HEADER HYDROLASE 16-SEP-20 7K4Q TITLE CRYSTAL STRUCTURE OF KEMP ELIMINASE HG3 IN COMPLEX WITH THE TRANSITION TITLE 2 STATE ANALOG 6-NITROBENZOTRIAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: XYLANASE,1,4-BETA-D-XYLAN XYLANOHYDROLASE,TAXI; COMPND 5 EC: 3.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOASCUS AURANTIACUS; SOURCE 3 ORGANISM_TAXID: 5087; SOURCE 4 GENE: XYNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KEMP ELIMINATION, DIRECTED EVOLUTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.P.PADUA,R.OTTEN,A.BUNZEL,V.NGUYEN,W.PITSAWONG,M.PATTERSON,S.SUI, AUTHOR 2 S.L.PERRY,A.E.COHEN,D.HILVERT,D.KERN REVDAT 3 18-OCT-23 7K4Q 1 REMARK REVDAT 2 30-DEC-20 7K4Q 1 JRNL REVDAT 1 02-DEC-20 7K4Q 0 JRNL AUTH R.OTTEN,R.A.P.PADUA,H.A.BUNZEL,V.NGUYEN,W.PITSAWONG, JRNL AUTH 2 M.PATTERSON,S.SUI,S.L.PERRY,A.E.COHEN,D.HILVERT,D.KERN JRNL TITL HOW DIRECTED EVOLUTION RESHAPES THE ENERGY LANDSCAPE IN AN JRNL TITL 2 ENZYME TO BOOST CATALYSIS. JRNL REF SCIENCE V. 370 1442 2020 JRNL REFN ESSN 1095-9203 JRNL PMID 33214289 JRNL DOI 10.1126/SCIENCE.ABD3623 REMARK 2 REMARK 2 RESOLUTION. 1.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 125995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.590 REMARK 3 FREE R VALUE TEST SET COUNT : 3930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5900 - 3.8800 0.99 8966 139 0.1500 0.1563 REMARK 3 2 3.8800 - 3.0800 0.93 8485 131 0.1432 0.1533 REMARK 3 3 3.0800 - 2.6900 0.95 8624 140 0.1514 0.2330 REMARK 3 4 2.6900 - 2.4400 0.99 8965 136 0.1462 0.1645 REMARK 3 5 2.4400 - 2.2700 0.99 8944 147 0.1438 0.1679 REMARK 3 6 2.2700 - 2.1300 0.99 8986 143 0.1511 0.1676 REMARK 3 7 2.1300 - 2.0300 1.00 9015 145 0.1491 0.1804 REMARK 3 8 2.0300 - 1.9400 1.00 9008 149 0.1556 0.1825 REMARK 3 9 1.9400 - 1.8600 0.92 8369 133 0.1716 0.2311 REMARK 3 10 1.8600 - 1.8000 0.92 8288 131 0.1641 0.1919 REMARK 3 11 1.8000 - 1.7400 0.95 8606 136 0.1584 0.1582 REMARK 3 12 1.7400 - 1.6900 0.96 8672 146 0.1680 0.1744 REMARK 3 13 1.6900 - 1.6500 0.96 8714 144 0.1701 0.2045 REMARK 3 14 1.6500 - 1.6100 0.97 8757 142 0.1697 0.1850 REMARK 3 15 1.6100 - 1.5700 0.97 8836 136 0.1789 0.2085 REMARK 3 16 1.5700 - 1.5400 0.97 8742 149 0.1833 0.1768 REMARK 3 17 1.5400 - 1.5100 0.98 8873 147 0.1871 0.1936 REMARK 3 18 1.5100 - 1.4800 0.98 8796 135 0.1983 0.2295 REMARK 3 19 1.4800 - 1.4500 0.97 8834 139 0.2013 0.2391 REMARK 3 20 1.4500 - 1.4300 0.91 8308 141 0.2192 0.2063 REMARK 3 21 1.4300 - 1.4100 0.92 8232 123 0.2292 0.2175 REMARK 3 22 1.4100 - 1.3800 0.94 8481 141 0.2363 0.2581 REMARK 3 23 1.3800 - 1.3600 0.95 8562 141 0.2422 0.2274 REMARK 3 24 1.3600 - 1.3400 0.96 8752 146 0.2487 0.2704 REMARK 3 25 1.3400 - 1.3300 0.96 8725 139 0.2581 0.2610 REMARK 3 26 