HEADER TRANSFERASE/DNA 17-SEP-20 7K5U TITLE BST DNA POLYMERASE I TIME-RESOLVED STRUCTURE, 48 HR POST DATP AND DCTP TITLE 2 ADDITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*CP*GP*AP*TP*CP*AP*CP*GP*TP*AP*C)-3'); COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*C)-3'); COMPND 7 CHAIN: T; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE I; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: BST DNA POLYMERASE I; COMPND 13 EC: 2.7.7.7; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 11 ORGANISM_TAXID: 1422; SOURCE 12 GENE: POLA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA POLYMERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.CHIM,R.A.MEZA,A.M.TRINH,J.C.CHAPUT REVDAT 3 18-OCT-23 7K5U 1 REMARK REVDAT 2 19-MAY-21 7K5U 1 JRNL REVDAT 1 03-MAR-21 7K5U 0 JRNL AUTH N.CHIM,R.A.MEZA,A.M.TRINH,K.YANG,J.C.CHAPUT JRNL TITL FOLLOWING REPLICATIVE DNA SYNTHESIS BY TIME-RESOLVED X-RAY JRNL TITL 2 CRYSTALLOGRAPHY. JRNL REF NAT COMMUN V. 12 2641 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33976175 JRNL DOI 10.1038/S41467-021-22937-Z REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 57156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0600 - 4.1600 0.99 6654 148 0.1644 0.1887 REMARK 3 2 4.1600 - 3.3000 0.99 6402 135 0.1724 0.2312 REMARK 3 3 3.3000 - 2.8800 0.99 6358 136 0.1946 0.2335 REMARK 3 4 2.8800 - 2.6200 0.99 6290 140 0.1971 0.2380 REMARK 3 5 2.6200 - 2.4300 0.99 6296 144 0.1912 0.2527 REMARK 3 6 2.4300 - 2.2900 0.99 6258 134 0.1884 0.2248 REMARK 3 7 2.2900 - 2.1700 0.84 5278 112 0.2845 0.2888 REMARK 3 8 2.1700 - 2.0800 0.99 6238 140 0.1979 0.2575 REMARK 3 9 2.0800 - 2.0000 0.98 6168 125 0.2461 0.2890 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.237 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5277 REMARK 3 ANGLE : 0.842 7235 REMARK 3 CHIRALITY : 0.052 814 REMARK 3 PLANARITY : 0.005 855 REMARK 3 DIHEDRAL : 10.627 3146 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6094 29.8288 32.8726 REMARK 3 T TENSOR REMARK 3 T11: 0.4723 T22: 0.4808 REMARK 3 T33: 0.4741 T12: 0.0529 REMARK 3 T13: 0.0401 T23: -0.1493 REMARK 3 L TENSOR REMARK 3 L11: 1.3980 L22: 0.7216 REMARK 3 L33: 2.0213 L12: -0.2696 REMARK 3 L13: -1.1428 L23: 0.6678 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.9498 S13: -0.3657 REMARK 3 S21: 0.0609 S22: -0.2373 S23: -0.0432 REMARK 3 S31: 0.5584 S32: -0.0133 S33: 0.4266 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 3 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6784 28.1060 32.8469 REMARK 3 T TENSOR REMARK 3 T11: 0.8135 T22: 0.3970 REMARK 3 T33: 0.4612 T12: 0.3050 REMARK 3 T13: -0.0516 T23: -0.1034 REMARK 3 L TENSOR REMARK 3 L11: 2.6378 L22: 0.8091 REMARK 3 L33: 2.2214 L12: 0.0651 REMARK 3 L13: 0.3761 L23: -1.3048 REMARK 3 S TENSOR REMARK 3 S11: -0.2950 S12: 0.1267 S13: -0.3387 REMARK 3 S21: 0.7605 S22: 0.3610 S23: -0.1460 REMARK 3 S31: 1.2181 S32: 0.3613 S33: -0.0836 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 467 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6957 26.1535 5.6999 REMARK 3 T TENSOR REMARK 3 T11: 0.1533 T22: 0.1445 REMARK 3 T33: 0.1268 T12: -0.0059 REMARK 3 T13: 0.0086 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.5315 L22: 1.4481 REMARK 3 L33: 0.7973 L12: 0.4486 REMARK 3 L13: -0.2562 L23: -0.0312 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: 0.1512 S13: -0.0582 REMARK 3 S21: -0.2110 S22: 0.0582 S23: -0.0547 REMARK 3 S31: 0.0790 S32: 0.0026 S33: -0.0232 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 468 THROUGH 522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3701 43.6740 25.2438 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.2073 REMARK 3 T33: 0.1561 T12: 0.0054 REMARK 3 T13: 0.0181 