HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 18-SEP-20 7K62 TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM MYCOBACTERIUM TITLE 2 KANSASII IN COMPLEX WITH NADP AND INHIBITOR P218 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM KANSASII; SOURCE 3 ORGANISM_TAXID: 1768; SOURCE 4 GENE: FOLA, BZL29_1474, BZL30_0350; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MYKAA.01062.A.B1 KEYWDS SSGCID, TETRAHYDROFOLATE BIOSYNTHESIS, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, OXIDOREDUCTASE, KEYWDS 3 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7K62 1 REMARK REVDAT 1 17-MAR-21 7K62 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,V.SANTHAKUMAR,C.WALPOLE,D.D.LORIMER, JRNL AUTH 2 P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM JRNL TITL 2 MYCOBACTERIUM KANSASII IN COMPLEX WITH NADP AND INHIBITOR JRNL TITL 3 P218 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 22676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3900 - 4.9400 0.99 1595 166 0.1591 0.1817 REMARK 3 2 4.9400 - 3.9200 0.99 1498 152 0.1445 0.2103 REMARK 3 3 3.9200 - 3.4300 1.00 1520 134 0.1725 0.2296 REMARK 3 4 3.4200 - 3.1100 1.00 1504 139 0.2331 0.2753 REMARK 3 5 3.1100 - 2.8900 0.99 1480 141 0.2295 0.2930 REMARK 3 6 2.8900 - 2.7200 0.99 1454 153 0.2638 0.3390 REMARK 3 7 2.7200 - 2.5800 0.99 1486 127 0.2738 0.3715 REMARK 3 8 2.5800 - 2.4700 0.99 1438 154 0.2813 0.3570 REMARK 3 9 2.4700 - 2.3800 0.98 1479 128 0.2781 0.4130 REMARK 3 10 2.3800 - 2.2900 0.99 1465 123 0.2758 0.3859 REMARK 3 11 2.2900 - 2.2200 0.99 1448 133 0.2771 0.3843 REMARK 3 12 2.2200 - 2.1600 0.99 1449 150 0.2963 0.3513 REMARK 3 13 2.1600 - 2.1000 0.98 1452 139 0.3293 0.3603 REMARK 3 14 2.1000 - 2.0500 0.99 1430 139 0.3598 0.4326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.333 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.731 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2852 REMARK 3 ANGLE : 0.919 3904 REMARK 3 CHIRALITY : 0.052 402 REMARK 3 PLANARITY : 0.010 542 REMARK 3 DIHEDRAL : 15.995 1070 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4043 22.6942 -27.7537 REMARK 3 T TENSOR REMARK 3 T11: 0.2633 T22: 0.2494 REMARK 3 T33: 0.4314 T12: -0.0206 REMARK 3 T13: 0.0190 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.1183 L22: 4.5635 REMARK 3 L33: 5.5055 L12: -0.3277 REMARK 3 L13: 1.2851 L23: -0.9829 REMARK 3 S TENSOR REMARK 3 S11: -0.1806 S12: -0.1036 S13: 0.3118 REMARK 3 S21: -0.3055 S22: -0.0315 S23: -0.4776 REMARK 3 S31: -0.2597 S32: 0.1308 S33: 0.1967 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4484 29.0354 -32.3048 REMARK 3 T TENSOR REMARK 3 T11: 0.3620 T22: 0.3045 REMARK 3 T33: 0.5008 T12: -0.0084 REMARK 3 T13: 0.0238 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.8617 L22: 3.7446 REMARK 3 L33: 5.4149 L12: 2.6303 REMARK 3 L13: -0.1830 L23: -0.5036 REMARK 3 S TENSOR REMARK 3 S11: 0.1325 S12: -0.1441 S13: 0.9645 REMARK 3 S21: -0.4661 S22: -0.3202 