1.3300 - 1.3100 0.97 8824 147 0.2590 0.2899 REMARK 3 27 1.3100 - 1.2900 0.97 8803 143 0.2802 0.3010 REMARK 3 28 1.2900 - 1.2800 0.97 8753 141 0.2871 0.3003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.123 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5032 REMARK 3 ANGLE : 0.821 6920 REMARK 3 CHIRALITY : 0.066 770 REMARK 3 PLANARITY : 0.007 924 REMARK 3 DIHEDRAL : 5.960 708 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0980 22.3136 9.1307 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.1076 REMARK 3 T33: 0.0542 T12: -0.0125 REMARK 3 T13: -0.0113 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.5964 L22: 6.5981 REMARK 3 L33: 2.6186 L12: 2.0277 REMARK 3 L13: -0.2684 L23: 0.6462 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: -0.1513 S13: -0.0353 REMARK 3 S21: 0.1633 S22: -0.1285 S23: 0.2221 REMARK 3 S31: 0.1185 S32: -0.2526 S33: 0.0746 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4881 32.0605 7.9864 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0891 REMARK 3 T33: 0.0838 T12: -0.0072 REMARK 3 T13: -0.0137 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.4489 L22: 0.4500 REMARK 3 L33: 1.7312 L12: 0.6800 REMARK 3 L13: -1.2993 L23: -0.2300 REMARK 3 S TENSOR REMARK 3 S11: 0.1085 S12: -0.2040 S13: 0.1032 REMARK 3 S21: 0.0520 S22: -0.0785 S23: 0.0167 REMARK 3 S31: -0.0560 S32: 0.0570 S33: -0.0328 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4349 24.0879 1.2073 REMARK 3 T TENSOR REMARK 3 T11: 0.0684 T22: 0.0511 REMARK 3 T33: 0.0696 T12: 0.0127 REMARK 3 T13: -0.0114 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.1253 L22: 1.8744 REMARK 3 L33: 3.2207 L12: 1.6600 REMARK 3 L13: -1.4832 L23: -1.7902 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: -0.1313 S13: -0.0838 REMARK 3 S21: -0.0077 S22: -0.0823 S23: -0.1017 REMARK 3 S31: 0.0606 S32: 0.1848 S33: 0.1248 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5063 27.0268 -9.8175 REMARK 3 T TENSOR REMARK 3 T11: 0.0770 T22: 0.0736 REMARK 3 T33: 0.0679 T12: 0.0022 REMARK 3 T13: -0.0073 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.3516 L22: 0.9794 REMARK 3 L33: 0.9700 L12: 0.2121 REMARK 3 L13: -0.1024 L23: -0.3093 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.1266 S13: 0.0253 REMARK 3 S21: -0.0571 S22: -0.0246 S23: -0.0221 REMARK 3 S31: -0.0253 S32: 0.0237 S33: 0.0314 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8723 21.9678 -16.1795 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.1139 REMARK 3 T33: 0.0663 T12: 0.0125 REMARK 3 T13: -0.0060 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 7.6465 L22: 7.4268 REMARK 3 L33: 0.7896 L12: -6.2493 REMARK 3 L13: 0.5975 L23: -0.9825 REMARK 3 S TENSOR REMARK 3 S11: 0.1279 S12: 0.3355 