HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 19-SEP-20 7K69 TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE (DHFR) FROM MYCOBACTERIUM TITLE 2 ULCERANS AGY99 IN COMPLEX WITH NADP AND INHIBITOR SDDC-0001574 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ULCERANS (STRAIN AGY99); SOURCE 3 ORGANISM_TAXID: 362242; SOURCE 4 STRAIN: AGY99; SOURCE 5 GENE: DFRA, MUL_2179; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MYULA.01062.A.B12 KEYWDS SSGCID, SDDC, INHIBITOR, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 2 GENOMICS CENTER FOR INFECTIOUS DISEASE, OXIDOREDUCTASE, KEYWDS 3 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7K69 1 REMARK REVDAT 1 17-MAR-21 7K69 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,V.SANTHAKUMAR,C.WALPOLE,D.D.LORIMER, JRNL AUTH 2 P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE (DHFR) FROM JRNL TITL 2 MYCOBACTERIUM ULCERANS AGY99 IN COMPLEX WITH NADP AND JRNL TITL 3 INHIBITOR SDDC-0001574 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 20983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1000 - 3.9500 1.00 1360 157 0.1383 0.1489 REMARK 3 2 3.9400 - 3.1300 1.00 1330 149 0.1472 0.1768 REMARK 3 3 3.1300 - 2.7400 1.00 1341 141 0.1633 0.2251 REMARK 3 4 2.7400 - 2.4900 1.00 1329 148 0.1641 0.1723 REMARK 3 5 2.4900 - 2.3100 1.00 1315 159 0.1747 0.2148 REMARK 3 6 2.3100 - 2.1700 1.00 1293 164 0.1648 0.2058 REMARK 3 7 2.1700 - 2.0600 1.00 1315 160 0.1644 0.1785 REMARK 3 8 2.0600 - 1.9700 0.98 1301 139 0.1659 0.2048 REMARK 3 9 1.9700 - 1.9000 0.98 1315 137 0.1676 0.2121 REMARK 3 10 1.9000 - 1.8300 0.93 1186 157 0.1708 0.2024 REMARK 3 11 1.8300 - 1.7700 0.91 1207 134 0.1680 0.2150 REMARK 3 12 1.7700 - 1.7200 0.89 1204 121 0.1713 0.2454 REMARK 3 13 1.7200 - 1.6800 0.89 1156 120 0.1669 0.2037 REMARK 3 14 1.6800 - 1.6400 0.86 1164 128 0.1842 0.2209 REMARK 3 15 1.6400 - 1.6000 0.80 1050 103 0.2171 0.2611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.161 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1440 REMARK 3 ANGLE : 1.131 1996 REMARK 3 CHIRALITY : 0.059 218 REMARK 3 PLANARITY : 0.009 271 REMARK 3 DIHEDRAL : 21.293 554 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9026 0.9230 16.0967 REMARK 3 T TENSOR REMARK 3 T11: 0.0713 T22: 0.0402 REMARK 3 T33: 0.0937 T12: -0.0205 REMARK 3 T13: -0.0093 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.7456 L22: 3.1631 REMARK 3 L33: 2.2528 L12: 0.1726 REMARK 3 L13: -0.2049 L23: 0.1875 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.2014 S13: 0.0709 REMARK 3 S21: 0.1581 S22: -0.0143 S23: -0.1405 REMARK 3 S31: -0.2113 S32: 0.1072 S33: 0.0544 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1210 1.8969 13.6714 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.1110 REMARK 3 T33: 0.1279 T12: 0.0220 REMARK 3 T13: -0.0202 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.2034 L22: 2.0389 REMARK 3 L33: 1.7233 L12: -0.8270 REMARK 3 L13: -0.1410 L23: 1.0836 REMARK 3 S TENSOR REMARK 3 S11: -0.0806 S12: -0.2750 S13: 0.2918 REMARK 3 S21: -0.0544 S22: -0.1823 S23: 