S23: 0.0537 REMARK 3 S31: -0.8285 S32: -0.2149 S33: 0.1049 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0099 21.3011 -40.9723 REMARK 3 T TENSOR REMARK 3 T11: 0.5487 T22: 0.4289 REMARK 3 T33: 0.3040 T12: -0.0264 REMARK 3 T13: -0.0745 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 9.8260 L22: 5.2661 REMARK 3 L33: 5.2782 L12: 2.1416 REMARK 3 L13: 0.0367 L23: -0.3849 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: 1.0134 S13: -0.4751 REMARK 3 S21: -0.8339 S22: 0.3004 S23: 0.3871 REMARK 3 S31: 0.3816 S32: -0.1620 S33: -0.1802 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5281 13.6950 -33.7216 REMARK 3 T TENSOR REMARK 3 T11: 0.4254 T22: 0.3719 REMARK 3 T33: 0.4477 T12: 0.0696 REMARK 3 T13: 0.0444 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 3.7978 L22: 6.8319 REMARK 3 L33: 4.0686 L12: -1.3205 REMARK 3 L13: 0.6486 L23: -1.3597 REMARK 3 S TENSOR REMARK 3 S11: 0.2869 S12: 0.2383 S13: -0.6651 REMARK 3 S21: -0.7044 S22: -0.1516 S23: -0.3687 REMARK 3 S31: 0.4635 S32: 0.5896 S33: -0.0035 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5165 13.9702 -24.6058 REMARK 3 T TENSOR REMARK 3 T11: 0.2416 T22: 0.3983 REMARK 3 T33: 0.4334 T12: -0.0447 REMARK 3 T13: -0.0952 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.7019 L22: 5.6421 REMARK 3 L33: 1.7320 L12: -0.5308 REMARK 3 L13: 0.7312 L23: -1.9759 REMARK 3 S TENSOR REMARK 3 S11: 0.1882 S12: -0.1181 S13: -0.5290 REMARK 3 S21: 0.0144 S22: -0.0547 S23: -0.0828 REMARK 3 S31: 0.1418 S32: -0.2820 S33: -0.2307 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8564 25.5324 -15.8675 REMARK 3 T TENSOR REMARK 3 T11: 0.4150 T22: 0.6062 REMARK 3 T33: 0.5959 T12: 0.0091 REMARK 3 T13: 0.0117 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 2.2522 L22: 9.3742 REMARK 3 L33: 7.1025 L12: 0.5625 REMARK 3 L13: 3.9816 L23: 0.3697 REMARK 3 S TENSOR REMARK 3 S11: -0.2282 S12: -0.7742 S13: -0.3197 REMARK 3 S21: -0.0365 S22: 0.4535 S23: 1.8005 REMARK 3 S31: 0.2678 S32: -1.2135 S33: -0.0868 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6907 7.8573 -18.8820 REMARK 3 T TENSOR REMARK 3 T11: 0.4065 T22: 0.3843 REMARK 3 T33: 0.4918 T12: -0.0671 REMARK 3 T13: -0.0518 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 7.0629 L22: 4.5443 REMARK 3 L33: 2.0940 L12: -4.5370 REMARK 3 L13: -0.5871 L23: 0.4004 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.3612 S13: -1.1297 REMARK 3 S21: 0.4564 S22: -0.3044 S23: 0.6006 REMARK 3 S31: -0.0422 S32: 0.3618 S33: 0.2336 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0954 17.0595 -11.7906 REMARK 3 T TENSOR REMARK 3 T11: 0.5166 T22: 0.3658 REMARK 3 T33: 0.4536 T12: -0.0469 REMARK 3 T13: -0.1054 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 2.1974 L22: 6.0169 REMARK 3 L33: 4.8073 L12: 3.4261 REMARK 3 L13: 1.4799 L23: 4.0600 REMARK 3 S TENSOR REMARK 3 S11: 0.3894 S12: -0.1856 S13: -0.5584 REMARK 3 S21: 1.4979 S22: -0.2999 S23: -0.6543 REMARK 3 S31: 0.5396 S32: 