S13: -0.2190 REMARK 3 S21: -0.3203 S22: -0.0724 S23: 0.1702 REMARK 3 S31: 0.0893 S32: -0.0440 S33: -0.0489 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2849 28.2432 -2.9551 REMARK 3 T TENSOR REMARK 3 T11: 0.0692 T22: 0.0764 REMARK 3 T33: 0.0742 T12: -0.0030 REMARK 3 T13: -0.0124 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.7250 L22: 1.4189 REMARK 3 L33: 0.9956 L12: -0.8435 REMARK 3 L13: -0.4534 L23: 0.4249 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.0292 S13: 0.1495 REMARK 3 S21: -0.0157 S22: -0.0168 S23: -0.0272 REMARK 3 S31: -0.0317 S32: -0.0760 S33: -0.0233 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8802 34.3430 9.0837 REMARK 3 T TENSOR REMARK 3 T11: 0.0826 T22: 0.1853 REMARK 3 T33: 0.1239 T12: 0.0275 REMARK 3 T13: -0.0084 T23: -0.0683 REMARK 3 L TENSOR REMARK 3 L11: 3.2166 L22: 2.2048 REMARK 3 L33: 4.4457 L12: -0.5162 REMARK 3 L13: -0.0376 L23: 0.6059 REMARK 3 S TENSOR REMARK 3 S11: 0.0596 S12: -0.4104 S13: 0.3328 REMARK 3 S21: 0.2212 S22: -0.0537 S23: 0.0211 REMARK 3 S31: -0.1896 S32: -0.1499 S33: -0.0066 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7449 30.0774 55.1337 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.0666 REMARK 3 T33: 0.0688 T12: 0.0181 REMARK 3 T13: -0.0097 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.8419 L22: 3.7778 REMARK 3 L33: 2.7522 L12: 1.4727 REMARK 3 L13: 0.4426 L23: 1.1332 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.2434 S13: 0.1912 REMARK 3 S21: 0.1364 S22: -0.0617 S23: 0.1212 REMARK 3 S31: -0.0092 S32: -0.0596 S33: 0.0534 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1124 34.2714 48.6446 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.0769 REMARK 3 T33: 0.0979 T12: 0.0001 REMARK 3 T13: -0.0155 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.2685 L22: 0.3995 REMARK 3 L33: 1.6774 L12: 0.5169 REMARK 3 L13: -1.0637 L23: -0.5974 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.1223 S13: 0.0464 REMARK 3 S21: 0.0315 S22: -0.0306 S23: -0.0333 REMARK 3 S31: -0.0577 S32: 0.1219 S33: -0.0408 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2001 26.5795 43.8838 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.0712 REMARK 3 T33: 0.1138 T12: 0.0109 REMARK 3 T13: -0.0129 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.8562 L22: 0.7093 REMARK 3 L33: 1.9676 L12: 0.7437 REMARK 3 L13: -1.0652 L23: -0.7337 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.0727 S13: -0.0987 REMARK 3 S21: 0.0071 S22: -0.0623 S23: -0.0534 REMARK 3 S31: 0.0731 S32: 0.1475 S33: 0.1330 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4423 29.5042 32.9076 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.0771 REMARK 3 T33: 0.0956 T12: -0.0095 REMARK 3 T13: 