0.2698 REMARK 3 S31: -0.5716 S32: -0.3346 S33: 0.0148 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2273 -10.9565 13.0313 REMARK 3 T TENSOR REMARK 3 T11: 0.0600 T22: 0.0356 REMARK 3 T33: 0.0805 T12: -0.0168 REMARK 3 T13: 0.0126 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 2.8734 L22: 2.4711 REMARK 3 L33: 2.6854 L12: -1.1523 REMARK 3 L13: 0.5501 L23: 0.0696 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.1854 S13: -0.1183 REMARK 3 S21: 0.1391 S22: 0.0208 S23: 0.0831 REMARK 3 S31: 0.0381 S32: -0.1193 S33: 0.0442 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9923 -17.8981 6.0803 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.0798 REMARK 3 T33: 0.1445 T12: 0.0136 REMARK 3 T13: 0.0312 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 4.8511 L22: 3.0748 REMARK 3 L33: 2.0204 L12: -0.8765 REMARK 3 L13: -0.6422 L23: 0.7918 REMARK 3 S TENSOR REMARK 3 S11: -0.1010 S12: 0.2664 S13: -0.3751 REMARK 3 S21: -0.1804 S22: -0.0426 S23: -0.1858 REMARK 3 S31: 0.2508 S32: 0.0957 S33: 0.1016 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7413 -8.2324 0.2831 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.1761 REMARK 3 T33: 0.1782 T12: -0.0363 REMARK 3 T13: -0.0660 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 2.0061 L22: 5.5668 REMARK 3 L33: 2.5517 L12: -0.1331 REMARK 3 L13: -1.1960 L23: 2.6514 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: 0.4771 S13: -0.2694 REMARK 3 S21: -0.9550 S22: -0.2210 S23: 0.4912 REMARK 3 S31: -0.0144 S32: -0.5284 S33: 0.2079 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2572 0.9768 6.3961 REMARK 3 T TENSOR REMARK 3 T11: 0.0791 T22: 0.0493 REMARK 3 T33: 0.0890 T12: -0.0232 REMARK 3 T13: -0.0003 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.2980 L22: 2.5407 REMARK 3 L33: 1.7725 L12: -1.1923 REMARK 3 L13: -0.2815 L23: 0.1902 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: 0.1009 S13: 0.0334 REMARK 3 S21: -0.0787 S22: -0.1429 S23: -0.1130 REMARK 3 S31: -0.1751 S32: 0.0803 S33: 0.0711 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4383 1.5041 22.7451 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.2777 REMARK 3 T33: 0.2889 T12: -0.0042 REMARK 3 T13: -0.0515 T23: -0.1034 REMARK 3 L TENSOR REMARK 3 L11: 6.0676 L22: 4.3923 REMARK 3 L33: 0.9561 L12: -4.9975 REMARK 3 L13: -1.9773 L23: 1.9221 REMARK 3 S TENSOR REMARK 3 S11: -0.2079 S12: -0.9341 S13: 0.8559 REMARK 3 S21: 0.2307 S22: 0.6730 S23: -1.2363 REMARK 3 S31: -0.1443 S32: 0.3917 S33: -0.4784 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5250 8.0193 3.5358 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1273 REMARK 3 T33: 0.1563 T12: -0.0367 REMARK 3 T13: 0.0305 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 0.0687 L22: 1.1297 REMARK 3 L33: 4.1609 L12: -0.1578 REMARK 3 L13: 0.5225 L23: -0.7611 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: 0.1222 S13: 0.2457 REMARK 3 S21: -0.0538 S22: -0.1721 S23: -0.2909 REMARK 3 S31: -0.5498 S32: 0.4096 S33: 0.0687 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4775 11.6552 12.2604 REMARK 