0.0676 S33: -0.0223 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -6 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1993 14.6369 -17.0404 REMARK 3 T TENSOR REMARK 3 T11: 0.4422 T22: 0.3229 REMARK 3 T33: 0.5836 T12: 0.0068 REMARK 3 T13: -0.1378 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 2.5110 L22: 6.4359 REMARK 3 L33: 2.9317 L12: -2.1615 REMARK 3 L13: 0.2663 L23: -0.0033 REMARK 3 S TENSOR REMARK 3 S11: -0.2501 S12: -0.1812 S13: 0.1962 REMARK 3 S21: 0.9652 S22: 0.0893 S23: -0.7424 REMARK 3 S31: -0.0696 S32: 0.1413 S33: 0.1155 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4732 10.7999 -2.1258 REMARK 3 T TENSOR REMARK 3 T11: 1.4743 T22: 0.4990 REMARK 3 T33: 0.4343 T12: 0.1470 REMARK 3 T13: 0.1623 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 5.1676 L22: 8.4688 REMARK 3 L33: 2.7252 L12: -1.9944 REMARK 3 L13: 1.5260 L23: -4.7791 REMARK 3 S TENSOR REMARK 3 S11: -0.1877 S12: -0.9697 S13: 0.5204 REMARK 3 S21: 2.4626 S22: 0.2707 S23: 0.4934 REMARK 3 S31: 0.0405 S32: -0.0209 S33: -0.1893 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8061 21.1578 -16.9899 REMARK 3 T TENSOR REMARK 3 T11: 0.4562 T22: 0.3473 REMARK 3 T33: 0.5058 T12: 0.0335 REMARK 3 T13: -0.0456 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.8628 L22: 9.2829 REMARK 3 L33: 2.2118 L12: -1.2841 REMARK 3 L13: -1.2062 L23: 0.8243 REMARK 3 S TENSOR REMARK 3 S11: -0.0961 S12: 0.0479 S13: 0.1368 REMARK 3 S21: 0.9255 S22: -0.0325 S23: -0.0612 REMARK 3 S31: -0.0798 S32: -0.1752 S33: 0.1366 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1470 19.2605 -31.1807 REMARK 3 T TENSOR REMARK 3 T11: 0.5314 T22: 0.4048 REMARK 3 T33: 0.6164 T12: 0.0738 REMARK 3 T13: 0.1251 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 2.5601 L22: 6.2819 REMARK 3 L33: 4.3900 L12: -1.5351 REMARK 3 L13: -0.7058 L23: 3.6465 REMARK 3 S TENSOR REMARK 3 S11: 0.1827 S12: 0.4318 S13: 0.1713 REMARK 3 S21: -1.2227 S22: -0.2756 S23: -0.9402 REMARK 3 S31: -0.1726 S32: -0.0489 S33: 0.0333 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -6 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2995 9.8001 -27.1601 REMARK 3 T TENSOR REMARK 3 T11: 0.5463 T22: 0.3753 REMARK 3 T33: 0.6534 T12: 0.0205 REMARK 3 T13: 0.0508 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 6.6201 L22: 7.1566 REMARK 3 L33: 4.8768 L12: -0.9696 REMARK 3 L13: 0.3169 L23: 0.0971 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: 0.4250 S13: -1.1205 REMARK 3 S21: -0.9838 S22: -0.1284 S23: -0.6405 REMARK 3 S31: 0.7405 S32: 0.6652 S33: 0.1705 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5759 26.9370 -17.5462 REMARK 3 T TENSOR REMARK 3 T11: 0.3235 T22: 0.3012 REMARK 3 T33: 0.3618 T12: 0.0183 REMARK 3 T13: 0.0703 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 8.1124 L22: 5.0277 REMARK 3 L33: 6.0824 L12: 0.0020 REMARK 3 L13: 3.0198 L23: 0.1482 REMARK 3 S TENSOR REMARK 3 S11: 0.1861 S12: 0.2711 S13: 0.8696 REMARK 3 S21: 0.5065 