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0824 L22: 1.0285 REMARK 3 L33: 1.1458 L12: -0.0367 REMARK 3 L13: -0.1402 L23: -0.4237 REMARK 3 S TENSOR REMARK 3 S11: -0.1112 S12: -0.0290 S13: 0.2767 REMARK 3 S21: 0.0824 S22: -0.0603 S23: -0.1143 REMARK 3 S31: -0.1121 S32: 0.3422 S33: 0.0817 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 523 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6373 37.0025 39.9506 REMARK 3 T TENSOR REMARK 3 T11: 0.4668 T22: 0.3630 REMARK 3 T33: 0.2614 T12: 0.0437 REMARK 3 T13: -0.0204 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.1787 L22: 0.7034 REMARK 3 L33: 2.3561 L12: -0.2469 REMARK 3 L13: 1.1492 L23: 0.1206 REMARK 3 S TENSOR REMARK 3 S11: 0.1224 S12: 0.0122 S13: 0.0414 REMARK 3 S21: 0.3273 S22: 0.0434 S23: -0.1048 REMARK 3 S31: 0.6116 S32: 0.2317 S33: -0.0683 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 676 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6662 47.1160 30.5973 REMARK 3 T TENSOR REMARK 3 T11: 0.1489 T22: 0.1388 REMARK 3 T33: 0.1711 T12: 0.0023 REMARK 3 T13: -0.0190 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.5772 L22: 0.7725 REMARK 3 L33: 1.0373 L12: -0.2721 REMARK 3 L13: -0.4372 L23: 0.1492 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.0591 S13: 0.0417 REMARK 3 S21: 0.0553 S22: -0.0204 S23: -0.1281 REMARK 3 S31: 0.0083 S32: 0.0781 S33: 0.0173 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 677 THROUGH 743 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5986 44.3739 53.0678 REMARK 3 T TENSOR REMARK 3 T11: 0.2651 T22: 0.2275 REMARK 3 T33: 0.2559 T12: 0.0291 REMARK 3 T13: -0.0576 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.5568 L22: 1.2018 REMARK 3 L33: 1.5537 L12: 0.7278 REMARK 3 L13: 1.1634 L23: -0.1328 REMARK 3 S TENSOR REMARK 3 S11: 0.1768 S12: -0.1092 S13: -0.3098 REMARK 3 S21: 0.1767 S22: -0.0615 S23: -0.1339 REMARK 3 S31: 0.2390 S32: -0.0264 S33: -0.0817 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 744 THROUGH 876 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6735 43.4226 30.1449 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1490 REMARK 3 T33: 0.1327 T12: -0.0056 REMARK 3 T13: 0.0019 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.6922 L22: 1.3228 REMARK 3 L33: 0.6793 L12: 0.3700 REMARK 3 L13: -0.3137 L23: -0.3752 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: -0.0364 S13: 0.0200 REMARK 3 S21: 0.1444 S22: -0.0623 S23: -0.0179 REMARK 3 S31: -0.0092 S32: -0.0089 S33: -0.0135 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOXDS REMARK 200 DATA SCALING SOFTWARE : AUTOXDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58064 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06405 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DSY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% AMMONIUM SULFATE, 0.1M MES, 2% REMARK 280 MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.64950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.61050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.74550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.61050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.64950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.74550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, T, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG P 1 REMARK 465 DG T 1 REMARK 465 DA T 2 REMARK 465 DA T 16 REMARK 465 ALA A 297 REMARK 465 LYS A 298 REMARK 465 MET A 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 435 O HOH A 1001 1.93 REMARK 500 OP2 DA T 11 O HOH T 101 1.94 REMARK 500 O HOH A 1333 O HOH A 1372 1.95 REMARK 500 O HOH A 1366 O HOH A 1423 1.95 REMARK 500 N4 DC P 2 O HOH P 101 1.95 REMARK 500 O HOH A 1351 O HOH A 1365 2.00 REMARK 500 O HOH