3 T TENSOR REMARK 3 T11: 0.2614 T22: 0.0847 REMARK 3 T33: 0.1355 T12: 0.0095 REMARK 3 T13: -0.0019 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.7259 L22: 0.9178 REMARK 3 L33: 5.5058 L12: -0.4745 REMARK 3 L13: -2.5066 L23: 1.2545 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: 0.0211 S13: 0.1334 REMARK 3 S21: 0.1952 S22: -0.0861 S23: -0.1392 REMARK 3 S31: -0.2547 S32: -0.1960 S33: -0.0198 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9218 10.6480 10.3240 REMARK 3 T TENSOR REMARK 3 T11: 0.6437 T22: 0.7452 REMARK 3 T33: 0.6231 T12: -0.0359 REMARK 3 T13: -0.0589 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: -5.7538 REMARK 3 L13: -5.0003 L23: 2.0000 REMARK 3 S TENSOR REMARK 3 S11: 1.1849 S12: -0.4018 S13: 0.6048 REMARK 3 S21: 5.0488 S22: -1.3458 S23: -0.6720 REMARK 3 S31: 0.5902 S32: 0.6748 S33: 0.1341 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 6.326 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.21 REMARK 200 R MERGE FOR SHELL (I) : 0.22500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NAD AND P218-BOUND STRUCTURE, PDB ENTRY 6UWW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS SCREEN, CONDITION D2: 112.5% REMARK 280 W/V PEG 1000, 12.5% W/V PEG 3350, 12.5% V/V MPD: 20MM OF EACH REMARK 280 SODIUM L-GLUTAMATE, DL-ALANINE, GLYCINE, DL-LYSINE HCL, DL- REMARK 280 SERINE: 100MM MES/IMIDAZOLE PH 6.5: MYULA.01062.A.B12.PS38539 REMARK 280 AND 15.75MG/ML + 2.5MM NADP AND 4MM SDDC COMPOUND SDDC-0001574: REMARK 280 TRAY: 317895H4: CRYO: DIRECT: PUCK: XHF8-3, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.53500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 437 O HOH A 473 2.03 REMARK 500 O HOH A 355 O HOH A 449 2.07 REMARK 500 O10 VY7 A 202 O HOH A 301 2.11 REMARK 500 O HOH A 302 O HOH A 468 2.12 REMARK 500 O HOH A 436 O HOH A 487 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 23 41.96 -86.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VY7 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYULA.01062.A.B12 RELATED DB: TARGETTRACK DBREF 7K69 A 1 165 UNP A0PQG8 A0PQG8_MYCUA 1 165 SEQADV 7K69 MET A -7 UNP A0PQG8 INITIATING METHIONINE SEQADV 7K69 ALA A -6 UNP A0PQG8 EXPRESSION TAG SEQADV 7K69 HIS A -5 UNP A0PQG8 EXPRESSION TAG SEQADV 7K69 HIS A -4 UNP A0PQG8 EXPRESSION TAG SEQADV 7K69 HIS A -3 UNP A0PQG8 EXPRESSION TAG SEQADV 7K69 HIS A -2 UNP A0PQG8 EXPRESSION TAG SEQADV 7K69 HIS A -1 UNP A0PQG8 EXPRESSION TAG SEQADV 7K69 HIS A 0 UNP A0PQG8 EXPRESSION TAG SEQADV 7K69 ALA A 96 UNP A0PQG8 GLU 96 ENGINEERED MUTATION SEQRES 1 A 173 MET ALA HIS HIS HIS HIS HIS HIS MET THR SER VAL GLY SEQRES 2 A 173 LEU ILE TRP ALA GLN SER THR SER GLY VAL ILE GLY ARG SEQRES 3 A 173 ASP GLY GLY ILE PRO TRP ARG LEU PRO GLU ASP LEU ALA SEQRES 4 A 173 HIS PHE LYS ARG LEU THR MET GLY HIS THR VAL VAL MET SEQRES 5 A 173 GLY ARG ARG THR TRP ASP SER LEU PRO ALA ALA HIS ARG SEQRES 6 A 173 PRO LEU PRO GLY ARG ARG ASN VAL VAL VAL THR ARG GLN SEQRES 7 A 173 THR GLY LEU VAL ALA HIS GLY ALA GLN VAL VAL GLY SER SEQRES 8 A 173 LEU GLU GLN ALA LEU CYS PRO ALA GLU PRO ASP