S22: -0.4366 S23: 0.2544 REMARK 3 S31: -0.3993 S32: -0.1049 S33: 0.2245 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22844 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.108 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.95 REMARK 200 R MERGE FOR SHELL (I) : 0.59800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: PDB ENTRY 1DF7 AS PER MORDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTICS MORPHEUS SCREEN, CONDITION REMARK 280 E4: 12.5% (W/V) PEG 1000, 12.5% (W/V) PEG 3350, 12.5% (V/V) MPD: REMARK 280 30MM OF EACH DIETHYLENEGLYCOL, TRIETHYLENEGLYCOL, REMARK 280 TETRAETHYLENEGLYCOL, PENTAETHYLENEGLYCOL: 100MM MES/IMIDAZOLE PH REMARK 280 6.5. MYKAA.01062.A.B1.PS38569 AT 5.22MG/ML + 2MM EACH NADP AND REMARK 280 P218: TRAY 309622 E4: CRYO: DIRECT: PUCK KDU7-7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.06000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.06000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ALA A -7 REMARK 465 MET B -8 REMARK 465 ALA B -7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 71 CG1 CG2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 VAL B 71 CG1 CG2 REMARK 470 ASP B 118 CG OD1 OD2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 106 O HOH A 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 118 90.57 -64.73 REMARK 500 PRO B 20 46.81 -88.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MMV A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MMV B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYKAA.01062.A RELATED DB: TARGETTRACK DBREF1 7K62 A 2 158 UNP A0A1V3XYG5_MYCKA DBREF2 7K62 A A0A1V3XYG5 2 158 DBREF1 7K62 B 2 158 UNP A0A1V3XYG5_MYCKA DBREF2 7K62 B A0A1V3XYG5 2 158 SEQADV 7K62 MET A -8 UNP A0A1V3XYG INITIATING METHIONINE SEQADV 7K62 ALA A -7 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS A -6 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS A -5 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS A -4 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS A -3 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS A -2 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS A -1 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 MET A 0 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 VAL A 1 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 MET B -8 UNP A0A1V3XYG INITIATING METHIONINE SEQADV 7K62 ALA B -7 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS B -6 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS B -5 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS B -4 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS B -3 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS B -2 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 HIS B -1 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 MET B 0 UNP A0A1V3XYG EXPRESSION TAG SEQADV 7K62 VAL B 1 UNP A0A1V3XYG EXPRESSION TAG SEQRES 1 A 167 MET ALA HIS HIS HIS HIS HIS HIS MET