0.0004 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.4469 L22: 0.4337 REMARK 3 L33: 0.6927 L12: 0.1406 REMARK 3 L13: 0.2299 L23: -0.2199 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: 0.1229 S13: 0.0267 REMARK 3 S21: -0.0541 S22: 0.0274 S23: -0.0278 REMARK 3 S31: 0.0150 S32: 0.0595 S33: 0.0096 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1356 25.0828 26.1663 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.0914 REMARK 3 T33: 0.0691 T12: -0.0189 REMARK 3 T13: -0.0019 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 7.8875 L22: 8.3383 REMARK 3 L33: 1.4231 L12: -7.3104 REMARK 3 L13: 2.0442 L23: -2.1495 REMARK 3 S TENSOR REMARK 3 S11: 0.1309 S12: 0.3600 S13: -0.1978 REMARK 3 S21: -0.2142 S22: -0.0737 S23: 0.0912 REMARK 3 S31: 0.1124 S32: 0.0950 S33: -0.0427 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 197 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3307 29.7479 39.2687 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: 0.0642 REMARK 3 T33: 0.0869 T12: -0.0120 REMARK 3 T13: -0.0144 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.6966 L22: 1.0049 REMARK 3 L33: 1.1537 L12: -0.8447 REMARK 3 L13: -0.8145 L23: 0.7444 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.0971 S13: 0.0633 REMARK 3 S21: -0.0127 S22: -0.0015 S23: -0.0150 REMARK 3 S31: 0.0166 S32: -0.0879 S33: -0.0196 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 271 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3295 38.5300 51.3598 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.1066 REMARK 3 T33: 0.1183 T12: 0.0382 REMARK 3 T13: -0.0052 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 5.0770 L22: 3.8267 REMARK 3 L33: 4.5241 L12: 0.6484 REMARK 3 L13: 0.5313 L23: 1.1937 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: -0.1837 S13: 0.3675 REMARK 3 S21: 0.0447 S22: -0.0243 S23: -0.1655 REMARK 3 S31: -0.2980 S32: -0.0597 S33: -0.0067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126111 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.277 REMARK 200 RESOLUTION RANGE LOW (A) : 48.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BS0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE AND 5% REMARK 280 ISOPROPANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.48500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 276 REMARK 465 ALA A 277 REMARK 465 SER A 278 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 GLU B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 275 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 275 CZ3 CH2 REMARK 470 ARG B 276 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 696 O HOH A 704 2.07 REMARK 500 O HOH A 656 O HOH A 782 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 -20.61 -145.31 REMARK 500 THR A 208 63.23 67.46 REMARK 500 MET A 237 53.92 -119.84 REMARK 500 VAL A 269 -68.51 -98.27 REMARK 500 THR A 280 62.42 29.12 REMARK 500 ASN B 47 -20.07 -146.69 REMARK 500 THR B 208 60.36 67.61 REMARK 500 VAL B 269 -68.49 -98.64 REMARK 500 THR B 280 63.84 27.