data_7K7F # _entry.id 7K7F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.341 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7K7F WWPDB D_1000251904 BMRB 30800 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution Structure of the Corynebacterium diphtheriae SpaA Pilin-Signal Peptide Complex' _pdbx_database_related.db_id 30800 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7K7F _pdbx_database_status.recvd_initial_deposition_date 2020-09-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'McConnell, S.A.' 1 0000-0001-9997-5278 'Clubb, R.T.' 2 0000-0001-5718-3985 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 118 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Sortase-assembled pili in Corynebacterium diphtheriae are built using a latch mechanism.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2019649118 _citation.pdbx_database_id_PubMed 33723052 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McConnell, S.A.' 1 0000-0001-9997-5278 primary 'McAllister, R.A.' 2 ? primary 'Amer, B.R.' 3 0000-0001-6564-3347 primary 'Mahoney, B.J.' 4 0000-0003-4323-9276 primary 'Sue, C.K.' 5 ? primary 'Chang, C.' 6 0000-0001-6127-3086 primary 'Ton-That, H.' 7 ? primary 'Clubb, R.T.' 8 0000-0001-5718-3985 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative surface-anchored fimbrial subunit' 15399.396 1 ? ? 'N-terminal domain, residues 53-195' ? 2 polymer syn 'SpaA sorting signal peptide' 1090.249 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ERTSIAVHALMGLPTGQPANGTKLDSIGLPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNGHPTDKVTKVATK KTEGGVAKFDNLTPALYLVVQELNGAEAVVRSQPFLVAAPQTNPTGDGWLQDVHVYPKHQALS ; ;ERTSIAVHALMGLPTGQPANGTKLDSIGLPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNGHPTDKVTKVATK KTEGGVAKFDNLTPALYLVVQELNGAEAVVRSQPFLVAAPQTNPTGDGWLQDVHVYPKHQALS ; A ? 2 'polypeptide(L)' no no KNAGFELPLT KNAGFELPLT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ARG n 1 3 THR n 1 4 SER n 1 5 ILE n 1 6 ALA n 1 7 VAL n 1 8 HIS n 1 9 ALA n 1 10 LEU n 1 11 MET n 1 12 GLY n 1 13 LEU n 1 14 PRO n 1 15 THR n 1 16 GLY n 1 17 GLN n 1 18 PRO n 1 19 ALA n 1 20 ASN n 1 21 GLY n 1 22 THR n 1 23 LYS n 1 24 LEU n 1 25 ASP n 1 26 SER n 1 27 ILE n 1 28 GLY n 1 29 LEU n 1 30 PRO n 1 31 LYS n 1 32 VAL n 1 33 ASP n 1 34 GLY n 1 35 MET n 1 36 SER n 1 37 PHE n 1 38 THR n 1 39 LEU n 1 40 TYR n 1 41 ARG n 1 42 VAL n 1 43 ASN n 1 44 GLU n 1 45 ILE n 1 46 ASP n 1 47 LEU n 1 48 THR n 1 49 THR n 1 50 GLN n 1 51 ALA n 1 52 GLY n 1 53 TRP n 1 54 ASP n 1 55 ALA n 1 56 ALA n 1 57 SER n 1 58 LYS n 1 59 ILE n 1 60 LYS n 1 61 LEU n 1 62 GLU n 1 63 GLU n 1 64 LEU n 1 65 TYR n 1 66 THR n 1 67 ASN n 1 68 GLY n 1 69 HIS n 1 70 PRO n 1 71 THR n 1 72 ASP n 1 73 LYS n 1 74 VAL n 1 75 THR n 1 76 LYS n 1 77 VAL n 1 78 ALA n 1 79 THR n 1 80 LYS n 1 81 LYS n 1 82 THR n 1 83 GLU n 1 84 GLY n 1 85 GLY n 1 86 VAL n 1 87 ALA n 1 88 LYS n 1 89 PHE n 1 90 ASP n 1 91 ASN n 1 92 LEU n 1 93 THR n 1 94 PRO n 1 95 ALA n 1 96 LEU n 1 97 TYR