VAL GLY LEU ILE SEQRES 2 A 167 TRP ALA GLN SER THR SER GLY VAL ILE GLY ARG GLY GLY SEQRES 3 A 167 ASP ILE PRO TRP ARG VAL PRO GLU ASP LEU SER HIS PHE SEQRES 4 A 167 LYS ARG ILE THR MET GLY HIS THR VAL VAL MET GLY ARG SEQRES 5 A 167 ARG THR TRP ASP SER LEU PRO ALA SER ALA ARG PRO LEU SEQRES 6 A 167 PRO GLY ARG ARG ASN VAL VAL LEU SER ARG GLN PRO GLY SEQRES 7 A 167 PHE VAL ALA GLU GLY ALA GLU VAL VAL GLY SER LEU GLU SEQRES 8 A 167 ASP ALA LEU THR GLY PRO GLU ASP THR TRP VAL ILE GLY SEQRES 9 A 167 GLY GLU GLN ILE TYR THR LEU ALA LEU PRO ARG ALA ILE SEQRES 10 A 167 ARG CYS GLU VAL THR GLU VAL ASP VAL ASP LEU PRO ARG SEQRES 11 A 167 ASP ASP ASP ASP ALA LEU ALA PRO PRO LEU ASP GLU THR SEQRES 12 A 167 TRP GLN GLY ASP VAL GLY GLU TRP GLN VAL SER ARG SER SEQRES 13 A 167 GLY LEU ARG TYR ARG PHE HIS SER TYR TYR ARG SEQRES 1 B 167 MET ALA HIS HIS HIS HIS HIS HIS MET VAL GLY LEU ILE SEQRES 2 B 167 TRP ALA GLN SER THR SER GLY VAL ILE GLY ARG GLY GLY SEQRES 3 B 167 ASP ILE PRO TRP ARG VAL PRO GLU ASP LEU SER HIS PHE SEQRES 4 B 167 LYS ARG ILE THR MET GLY HIS THR VAL VAL MET GLY ARG SEQRES 5 B 167 ARG THR TRP ASP SER LEU PRO ALA SER ALA ARG PRO LEU SEQRES 6 B 167 PRO GLY ARG ARG ASN VAL VAL LEU SER ARG GLN PRO GLY SEQRES 7 B 167 PHE VAL ALA GLU GLY ALA GLU VAL VAL GLY SER LEU GLU SEQRES 8 B 167 ASP ALA LEU THR GLY PRO GLU ASP THR TRP VAL ILE GLY SEQRES 9 B 167 GLY GLU GLN ILE TYR THR LEU ALA LEU PRO ARG ALA ILE SEQRES 10 B 167 ARG CYS GLU VAL THR GLU VAL ASP VAL ASP LEU PRO ARG SEQRES 11 B 167 ASP ASP ASP ASP ALA LEU ALA PRO PRO LEU ASP GLU THR SEQRES 12 B 167 TRP GLN GLY ASP VAL GLY GLU TRP GLN VAL SER ARG SER SEQRES 13 B 167 GLY LEU ARG TYR ARG PHE HIS SER TYR TYR ARG HET NAP A 201 48 HET MMV A 202 26 HET EDO A 203 4 HET NAP B 201 48 HET MMV B 202 26 HET EDO B 203 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MMV 3-(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 MMV OXY]PROPOXY}PHENYL)PROPANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 MMV 2(C18 H24 N4 O4) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 9 HOH *94(H2 O) HELIX 1 AA1 VAL A 23 MET A 35 1 13 HELIX 2 AA2 ARG A 43 LEU A 49 1 7 HELIX 3 AA3 PRO A 50 ARG A 54 5 5 HELIX 4 AA4 SER A 80 LEU A 85 1 6 HELIX 5 AA5 GLY A 96 LEU A 104 1 9 HELIX 6 AA6 PRO A 105 ALA A 107 5 3 HELIX 7 AA7 VAL B 23 MET B 35 1 13 HELIX 8 AA8 ARG B 43 LEU B 49 1 7 HELIX 9 AA9 PRO B 50 ARG B 54 5 5 HELIX 10 AB1 SER B 80 LEU B 85 1 6 HELIX 11 AB2 GLY B 96 LEU B 104 1 9 HELIX 12 AB3 PRO B 105 ALA B 107 5 3 SHEET 1 AA1 8 GLU A 76 VAL A 78 0 SHEET 2 AA1 8 ARG A 60 LEU A 64 1 N VAL A 63 O GLU A 76 SHEET 3 AA1 8 THR A 38 GLY A 42 1 N VAL A 39 O ARG A 60 SHEET 4 AA1 8 THR A 91 VAL A 93 1 O TRP A 92 N THR A 38 SHEET 5 AA1 8 VAL A 1 SER A 8 1 N GLY A 2 O VAL A 93 SHEET 6 AA1 8 ARG A 109 ASP A 116 1 O THR A 113 N GLN A 7 SHEET 7 AA1 8 ARG A 150 TYR A 157 -1 O HIS A 154 N VAL A 112 SHEET 8 AA1 8 GLN A 136 VAL A 139 -1 N GLN A 136 O TYR A 157 SHEET 1 AA2 