RELATED ID: 30493 RELATED DB: BMRB REMARK 900 30493 CONTAINS NMR DATA FOR PALB2CC HOMODIMER REMARK 900 RELATED ID: 30796 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF THE COILED-COIL BRCA1-PALB2 HETERODIMER DBREF 7K3S A 2 53 UNP P48754 BRCA1_MOUSE 1337 1388 DBREF 7K3S B 101 160 UNP Q3U0P1 PALB2_MOUSE 1 60 SEQADV 7K3S MET A 1 UNP P48754 INITIATING METHIONINE SEQADV 7K3S GLU A 54 UNP P48754 EXPRESSION TAG SEQADV 7K3S HIS A 55 UNP P48754 EXPRESSION TAG SEQADV 7K3S HIS A 56 UNP P48754 EXPRESSION TAG SEQADV 7K3S HIS A 57 UNP P48754 EXPRESSION TAG SEQADV 7K3S HIS A 58 UNP P48754 EXPRESSION TAG SEQADV 7K3S HIS A 59 UNP P48754 EXPRESSION TAG SEQADV 7K3S HIS A 60 UNP P48754 EXPRESSION TAG SEQADV 7K3S LEU B 161 UNP Q3U0P1 EXPRESSION TAG SEQADV 7K3S GLU B 162 UNP Q3U0P1 EXPRESSION TAG SEQADV 7K3S HIS B 163 UNP Q3U0P1 EXPRESSION TAG SEQADV 7K3S HIS B 164 UNP Q3U0P1 EXPRESSION TAG SEQADV 7K3S HIS B 165 UNP Q3U0P1 EXPRESSION TAG SEQADV 7K3S HIS B 166 UNP Q3U0P1 EXPRESSION TAG SEQADV 7K3S HIS B 167 UNP Q3U0P1 EXPRESSION TAG SEQADV 7K3S HIS B 168 UNP Q3U0P1 EXPRESSION TAG SEQRES 1 A 60 MET ASN LEU SER GLU ASP CYS SER GLN SER ASP ILE LEU SEQRES 2 A 60 THR THR GLN GLN ARG ALA THR MET LYS TYR ASN LEU ILE SEQRES 3 A 60 LYS LEU GLN GLN GLU MET ALA HIS LEU GLU ALA VAL LEU SEQRES 4 A 60 GLU GLN ARG GLY ASN GLN PRO SER GLY HIS SER PRO SER SEQRES 5 A 60 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 68 MET GLU GLU LEU SER GLY LYS PRO LEU SER TYR ALA GLU SEQRES 2 B 68 LYS GLU LYS LEU LYS GLU LYS LEU ALA PHE LEU LYS LYS SEQRES 3 B 68 GLU TYR SER ARG THR LEU ALA ARG LEU GLN ARG ALA LYS SEQRES 4 B 68 ARG ALA GLU LYS ALA LYS ASN SER LYS LYS ALA ILE GLU SEQRES 5 B 68 ASP GLY VAL PRO GLN PRO GLU ALA LEU GLU HIS HIS HIS SEQRES 6 B 68 HIS HIS HIS HELIX 1 AA1 THR A 14 GLY A 43 1 30 HELIX 2 AA2 SER B 110 ALA B 144 1 35 CISPEP 1 ASP A 6 CYS A 7 1 -12.72 CISPEP 2 ASP A 6 CYS A 7 2 -11.59 CISPEP 3 ASP A 6 CYS A 7 3 -10.25 CISPEP 4 ASP A 6 CYS A 7 4 -9.83 CISPEP 5 ASP A 6 CYS A 7 5 -10.60 CISPEP 6 ASP A 6 CYS A 7 6 -22.32 CISPEP 7 ASP A 6 CYS A 7 7 -4.97 CISPEP 8 ASP A 6 CYS A 7 8 -17.45 CISPEP 9 ASP A 6 CYS A 7 9 10.00 CISPEP 10 ASP A 6 CYS A 7 10 -4.71 CISPEP 11 ASP A 6 CYS A 7 11 -13.43 CISPEP 12 ASP A 6 CYS A 7 12 -13.94 CISPEP 13 ASP A 6 CYS A 7 13 -6.80 CISPEP 14 ASP A 6 CYS A 7 14 7.76 CISPEP 15 ASP A 6 CYS A 7 15 7.93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1