n 1 98 LEU n 1 99 VAL n 1 100 VAL n 1 101 GLN n 1 102 GLU n 1 103 LEU n 1 104 ASN n 1 105 GLY n 1 106 ALA n 1 107 GLU n 1 108 ALA n 1 109 VAL n 1 110 VAL n 1 111 ARG n 1 112 SER n 1 113 GLN n 1 114 PRO n 1 115 PHE n 1 116 LEU n 1 117 VAL n 1 118 ALA n 1 119 ALA n 1 120 PRO n 1 121 GLN n 1 122 THR n 1 123 ASN n 1 124 PRO n 1 125 THR n 1 126 GLY n 1 127 ASP n 1 128 GLY n 1 129 TRP n 1 130 LEU n 1 131 GLN n 1 132 ASP n 1 133 VAL n 1 134 HIS n 1 135 VAL n 1 136 TYR n 1 137 PRO n 1 138 LYS n 1 139 HIS n 1 140 GLN n 1 141 ALA n 1 142 LEU n 1 143 SER n 2 1 LYS n 2 2 ASN n 2 3 ALA n 2 4 GLY n 2 5 PHE n 2 6 GLU n 2 7 LEU n 2 8 PRO n 2 9 LEU n 2 10 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 143 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene DIP2013 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 700971 / NCTC 13129 / Biotype gravis' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 257309 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSUMO _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'Corynebacterium diphtheriae' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1717 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q6NF81_CORDI Q6NF81 ? 1 ;ERTSIAVHALMGLPTGQPANGTKLDSIGLPKVDGMSFTLYRVNEIDLTTQAGWDAASKIKLEELYTNGHPTDKVTKVATK KTEGGVAKFDNLTPALYLVVQELNGAEAVVRSQPFLVAAPQTNPTGDGWLQDVHVYPKHQALS ; 53 2 PDB 7K7F 7K7F ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7K7F A 1 ? 143 ? Q6NF81 53 ? 195 ? 53 195 2 2 7K7F B 1 ? 10 ? 7K7F 485 ? 494 ? 485 494 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 3D_15N-separated_NOESY 2 isotropic 2 2 1 '3D_(F1)_13C,15N-filtered_(F2)_15N-edited NOESY-HSQC' 1 isotropic 3 1 1 '2D 1H-15N HSQC' 1 isotropic 4 2 2 '2D 1H-13C HSQC' 1 isotropic 5 2 2 '2D 1H-13C HSQC aromatic' 1 isotropic 6 1 1 '3D HNCACB' 1 isotropic 7 1 1 '1H-15N heteronoe' 1 isotropic 8 1 1 '3D CBCA(CO)NH' 1 isotropic 9 1 1 'T2/R2 relaxation' 1 isotropic 10 1 1 'T1/R1 relaxation' 1 isotropic 11 1 1 '3D HN(CA)CO' 1 isotropic 12 1 1 '3D HNCA' 1 isotropic 13 1 1 '3D HNCO' 1 isotropic 14 2 2 '3D HCCH-COSY' 1 isotropic 17 1 1 '3D HNHA' 1 isotropic 18 1 1 '3D HBHA(CO)NH' 2 isotropic 19 1 1 '3D 1H-15N TOCSY' 2 isotropic 20 1 1 '3D H(CCO)NH' 1 isotropic 21 2 2 '2D (F1,F2) 13C-filtered NOESY' 1 isotropic 22 2 2 '2D (F1) 13C,15N-filtered TOCSY' 1 isotropic 24 2 2 3D_13C-separated_NOESY_aliphatic_D2O 1 isotropic 23 1 2 '3D_(F1)_13C,15N-filtered_(F2)_13C-edited NOESY-HSQC' 1 isotropic 25 1 2 3D_13C-separated_NOESY_aromatic_D2O 1 isotropic 26 1 1 3D_13C-separated_NOESY_aliphatic_H2O 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 ? ambient 6.0 '100mM NaCl' ? ? mM Cond1 ? pH ? ? K 2 298 ? ambient 6.0 '100mM NaCl' ? ? mM Cond2 ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;1.2 mM [U-13C; U-15N] SpaA backbone pilin for protein, 1.2 mM SpaA sorting signal for peptide, 50 mM NaH2PO4, 100 mM NaCl, 0.01 % NaN3, 92% H2O, 8% D2O ; '92% H2O, 8% D2O' 'NSpaA-signal peptide (H2O)' solution ? 