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 885 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 886 DISTANCE = 7.03 ANGSTROMS DBREF 7K4Q A 2 303 UNP P23360 XYNA_THEAU 28 329 DBREF 7K4Q B 2 303 UNP P23360 XYNA_THEAU 28 329 SEQADV 7K4Q GLY A -4 UNP P23360 EXPRESSION TAG SEQADV 7K4Q SER A -3 UNP P23360 EXPRESSION TAG SEQADV 7K4Q GLY A -2 UNP P23360 EXPRESSION TAG SEQADV 7K4Q MET A -1 UNP P23360 EXPRESSION TAG SEQADV 7K4Q ALA A 0 UNP P23360 EXPRESSION TAG SEQADV 7K4Q GLU A 1 UNP P23360 EXPRESSION TAG SEQADV 7K4Q MET A 42 UNP P23360 GLN 68 CONFLICT SEQADV 7K4Q TRP A 44 UNP P23360 THR 70 CONFLICT SEQADV 7K4Q GLY A 81 UNP P23360 ARG 107 CONFLICT SEQADV 7K4Q GLY A 83 UNP P23360 HIS 109 CONFLICT SEQADV 7K4Q MET A 84 UNP P23360 THR 110 CONFLICT SEQADV 7K4Q GLY A 130 UNP P23360 ASN 156 CONFLICT SEQADV 7K4Q MET A 172 UNP P23360 ASN 198 CONFLICT SEQADV 7K4Q SER A 234 UNP P23360 ALA 260 CONFLICT SEQADV 7K4Q LEU A 236 UNP P23360 THR 262 CONFLICT SEQADV 7K4Q MET A 237 UNP P23360 GLU 263 CONFLICT SEQADV 7K4Q PHE A 267 UNP P23360 TRP 293 CONFLICT SEQADV 7K4Q GLY B -4 UNP P23360 EXPRESSION TAG SEQADV 7K4Q SER B -3 UNP P23360 EXPRESSION TAG SEQADV 7K4Q GLY B -2 UNP P23360 EXPRESSION TAG SEQADV 7K4Q MET B -1 UNP P23360 EXPRESSION TAG SEQADV 7K4Q ALA B 0 UNP P23360 EXPRESSION TAG SEQADV 7K4Q GLU B 1 UNP P23360 EXPRESSION TAG SEQADV 7K4Q MET B 42 UNP P23360 GLN 68 CONFLICT SEQADV 7K4Q TRP B 44 UNP P23360 THR 70 CONFLICT SEQADV 7K4Q GLY B 81 UNP P23360 ARG 107 CONFLICT SEQADV 7K4Q GLY B 83 UNP P23360 HIS 109 CONFLICT SEQADV 7K4Q MET B 84 UNP P23360 THR 110 CONFLICT SEQADV 7K4Q GLY B 130 UNP P23360 ASN 156 CONFLICT SEQADV 7K4Q MET B 172 UNP P23360 ASN 198 CONFLICT SEQADV 7K4Q SER B 234 UNP P23360 ALA 260 CONFLICT SEQADV 7K4Q LEU B 236 UNP P23360 THR 262 CONFLICT SEQADV 7K4Q MET B 237 UNP P23360 GLU 263 CONFLICT SEQADV 7K4Q PHE B 267 UNP P23360 TRP 293 CONFLICT SEQRES 1 A 308 GLY SER GLY MET ALA GLU ALA ALA GLN SER VAL ASP GLN SEQRES 2 A 308 LEU ILE LYS ALA ARG GLY LYS VAL TYR PHE GLY VAL ALA SEQRES 3 A 308 THR ASP GLN ASN ARG LEU THR THR GLY LYS ASN ALA ALA SEQRES 4 A 308 ILE ILE GLN ALA ASP PHE GLY MET VAL TRP PRO GLU ASN SEQRES 5 A 308 SER MET LYS TRP ASP ALA THR GLU PRO SER GLN GLY ASN SEQRES 6 A 308 PHE ASN PHE ALA GLY ALA ASP TYR LEU VAL ASN TRP ALA SEQRES 7 A 308 GLN GLN ASN GLY LYS LEU ILE GLY GLY GLY MET LEU VAL SEQRES 8 A 308 TRP HIS SER GLN LEU PRO SER TRP VAL SER SER ILE