ALA ALA SEQRES 9 A 173 THR TRP VAL ILE GLY GLY ALA GLN ILE TYR ALA LEU ALA SEQRES 10 A 173 LEU PRO LEU ALA ASN ARG CYS GLU VAL THR GLU VAL ASP SEQRES 11 A 173 VAL ASP LEU PRO PRO GLU ASP GLU ASP ALA LEU ALA PRO SEQRES 12 A 173 VAL LEU ASP GLN THR TRP ALA GLY THR SER GLY GLU TRP SEQRES 13 A 173 LEU VAL SER ARG SER GLY LEU ARG TYR ARG MET HIS SER SEQRES 14 A 173 TYR ARG ARG LEU HET NAP A 201 48 HET VY7 A 202 60 HET SER A 203 7 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM VY7 1-{2-[2-(2,4-DIAMINO-5,7-DIHYDRO-6H-PYRROLO[3,4- HETNAM 2 VY7 D]PYRIMIDIN-6-YL)-2-OXOETHOXY]PHENYL}PIPERIDINE-4- HETNAM 3 VY7 CARBOXYLIC ACID HETNAM SER SERINE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 VY7 C20 H24 N6 O4 FORMUL 4 SER C3 H7 N O3 FORMUL 5 HOH *218(H2 O) HELIX 1 AA1 LEU A 26 MET A 38 1 13 HELIX 2 AA2 ARG A 46 LEU A 52 1 7 HELIX 3 AA3 PRO A 53 ARG A 57 5 5 HELIX 4 AA4 SER A 83 LEU A 88 1 6 HELIX 5 AA5 GLY A 102 LEU A 110 1 9 HELIX 6 AA6 PRO A 111 ALA A 113 5 3 SHEET 1 AA1 8 GLN A 79 VAL A 81 0 SHEET 2 AA1 8 ARG A 63 VAL A 67 1 N VAL A 66 O GLN A 79 SHEET 3 AA1 8 THR A 41 GLY A 45 1 N VAL A 42 O ARG A 63 SHEET 4 AA1 8 THR A 97 VAL A 99 1 O TRP A 98 N THR A 41 SHEET 5 AA1 8 VAL A 4 SER A 11 1 N GLY A 5 O VAL A 99 SHEET 6 AA1 8 ARG A 115 ASP A 122 1 O THR A 119 N GLN A 10 SHEET 7 AA1 8 ARG A 156 ARG A 164 -1 O HIS A 160 N VAL A 118 SHEET 8 AA1 8 TRP A 141 SER A 145 -1 N ALA A 142 O ARG A 163 SHEET 1 AA2 8 GLN A 79 VAL A 81 0 SHEET 2 AA2 8 ARG A 63 VAL A 67 1 N VAL A 66 O GLN A 79 SHEET 3 AA2 8 THR A 41 GLY A 45 1 N VAL A 42 O ARG A 63 SHEET 4 AA2 8 THR A 97 VAL A 99 1 O TRP A 98 N THR A 41 SHEET 5 AA2 8 VAL A 4 SER A 11 1 N GLY A 5 O VAL A 99 SHEET 6 AA2 8 ARG A 115 ASP A 122 1 O THR A 119 N GLN A 10 SHEET 7 AA2 8 ARG A 156 ARG A 164 -1 O HIS A 160 N VAL A 118 SHEET 8 AA2 8 LEU A 149 VAL A 150 -1 N LEU A 149 O TYR A 157 SHEET 1 AA3 2 VAL A 15 GLY A 17 0 SHEET 2 AA3 2 ALA A 132 LEU A 133 -1 O ALA A 132 N ILE A 16 CISPEP 1 ARG A 57 PRO A 58 0 8.12 CISPEP 2 GLY A 101 GLY A 102 0 6.21 SITE 1 AC1 37 TRP A 8 ALA A 9 ILE A 16 GLY A 17 SITE 2 AC1 37 ARG A 18 GLY A 20 GLY A 21 ILE A 22 SITE 3 AC1 37 GLY A 45 ARG A 46 ARG A 47 THR A 48 SITE 4 AC1 37 VAL A 67 THR A 68 ARG A 69 GLN A 70 SITE 5 AC1 37 GLY A 82 ILE A 100 GLY A 102 ALA A 103 SITE 6 AC1 37 GLN A 104 ILE A 105 TYR A 106 LEU A 108 SITE 7 AC1 37 VY7 A 202 HOH A 322 HOH A 328 HOH A 343 SITE 8 AC1 37 HOH A 345 HOH A 350 HOH A 367 HOH A 372 SITE 9 AC1 37 HOH A 386 HOH A 389 HOH A 397 HOH A 406 SITE 10 AC1 37 HOH A 412 SITE 1 AC2 22 ILE A 7 TRP A 8 ALA A 9 ILE A 22 SITE 2 AC2 22 LEU A 26 ASP A 29 LEU A 30 PHE A 33 SITE 3 AC2 22 LYS A 34 PRO A 53 HIS A 56 LEU A 59 SITE 4 AC2 22 ARG A 62 ILE A 100 TYR A 106 NAP A 201 SITE 5 AC2 22 HOH A 301 HOH A 304 HOH A 314 HOH A 327 SITE 6 AC2 22 HOH A 380 HOH A 401 SITE 1 AC3 3 GLU A 120 HIS A 160 TYR A 162 CRYST1 28.710 67.070 44.110 90.00 91.34 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034831 0.000000 0.000813 0.00000 SCALE2 0.000000 0.014910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022677 0.00000