2 ;1.2 mM [U-13C; U-15N] SpaA backbone pilin for protein, 1.2 mM SpaA sorting signal for peptide, 50 mM NaH2PO4, 100 mM NaCl, 0.01 % NaN3, 100% D2O ; '100% D2O' 'NSpaA-signal peptide (D2O)' solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III HD' ? Bruker 600 ? 2 'AVANCE NEO' ? Bruker 800 ? # _pdbx_nmr_refine.entry_id 7K7F _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'NOE restraints refined in XIPP, structures were calculated with a simulated annealing protocol using XPLOR-NIH' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 7K7F _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7K7F _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement 'X-PLOR NIH' 2.37 'Schwieters, Kuszewski, Tjandra and Clore' 2 'structure calculation' 'X-PLOR NIH' 2.37 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' Xipp 1.19 'Dan Garrett' 4 'peak picking' Xipp 1.19 'Dan Garrett' 5 'structure calculation' UNIO ? 'Torsten Herrmann' 6 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 7 collection TopSpin ? 'Bruker Biospin' 8 'data analysis' NMRFAM-SPARKY ? 'National Magnetic Resonance Facility at Madison (Wisconsin)' 9 'peak picking' CARA ? 'Keller and Wuthrich' 10 'geometry optimization' TALOS-N ? 'Cornilescu, Delaglio and Bax' 11 refinement MOLMOL ? 'Koradi, Billeter and Wuthrich' 12 refinement 'PROCHECK / PROCHECK-NMR' ? 'Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7K7F _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7K7F _struct.title 'Solution Structure of the Corynebacterium diphtheriae SpaA Pilin-Signal Peptide Complex' _struct.pdbx_descriptor 'Putative surface-anchored fimbrial subunit, SpaA sorting signal peptide' _struct.pdbx_model_details 'SpaA backbone pilin isopeptide complex with sorting signal peptide' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7K7F _struct_keywords.text 'pili, backbone pilin, sortase, lysine isopeptide bond, Gram-positive bacteria, CELL ADHESION' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 49 ? LYS A 58 ? THR A 101 LYS A 110 1 ? 10 HELX_P HELX_P2 AA2 LYS A 60 ? TYR A 65 ? LYS A 112 TYR A 117 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 138 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id THR _struct_conn.ptnr2_label_seq_id 10 _struct_conn.ptnr2_label_atom_id C _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 190 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id THR _struct_conn.ptnr2_auth_seq_id 494 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order sing _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 1 -0.81 2 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 2 -1.51 3 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 3 -0.83 4 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 4 -1.96 5 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 5 -1.35 6 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 6 -0.75 7 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 7 -1.29 8 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 