THR SEQRES 9 A 308 ASP LYS ASN THR LEU THR ASN VAL MET LYS ASN HIS ILE SEQRES 10 A 308 THR THR LEU MET THR ARG TYR LYS GLY LYS ILE ARG ALA SEQRES 11 A 308 TRP ASP VAL VAL GLY GLU ALA PHE ASN GLU ASP GLY SER SEQRES 12 A 308 LEU ARG GLN THR VAL PHE LEU ASN VAL ILE GLY GLU ASP SEQRES 13 A 308 TYR ILE PRO ILE ALA PHE GLN THR ALA ARG ALA ALA ASP SEQRES 14 A 308 PRO ASN ALA LYS LEU TYR ILE MET ASP TYR ASN LEU ASP SEQRES 15 A 308 SER ALA SER TYR PRO LYS THR GLN ALA ILE VAL ASN ARG SEQRES 16 A 308 VAL LYS GLN TRP ARG ALA ALA GLY VAL PRO ILE ASP GLY SEQRES 17 A 308 ILE GLY SER GLN THR HIS LEU SER ALA GLY GLN GLY ALA SEQRES 18 A 308 GLY VAL LEU GLN ALA LEU PRO LEU LEU ALA SER ALA GLY SEQRES 19 A 308 THR PRO GLU VAL SER ILE LEU MET LEU ASP VAL ALA GLY SEQRES 20 A 308 ALA SER PRO THR ASP TYR VAL ASN VAL VAL ASN ALA CYS SEQRES 21 A 308 LEU ASN VAL GLN SER CYS VAL GLY ILE THR VAL PHE GLY SEQRES 22 A 308 VAL ALA ASP PRO ASP SER TRP ARG ALA SER THR THR PRO SEQRES 23 A 308 LEU LEU PHE ASP GLY ASN PHE ASN PRO LYS PRO ALA TYR SEQRES 24 A 308 ASN ALA ILE VAL GLN ASP LEU GLN GLN SEQRES 1 B 308 GLY SER GLY MET ALA GLU ALA ALA GLN SER VAL ASP GLN SEQRES 2 B 308 LEU ILE LYS ALA ARG GLY LYS VAL TYR PHE GLY VAL ALA SEQRES 3 B 308 THR ASP GLN ASN ARG LEU THR THR GLY LYS ASN ALA ALA SEQRES 4 B 308 ILE ILE GLN ALA ASP PHE GLY MET VAL TRP PRO GLU ASN SEQRES 5 B 308 SER MET LYS TRP ASP ALA THR GLU PRO SER GLN GLY ASN SEQRES 6 B 308 PHE ASN PHE ALA GLY ALA ASP TYR LEU VAL ASN TRP ALA SEQRES 7 B 308 GLN GLN ASN GLY LYS LEU ILE GLY GLY GLY MET LEU VAL SEQRES 8 B 308 TRP HIS SER GLN LEU PRO SER TRP VAL SER SER ILE THR SEQRES 9 B 308 ASP LYS ASN THR LEU THR ASN VAL MET LYS ASN HIS ILE SEQRES 10 B 308 THR THR LEU MET THR ARG TYR LYS GLY LYS ILE ARG ALA SEQRES 11 B 308 TRP ASP VAL VAL GLY GLU ALA PHE ASN GLU ASP GLY SER SEQRES 12 B 308 LEU ARG GLN THR VAL PHE LEU ASN VAL ILE GLY GLU ASP SEQRES 13 B 308 TYR ILE PRO ILE ALA PHE GLN THR ALA ARG ALA ALA ASP SEQRES 14 B 308 PRO ASN ALA LYS LEU TYR ILE MET ASP TYR ASN LEU ASP SEQRES 15 B 308 SER ALA SER TYR PRO LYS THR GLN ALA ILE VAL ASN ARG SEQRES 16 B 308 VAL LYS GLN TRP ARG ALA ALA GLY VAL PRO ILE ASP GLY SEQRES 17 B 308 ILE GLY SER GLN THR HIS LEU SER ALA GLY GLN GLY ALA SEQRES 18 B 308 GLY VAL LEU GLN ALA LEU PRO LEU LEU ALA SER ALA GLY SEQRES 19 B 308 THR PRO GLU VAL SER ILE LEU MET LEU ASP VAL ALA GLY SEQRES 20 B 308 ALA SER PRO THR ASP TYR VAL ASN VAL VAL ASN ALA CYS SEQRES 21 B 308 LEU ASN VAL GLN SER CYS VAL GLY ILE THR VAL PHE GLY SEQRES 22 B 308 VAL ALA ASP PRO ASP SER TRP ARG ALA SER THR THR PRO SEQRES 23 B 308 LEU LEU PHE ASP GLY ASN PHE ASN PRO LYS PRO ALA TYR SEQRES 24 B 308 ASN ALA ILE VAL GLN ASP LEU GLN GLN HET 6NT A 401 16 HET SO4 A 402 