A 1119 O HOH A 1390 2.01 REMARK 500 O HOH A 1303 O HOH A 1338 2.01 REMARK 500 O TYR A 554 O HOH A 1002 2.02 REMARK 500 O HOH A 1361 O HOH A 1376 2.02 REMARK 500 OE2 GLU A 817 O HOH A 1003 2.03 REMARK 500 OP2 DA T 6 O HOH T 102 2.03 REMARK 500 O2 SO4 A 901 O HOH A 1004 2.05 REMARK 500 O HOH A 1384 O HOH A 1415 2.05 REMARK 500 O4 DT T 9 O HOH T 103 2.06 REMARK 500 O HOH A 1009 O HOH A 1376 2.06 REMARK 500 OG1 THR A 552 O HOH A 1005 2.06 REMARK 500 O HOH A 1279 O HOH A 1424 2.07 REMARK 500 O HOH A 1047 O HOH A 1302 2.07 REMARK 500 OD1 ASN A 670 O HOH A 1006 2.08 REMARK 500 O HOH A 1458 O HOH A 1459 2.08 REMARK 500 O HOH A 1057 O HOH A 1088 2.10 REMARK 500 O ALA A 508 O HOH A 1007 2.10 REMARK 500 NZ LYS A 684 O HOH A 1006 2.11 REMARK 500 O HOH A 1353 O HOH A 1440 2.12 REMARK 500 NH2 ARG A 499 OE1 GLN A 638 2.12 REMARK 500 O HOH A 1030 O HOH A 1219 2.14 REMARK 500 O3' DC T 3 O HOH T 104 2.15 REMARK 500 OE1 GLU A 540 O HOH A 1008 2.15 REMARK 500 O HOH A 1251 O HOH A 1381 2.16 REMARK 500 O HOH A 1327 O HOH A 1448 2.16 REMARK 500 NZ LYS A 549 O HOH A 1009 2.18 REMARK 500 O2 DC P 12 N2 DG T 4 2.18 REMARK 500 OE1 GLU A 458 O HOH A 1010 2.18 REMARK 500 N ASP A 718 O HOH A 1011 2.18 REMARK 500 OE2 GLU A 694 O HOH A 1012 2.18 REMARK 500 O HOH A 1352 O HOH A 1428 2.18 REMARK 500 O HOH A 1226 O HOH A 1418 2.19 REMARK 500 O HOH A 1443 O HOH A 1452 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1225 O HOH A 1346 3545 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT P 10 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC T 15 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 402 94.29 -169.23 REMARK 500 ALA A 421 44.83 -87.12 REMARK 500 THR A 550 -145.25 -88.06 REMARK 500 ILE A 588 -70.76 -101.19 REMARK 500 LEU A 610 -53.21 -129.25 REMARK 500 ILE A 628 -29.34 -150.83 REMARK 500 HIS A 829 -53.50 73.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1457 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1458 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A1459 DISTANCE = 7.30 ANGSTROMS DBREF 7K5U P 1 12 PDB 7K5U 7K5U 1 12 DBREF 7K5U T 1 16 PDB 7K5U 7K5U 1 16 DBREF 7K5U A 297 876 UNP E1C9K5 E1C9K5_GEOSE 1 580 SEQADV 7K5U THR A 550 UNP E1C9K5 SER 254 VARIANT SEQRES 1 P 12 DG DC DG DA DT DC DA DC DG DT DA DC SEQRES 1 T 16 DG DA DC DG DT DA DC DG DT DG DA DT DC SEQRES 2 T 16 DG DC DA SEQRES 1 A 580 ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 2 A 580 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 3 A 580 VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE SEQRES 4 A 580 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 5 A 580 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 6 A 580 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 7 A 580 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 8 A 580 CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 9 A 580 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 10 A 580 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 11 A 580 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 12 A 580 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 13 A 580 ALA ILE TRP ALA LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 14 A 580 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 15 A 580 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 16 A 580 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 17 A 580 GLU GLU LEU ALA GLU GLN LEU ARG THR VAL GLU GLN ARG SEQRES 18 A 580 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 19 A 580 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 20 A 580 LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SEQRES 21 A 580 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 22 A 580 