8 0.05 9 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 9 -0.68 10 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 10 -1.13 11 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 11 0.26 12 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 12 -0.42 13 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 13 -1.19 14 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 14 -0.66 15 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 15 -0.90 16 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 16 -1.43 17 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 17 0.08 18 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 18 -1.36 19 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 19 -1.11 20 ALA 119 A . ? ALA 171 A PRO 120 A ? PRO 172 A 20 0.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 4 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 86 ? LEU A 92 ? VAL A 138 LEU A 144 AA1 2 THR A 3 ? HIS A 8 ? THR A 55 HIS A 60 AA1 3 ASP A 132 ? VAL A 135 ? ASP A 184 VAL A 187 AA2 1 LEU A 10 ? MET A 11 ? LEU A 62 MET A 63 AA2 2 LYS A 138 ? ALA A 141 ? LYS A 190 ALA A 193 AA2 3 VAL A 109 ? VAL A 110 ? VAL A 161 VAL A 162 AA3 1 VAL A 74 ? THR A 82 ? VAL A 126 THR A 134 AA3 2 MET A 35 ? VAL A 42 ? MET A 87 VAL A 94 AA3 3 ALA A 95 ? GLN A 101 ? ALA A 147 GLN A 153 AA3 4 PHE A 115 ? ALA A 119 ? PHE A 167 ALA A 171 AA4 1 GLN A 121 ? THR A 122 ? GLN A 173 THR A 174 AA4 2 TRP A 129 ? LEU A 130 ? TRP A 181 LEU A 182 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ALA A 87 ? O ALA A 139 N VAL A 7 ? N VAL A 59 AA1 2 3 N HIS A 8 ? N HIS A 60 O VAL A 135 ? O VAL A 187 AA2 1 2 N LEU A 10 ? N LEU A 62 O HIS A 139 ? O HIS A 191 AA2 2 3 O GLN A 140 ? O GLN A 192 N VAL A 110 ? N VAL A 162 AA3 1 2 O THR A 75 ? O THR A 127 N ARG A 41 ? N ARG A 93 AA3 2 3 N THR A 38 ? N THR A 90 O VAL A 100 ? O VAL A 152 AA3 3 4 N ALA A 95 ? N ALA A 147 O ALA A 119 ? O ALA A 171 AA4 1 2 N GLN A 121 ? N GLN A 173 O LEU A 130 ? O LEU A 182 # _atom_sites.entry_id 7K7F _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 53 53 GLU GLU A . n A 1 2 ARG 2 54 54 ARG ARG A . n A 1 3 THR 3 55 55 THR THR A . n A 1 4 SER 4 56 56 SER SER A . n A 1 5 ILE 5 57 57 ILE ILE A . n A 1 6 ALA 6 58 58 ALA ALA A . n A 1 7 VAL 7 59 59 VAL VAL A . n A 1 8 HIS 8 60 60 HIS HIS A . n A 1 9 ALA 9 61 61 ALA ALA A . n A 1 10 LEU 10 62 62 LEU LEU A . n A 1 11 MET 11 63 63 MET MET A . n A 1 12 GLY 12 64 64 GLY GLY A . n A 1 13 LEU 13 65 65 LEU LEU A . n A 1 14 PRO 14 66 66 PRO PRO A . n A 1 15 THR 15 67 67 THR THR A . n A 1 16 GLY 16 68 68 GLY GLY A . n A 1 17 GLN 17 69 69 GLN GLN A . n A 1 18 PRO 18 70 70 PRO PRO A . n A 1 19 ALA 19 71 71 ALA ALA A . n A 1 20 ASN 20 72 72 ASN ASN A . n A 1 21 GLY 21 73 73 GLY GLY A . n A 1 22 THR 22 74 74 THR THR A . n A 1 23 LYS 23 75 75 LYS LYS A . n A 1 24 LEU 24 76 76 LEU LEU A . n A 1 25 ASP 25 77 77 ASP ASP A . n A 1 26 SER 26 78 78 SER SER A . n A 1 27 ILE 27 79 79 ILE ILE A . n A 1 28 GLY 28 80 80 