HEADER APOPTOSIS 22-SEP-20 7K7A TITLE TRANSMEMBRANE STRUCTURE OF TNFR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 1A; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: TUMOR NECROSIS FACTOR RECEPTOR 1,TNF-R1,TUMOR NECROSIS COMPND 5 FACTOR RECEPTOR TYPE I,TNFR-I,P55,P60; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNFRSF1A, TNFAR, TNFR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSMEMBRANE HELIX, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR L.ZHAO,J.CHOU REVDAT 4 15-MAY-24 7K7A 1 REMARK REVDAT 3 14-JUN-23 7K7A 1 REMARK REVDAT 2 25-NOV-20 7K7A 1 JRNL REVDAT 1 30-SEP-20 7K7A 0 JRNL AUTH L.ZHAO,Q.FU,L.PAN,A.PIAI,J.J.CHOU JRNL TITL THE DIVERSITY AND SIMILARITY OF TRANSMEMBRANE TRIMERIZATION JRNL TITL 2 OF TNF RECEPTORS. JRNL REF FRONT CELL DEV BIOL V. 8 69684 2020 JRNL REFN ESSN 2296-634X JRNL PMID 33163490 JRNL DOI 10.3389/FCELL.2020.569684 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251977. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-100% 13C; U-100% 15N; REMARK 210 U-80% 2H] PROTEIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM DMPC, 100 MM REMARK 210 DHPC, 90% H2O/10% D2O; 0.4 MM [U- REMARK 210 100% 13C] PROTEIN A, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM DMPC, REMARK 210 100 MM DHPC, 0.4 MM [U-100% 2H; REMARK 210 U-100% 15N] PROTEIN B, 90% H2O/ REMARK 210 10% D2O; 0.7 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM DMPC, 100 MM REMARK 210 DHPC, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HNCACO; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 FOR METHYLS; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, NMRPIPE, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 211 33.97 -93.14 REMARK 500 1 THR B 210 -41.85 -152.17 REMARK 500 1 GLN C 237 97.68 -174.81 REMARK 500 2 THR A 211 50.68 -115.03 REMARK 500 2 THR B 211 54.50 -103.06 REMARK 500 2 GLN B 237 -91.42 -80.50 REMARK 500 2 THR C 211 52.33 -103.80 REMARK 500 3 THR B 210 99.49 53.47 REMARK 500 3 THR C 211 47.28 -95.75 REMARK 500 3 GLN C 237 88.13 57.01 REMARK 500 4 THR C 211 33.93 -152.88 REMARK 500 4 GLN C 237 93.07 -172.91 REMARK 500 5 GLN B 237 87.21 -163.94 REMARK 500 6 THR A 211 45.52 -109.09 REMARK 500 6 THR B 210 98.63 54.57 REMARK 500 6 GLN B 237 86.55 56.55 REMARK 500 6 THR C 210 105.23 -164.48 REMARK 500 6 GLN C 237 61.39 -111.38 REMARK 500 7 THR A 211 57.74 -114.38 REMARK 500 7 GLN B 237 58.76 -107.55 REMARK 500 7 GLN C 237 88.14 -165.91 REMARK 500 8 GLN A 237 81.76 -151.14 REMARK 500 8 GLN B 237 87.35 55.33 REMARK 500 8 GLN C 237 88.61 58.86 REMARK 500 9 THR A 210 92.59 46.39 REMARK 500 9 THR C 211 52.13 -143.96 REMARK 500 9 GLN C 237 92.20 -175.68 REMARK 500 10 GLN A 237 79.28 -152.19 REMARK 500 10 THR B 211 47.37 -148.57 REMARK 500 10 THR C 211 48.73 -150.54 REMARK 500 11 THR A 211 50.82 -109.45 REMARK 500 11 GLN A 237 39.00 -155.73 REMARK 500 11 THR B 211 49.26 -98.88 REMARK 500 11 GLN B 237 22.09 47.80 REMARK 500 12 GLN B 237 40.41 -141.55 REMARK 500 12 THR C 210 99.07 41.26 REMARK 500 12 GLN C 237 88.79 -164.86 REMARK 500 13 THR A 211 59.51 -97.96 REMARK 500 13 GLN A 237 82.81 -156.67 REMARK 500 13 GLN B 237 55.89 -102.50 REMARK 500 14 GLN B 237 44.66 -90.14 REMARK 500 15 THR C 210 -67.23 -97.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30799 RELATED DB: BMRB REMARK 900 TRANSMEMBRANE STRUCTURE OF TNFR1 DBREF 7K7A A 209 238 UNP P19438 TNR1A_HUMAN 209 238 DBREF 7K7A B 209 238 UNP P19438 TNR1A_HUMAN 209 238 DBREF 7K7A C 209 238 UNP P19438 TNR1A_HUMAN 209 238 SEQADV 7K7A ALA A 223 UNP P19438 CYS 223 ENGINEERED MUTATION SEQADV 7K7A ALA A 233 UNP P19438 MET 233 ENGINEERED MUTATION SEQADV 7K7A ALA B 223 UNP P19438 CYS 223 ENGINEERED MUTATION SEQADV 7K7A ALA B 233 UNP P19438 MET 233 ENGINEERED MUTATION SEQADV 7K7A ALA C 223 UNP P19438 CYS 223 ENGINEERED MUTATION SEQADV 7K7A ALA C 233 UNP P19438 MET 233 ENGINEERED MUTATION SEQRES 1 A 30 GLY THR THR VAL LEU LEU PRO LEU VAL ILE PHE PHE GLY SEQRES 2 A 30 LEU ALA LEU LEU SER LEU LEU PHE ILE GLY LEU ALA TYR SEQRES 3 A 30 ARG TYR GLN ARG SEQRES 1 B 30 GLY THR THR VAL LEU LEU PRO LEU VAL ILE PHE PHE GLY SEQRES 2 B 30 LEU ALA LEU LEU SER LEU LEU PHE ILE GLY LEU ALA TYR SEQRES 3 B 30 ARG TYR GLN ARG SEQRES 1 C 30 GLY THR THR VAL LEU LEU PRO LEU VAL ILE PHE PHE GLY SEQRES 2 C 30 LEU ALA LEU LEU SER LEU LEU PHE ILE GLY LEU ALA TYR SEQRES 3 C 30 ARG TYR GLN ARG HELIX 1 AA1 VAL A 212 GLN A 237 1 26 HELIX 2 AA2 VAL B 212 ARG B 238 1 27 HELIX 3 AA3 VAL C 212 TYR C 236 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1