8 GLU A 76 VAL A 78 0 SHEET 2 AA2 8 ARG A 60 LEU A 64 1 N VAL A 63 O GLU A 76 SHEET 3 AA2 8 THR A 38 GLY A 42 1 N VAL A 39 O ARG A 60 SHEET 4 AA2 8 THR A 91 VAL A 93 1 O TRP A 92 N THR A 38 SHEET 5 AA2 8 VAL A 1 SER A 8 1 N GLY A 2 O VAL A 93 SHEET 6 AA2 8 ARG A 109 ASP A 116 1 O THR A 113 N GLN A 7 SHEET 7 AA2 8 ARG A 150 TYR A 157 -1 O HIS A 154 N VAL A 112 SHEET 8 AA2 8 GLN A 143 VAL A 144 -1 N GLN A 143 O TYR A 151 SHEET 1 AA3 2 VAL A 12 GLY A 14 0 SHEET 2 AA3 2 ALA A 126 LEU A 127 -1 O ALA A 126 N ILE A 13 SHEET 1 AA4 8 GLU B 76 VAL B 78 0 SHEET 2 AA4 8 ARG B 60 LEU B 64 1 N VAL B 63 O GLU B 76 SHEET 3 AA4 8 THR B 38 GLY B 42 1 N MET B 41 O LEU B 64 SHEET 4 AA4 8 THR B 91 VAL B 93 1 O TRP B 92 N THR B 38 SHEET 5 AA4 8 VAL B 1 SER B 8 1 N GLY B 2 O VAL B 93 SHEET 6 AA4 8 ARG B 109 ASP B 116 1 O THR B 113 N GLN B 7 SHEET 7 AA4 8 ARG B 150 TYR B 157 -1 O HIS B 154 N VAL B 112 SHEET 8 AA4 8 GLN B 136 VAL B 139 -1 N GLN B 136 O TYR B 157 SHEET 1 AA5 8 GLU B 76 VAL B 78 0 SHEET 2 AA5 8 ARG B 60 LEU B 64 1 N VAL B 63 O GLU B 76 SHEET 3 AA5 8 THR B 38 GLY B 42 1 N MET B 41 O LEU B 64 SHEET 4 AA5 8 THR B 91 VAL B 93 1 O TRP B 92 N THR B 38 SHEET 5 AA5 8 VAL B 1 SER B 8 1 N GLY B 2 O VAL B 93 SHEET 6 AA5 8 ARG B 109 ASP B 116 1 O THR B 113 N GLN B 7 SHEET 7 AA5 8 ARG B 150 TYR B 157 -1 O HIS B 154 N VAL B 112 SHEET 8 AA5 8 GLN B 143 VAL B 144 -1 N GLN B 143 O TYR B 151 SHEET 1 AA6 2 VAL B 12 GLY B 14 0 SHEET 2 AA6 2 ALA B 126 LEU B 127 -1 O ALA B 126 N ILE B 13 CISPEP 1 ARG A 54 PRO A 55 0 3.18 CISPEP 2 GLY A 95 GLY A 96 0 3.21 CISPEP 3 ARG B 54 PRO B 55 0 3.95 CISPEP 4 GLY B 95 GLY B 96 0 2.68 SITE 1 AC1 29 TRP A 5 ALA A 6 ILE A 13 GLY A 17 SITE 2 AC1 29 ASP A 18 GLY A 42 ARG A 43 ARG A 44 SITE 3 AC1 29 THR A 45 LEU A 64 SER A 65 ARG A 66 SITE 4 AC1 29 GLN A 67 GLY A 79 ILE A 94 GLY A 95 SITE 5 AC1 29 GLY A 96 GLU A 97 GLN A 98 ILE A 99 SITE 6 AC1 29 TYR A 100 LEU A 102 ALA A 126 MMV A 202 SITE 7 AC1 29 HOH A 315 HOH A 317 HOH A 327 HOH A 340 SITE 8 AC1 29 HOH A 349 SITE 1 AC2 15 ILE A 4 TRP A 5 ALA A 6 ILE A 19 SITE 2 AC2 15 ASP A 26 PHE A 30 LYS A 31 LEU A 49 SITE 3 AC2 15 ARG A 59 ILE A 94 TYR A 100 TYR A 157 SITE 4 AC2 15 NAP A 201 HOH A 321 HOH A 332 SITE 1 AC3 2 TRP A 21 VAL A 23 SITE 1 AC4 26 TRP B 5 ALA B 6 ILE B 13 GLY B 17 SITE 2 AC4 26 ASP B 18 ILE B 19 GLY B 42 ARG B 43 SITE 3 AC4 26 ARG B 44 THR B 45 LEU B 64 SER B 65 SITE 4 AC4 26 ARG B 66 GLN B 67 GLY B 79 ILE B 94 SITE 5 AC4 26 GLY B 95 GLY B 96 GLU B 97 GLN B 98 SITE 6 AC4 26 ILE B 99 TYR B 100 LEU B 102 MMV B 202 SITE 7 AC4 26 HOH B 304 HOH B 310 SITE 1 AC5 14 ILE B 4 TRP B 5 ALA B 6 ILE B 19 SITE 2 AC5 14 ASP B 26 PHE B 30 LYS B 31 LEU B 49 SITE 3 AC5 14 ARG B 59 ILE B 94 TYR B 100 TYR B 157 SITE 4 AC5 14 NAP B 201 HOH B 307 SITE 1 AC6 3 TRP B 21 VAL B 23 HOH B 309 CRYST1 62.100 66.250 86.120 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016103 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011612 0.00000