GLY GLY A . n A 1 29 LEU 29 81 81 LEU LEU A . n A 1 30 PRO 30 82 82 PRO PRO A . n A 1 31 LYS 31 83 83 LYS LYS A . n A 1 32 VAL 32 84 84 VAL VAL A . n A 1 33 ASP 33 85 85 ASP ASP A . n A 1 34 GLY 34 86 86 GLY GLY A . n A 1 35 MET 35 87 87 MET MET A . n A 1 36 SER 36 88 88 SER SER A . n A 1 37 PHE 37 89 89 PHE PHE A . n A 1 38 THR 38 90 90 THR THR A . n A 1 39 LEU 39 91 91 LEU LEU A . n A 1 40 TYR 40 92 92 TYR TYR A . n A 1 41 ARG 41 93 93 ARG ARG A . n A 1 42 VAL 42 94 94 VAL VAL A . n A 1 43 ASN 43 95 95 ASN ASN A . n A 1 44 GLU 44 96 96 GLU GLU A . n A 1 45 ILE 45 97 97 ILE ILE A . n A 1 46 ASP 46 98 98 ASP ASP A . n A 1 47 LEU 47 99 99 LEU LEU A . n A 1 48 THR 48 100 100 THR THR A . n A 1 49 THR 49 101 101 THR THR A . n A 1 50 GLN 50 102 102 GLN GLN A . n A 1 51 ALA 51 103 103 ALA ALA A . n A 1 52 GLY 52 104 104 GLY GLY A . n A 1 53 TRP 53 105 105 TRP TRP A . n A 1 54 ASP 54 106 106 ASP ASP A . n A 1 55 ALA 55 107 107 ALA ALA A . n A 1 56 ALA 56 108 108 ALA ALA A . n A 1 57 SER 57 109 109 SER SER A . n A 1 58 LYS 58 110 110 LYS LYS A . n A 1 59 ILE 59 111 111 ILE ILE A . n A 1 60 LYS 60 112 112 LYS LYS A . n A 1 61 LEU 61 113 113 LEU LEU A . n A 1 62 GLU 62 114 114 GLU GLU A . n A 1 63 GLU 63 115 115 GLU GLU A . n A 1 64 LEU 64 116 116 LEU LEU A . n A 1 65 TYR 65 117 117 TYR TYR A . n A 1 66 THR 66 118 118 THR THR A . n A 1 67 ASN 67 119 119 ASN ASN A . n A 1 68 GLY 68 120 120 GLY GLY A . n A 1 69 HIS 69 121 121 HIS HIS A . n A 1 70 PRO 70 122 122 PRO PRO A . n A 1 71 THR 71 123 123 THR THR A . n A 1 72 ASP 72 124 124 ASP ASP A . n A 1 73 LYS 73 125 125 LYS LYS A . n A 1 74 VAL 74 126 126 VAL VAL A . n A 1 75 THR 75 127 127 THR THR A . n A 1 76 LYS 76 128 128 LYS LYS A . n A 1 77 VAL 77 129 129 VAL VAL A . n A 1 78 ALA 78 130 130 ALA ALA A . n A 1 79 THR 79 131 131 THR THR A . n A 1 80 LYS 80 132 132 LYS LYS A . n A 1 81 LYS 81 133 133 LYS LYS A . n A 1 82 THR 82 134 134 THR THR A . n A 1 83 GLU 83 135 135 GLU GLU A . n A 1 84 GLY 84 136 136 GLY GLY A . n A 1 85 GLY 85 137 137 GLY GLY A . n A 1 86 VAL 86 138 138 VAL VAL A . n A 1 87 ALA 87 139 139 ALA ALA A . n A 1 88 LYS 88 140 140 LYS LYS A . n A 1 89 PHE 89 141 141 PHE PHE A . n A 1 90 ASP 90 142 142 ASP ASP A . n A 1 91 ASN 91 143 143 ASN ASN A . n A 1 92 LEU 92 144 144 LEU LEU A . n A 1 93 THR 93 145 145 THR THR A . n A 1 94 PRO 94 146 146 PRO PRO A . n A 1 95 ALA 95 147 147 ALA ALA A . n A 1 96 LEU 96 148 148 LEU LEU A . n A 1 97 TYR 97 149 149 TYR TYR A . n A 1 98 LEU 98 150 150 LEU LEU A . n A 1 99 VAL 99 151 151 VAL VAL A . n A 1 100 VAL 100 152 152 VAL VAL A . n A 1 101 GLN 101 153 153 GLN GLN A . n A 1 102 GLU 102 154 154 GLU GLU A . n A 1 103 LEU 103 155 155 LEU LEU A . n A 1 104 ASN 104 156 156 ASN ASN A . n A 1 105 GLY 105 157 157 GLY GLY A . n A 1 106 ALA 106 158 158 ALA ALA A . n A 1 107 GLU 107 159 159 GLU GLU A . n A 1 108 ALA 108 160 160 ALA ALA A . n A 1 109 VAL 109 161 161 VAL VAL A . n A 1 110 VAL 110 162 162 VAL VAL A . n A 1 111 ARG 111 163 163 ARG