5 HET 6NT B 401 16 HET SO4 B 402 5 HETNAM 6NT 6-NITROBENZOTRIAZOLE HETNAM SO4 SULFATE ION FORMUL 3 6NT 2(C6 H4 N4 O2) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *781(H2 O) HELIX 1 AA1 SER A 5 ARG A 13 1 9 HELIX 2 AA2 ASP A 23 THR A 28 1 6 HELIX 3 AA3 LYS A 31 PHE A 40 1 10 HELIX 4 AA4 LYS A 50 GLU A 55 1 6 HELIX 5 AA5 PHE A 63 ASN A 76 1 14 HELIX 6 AA6 PRO A 92 SER A 97 1 6 HELIX 7 AA7 ASP A 100 TYR A 119 1 20 HELIX 8 AA8 THR A 142 GLY A 149 1 8 HELIX 9 AA9 ASP A 151 ASP A 164 1 14 HELIX 10 AB1 TYR A 181 ALA A 197 1 17 HELIX 11 AB2 GLN A 214 SER A 227 1 14 HELIX 12 AB3 SER A 244 VAL A 258 1 15 HELIX 13 AB4 ALA A 270 SER A 274 5 5 HELIX 14 AB5 LYS A 291 GLN A 302 1 12 HELIX 15 AB6 SER B 5 ARG B 13 1 9 HELIX 16 AB7 ASP B 23 THR B 28 1 6 HELIX 17 AB8 LYS B 31 PHE B 40 1 10 HELIX 18 AB9 LYS B 50 GLU B 55 1 6 HELIX 19 AC1 PHE B 63 ASN B 76 1 14 HELIX 20 AC2 PRO B 92 SER B 97 1 6 HELIX 21 AC3 ASP B 100 TYR B 119 1 20 HELIX 22 AC4 THR B 142 GLY B 149 1 8 HELIX 23 AC5 ASP B 151 ASP B 164 1 14 HELIX 24 AC6 TYR B 181 ALA B 197 1 17 HELIX 25 AC7 GLN B 214 SER B 227 1 14 HELIX 26 AC8 SER B 244 VAL B 258 1 15 HELIX 27 AC9 ALA B 270 SER B 274 5 5 HELIX 28 AD1 ARG B 276 THR B 280 5 5 HELIX 29 AD2 LYS B 291 GLN B 302 1 12 SHEET 1 AA1 9 TYR A 17 THR A 22 0 SHEET 2 AA1 9 MET A 42 PRO A 45 1 O TRP A 44 N THR A 22 SHEET 3 AA1 9 LEU A 79 GLY A 82 1 O GLY A 81 N VAL A 43 SHEET 4 AA1 9 ALA A 125 GLY A 130 1 O ASP A 127 N GLY A 82 SHEET 5 AA1 9 LYS A 168 TYR A 174 1 O TYR A 170 N TRP A 126 SHEET 6 AA1 9 GLY A 203 LEU A 210 1 O GLN A 207 N ASP A 173 SHEET 7 AA1 9 GLU A 232 VAL A 240 1 O SER A 234 N SER A 206 SHEET 8 AA1 9 CYS A 261 VAL A 266 1 O THR A 265 N LEU A 238 SHEET 9 AA1 9 TYR A 17 THR A 22 1 N GLY A 19 O ILE A 264 SHEET 1 AA2 9 TYR B 17 THR B 22 0 SHEET 2 AA2 9 MET B 42 PRO B 45 1 O TRP B 44 N THR B 22 SHEET 3 AA2 9 LEU B 79 GLY B 82 1 O GLY B 81 N VAL B 43 SHEET 4 AA2 9 ALA B 125 GLY B 130 1 O ASP B 127 N GLY B 82 SHEET 5 AA2 9 LYS B 168 TYR B 174 1 O TYR B 170 N TRP B 126 SHEET 6 AA2 9 GLY B 203 LEU B 210 1 O GLN B 207 N ASP B 173 SHEET 7 AA2 9 GLU B 232 VAL B 240 1 O SER B 234 N SER B 206 SHEET 8 AA2 9 CYS B 261 VAL B 266 1 O THR B 265 N LEU B 238 SHEET 9 AA2 9 TYR B 17 THR B 22 1 N GLY B 19 O ILE B 264 SSBOND 1 CYS A 255 CYS A 261 1555 1555 2.07 SSBOND 2 CYS B 255 CYS B 261 1555 1555 2.07 CISPEP 1 GLY A 83 MET A 84 0 -2.72 CISPEP 2 GLY A 83 MET A 84 0 -3.43 CISPEP 3 GLY A 83 MET A 84 0 -6.42 CISPEP 4 GLY B 83 MET B 84 0 -5.41 CISPEP 5 GLY B 83 MET B 84 0 4.22 CRYST1 50.640 58.970 88.760 90.00 104.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019747 0.000000 0.005269 0.00000 SCALE2 0.000000 0.016958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011661 0.00000