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 23 A 580 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 24 A 580 ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 25 A 580 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 26 A 580 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 27 A 580 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 28 A 580 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 29 A 580 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 30 A 580 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 31 A 580 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 32 A 580 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE SEQRES 33 A 580 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 34 A 580 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 35 A 580 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 36 A 580 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 37 A 580 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 38 A 580 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 39 A 580 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 40 A 580 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 41 A 580 GLU GLU ARG LEU GLN ALA ARG LEU LEU LEU GLN VAL HIS SEQRES 42 A 580 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 43 A 580 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 44 A 580 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 45 A 580 GLY SER THR TRP TYR ASP ALA LYS HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *499(H2 O) HELIX 1 AA1 THR A 308 ALA A 313 5 6 HELIX 2 AA2 ARG A 347 LEU A 352 1 6 HELIX 3 AA3 ASP A 354 ASP A 363 1 10 HELIX 4 AA4 ASP A 372 TRP A 382 1 11 HELIX 5 AA5 LEU A 394 ASP A 402 1 9 HELIX 6 AA6 PRO A 403 GLY A 406 5 4 HELIX 7 AA7 ASP A 409 MET A 416 1 8 HELIX 8 AA8 PRO A 424 GLY A 430 1 7 HELIX 9 AA9 LYS A 431 ARG A 435 5 5 HELIX 10 AB1 ASP A 439 ASN A 468 1 30 HELIX 11 AB2 GLN A 470 LEU A 477 1 8 HELIX 12 AB3 LEU A 477 GLY A 492 1 16 HELIX 13 AB4 ASP A 496 GLY A 523 1 28 HELIX 14 AB5 SER A 530 GLU A 540 1 11 HELIX 15 AB6 SER A 557 ALA A 565 1 9 HELIX 16 AB7 PRO A 566 HIS A 568 5 3 HELIX 17 AB8 GLU A 569 TYR A 587 1 19 HELIX 18 AB9 ILE A 588 VAL A 595 1 8 HELIX 19 AC1 LEU A 630 LYS A 635 1 6 HELIX 20 AC2 ILE A 636 GLN A 638 5 3 HELIX 21 AC3 GLN A 656 GLU A 667 1 12 HELIX 22 AC4 ASP A 668 ARG A 677 1 10 HELIX 23 AC5 ASP A 680 GLN A 691 1 12 HELIX 24 AC6 SER A 693 VAL A 697 5 5 HELIX 25 AC7 THR A 698 GLY A 715 1 18 HELIX 26 AC8 SER A 717 ASN A 726 1 10 HELIX 27 AC9 SER A 728 PHE A 743 1 16 HELIX 28 AD1 PHE A 743 GLY A 761 1 19 HELIX 29 AD2 PRO A 774 SER A 778 5 5 HELIX 30 AD3 ASN A 780 GLU A 818 1 39 HELIX 31 AD4 GLU A 840 GLN A 854 1 15 SHEET 1 AA1 6 THR A 302 ALA A 304 0 SHEET 2 AA1 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 AA1 6 GLY A 334 ASN A 339 -1 N VAL A 337 O PHE A 344 SHEET 4 AA1 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 AA1 6 LYS A 367 MET A 370 1 O SER A 369 N LEU A 318 SHEET 6 AA1 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 AA2 3 LYS A 601 VAL A 602 0 SHEET 2 AA2 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 AA2 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 AA3 2 ILE A 605 ASN A 607 0 SHEET 2 AA3 2 SER A 617 THR A 619 -1 O SER A 617 N ASN A 607 SHEET 1 AA4 4 ARG A 823 GLN A 827 0 SHEET 2 AA4 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 AA4 4 TRP A 647 TYR A 654 -1 N PHE A 650 O LEU A 834 SHEET 4 AA4 4 VAL A 864 GLY A 869 -1 O ASP A 865 N ASP A 653 SHEET 1 AA5 2 TYR A 762 THR A 764 0 SHEET 2 AA5 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 CISPEP 1 GLU A 620 PRO A 621 0 1.37 CRYST1 87.299 93.491 105.221 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009504 0.00000