ARG A . n A 1 112 SER 112 164 164 SER SER A . n A 1 113 GLN 113 165 165 GLN GLN A . n A 1 114 PRO 114 166 166 PRO PRO A . n A 1 115 PHE 115 167 167 PHE PHE A . n A 1 116 LEU 116 168 168 LEU LEU A . n A 1 117 VAL 117 169 169 VAL VAL A . n A 1 118 ALA 118 170 170 ALA ALA A . n A 1 119 ALA 119 171 171 ALA ALA A . n A 1 120 PRO 120 172 172 PRO PRO A . n A 1 121 GLN 121 173 173 GLN GLN A . n A 1 122 THR 122 174 174 THR THR A . n A 1 123 ASN 123 175 175 ASN ASN A . n A 1 124 PRO 124 176 176 PRO PRO A . n A 1 125 THR 125 177 177 THR THR A . n A 1 126 GLY 126 178 178 GLY GLY A . n A 1 127 ASP 127 179 179 ASP ASP A . n A 1 128 GLY 128 180 180 GLY GLY A . n A 1 129 TRP 129 181 181 TRP TRP A . n A 1 130 LEU 130 182 182 LEU LEU A . n A 1 131 GLN 131 183 183 GLN GLN A . n A 1 132 ASP 132 184 184 ASP ASP A . n A 1 133 VAL 133 185 185 VAL VAL A . n A 1 134 HIS 134 186 186 HIS HIS A . n A 1 135 VAL 135 187 187 VAL VAL A . n A 1 136 TYR 136 188 188 TYR TYR A . n A 1 137 PRO 137 189 189 PRO PRO A . n A 1 138 LYS 138 190 190 LYS LYS A . n A 1 139 HIS 139 191 191 HIS HIS A . n A 1 140 GLN 140 192 192 GLN GLN A . n A 1 141 ALA 141 193 193 ALA ALA A . n A 1 142 LEU 142 194 194 LEU LEU A . n A 1 143 SER 143 195 195 SER SER A . n B 2 1 LYS 1 485 485 LYS LYS B . n B 2 2 ASN 2 486 486 ASN ASN B . n B 2 3 ALA 3 487 487 ALA ALA B . n B 2 4 GLY 4 488 488 GLY GLY B . n B 2 5 PHE 5 489 489 PHE PHE B . n B 2 6 GLU 6 490 490 GLU GLU B . n B 2 7 LEU 7 491 491 LEU LEU B . n B 2 8 PRO 8 492 492 PRO PRO B . n B 2 9 LEU 9 493 493 LEU LEU B . n B 2 10 THR 10 494 494 THR THR B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1390 ? 1 MORE -11 ? 1 'SSA (A^2)' 8980 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-03-10 2 'Structure model' 1 1 2021-04-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 2 'Structure model' '_citation_author.identifier_ORCID' 12 2 'Structure model' '_citation_author.name' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'SpaA backbone pilin for protein' 1.2 ? mM '[U-13C; U-15N]' 1 'SpaA sorting signal for peptide' 1.2 ? mM 'natural abundance' 1 NaH2PO4 50 ? mM 'natural abundance' 1 NaCl 100 ? mM 'natural abundance' 1 NaN3 0.01 ? % 'natural abundance' 2 'SpaA backbone pilin for protein' 1.2 ? mM '[U-13C; U-15N]' 2 'SpaA sorting signal for peptide' 1.2 ? mM 'natural abundance' 2 NaH2PO4 50 ? mM 'natural abundance' 2 NaCl 100 ? mM 'natural abundance' 2 NaN3 0.01 ? % 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 HD22 A ASN 175 ? ? H A ASP 179 ? ? 1.19 2 2 HE21 A GLN 102 ? ? HE1 A TRP 105 ? ? 1.28 3 2 H A ARG 93 ? ? O A THR 127 ? ? 1.60 4 6 HD22 A ASN 175 ? ? H A ASP 179 ? ? 1.17 5 7 H A ARG 93 ? ? O A THR 127 ? ? 1.56 6 8 HH A TYR 92 ? ? HZ2 A LYS 128 ? ? 1.28 7 9 HE22 A GLN 153 ? ? HG A SER 164 ? ? 1.33 8 11 H A ARG 93 ? ? O A THR 127 ? ? 1.53 9 13 HD22 A ASN 175 ? ? H A ASP 179 ? ? 1.17 10 14 HE22 A GLN 153 ? ? H A SER 164 ? ? 1.26 11 15 HD22 A ASN 175 ? ? H A ASP 179 ? ? 1.27 12 15 H A VAL 162 ? ? O A GLN 192 ? ? 1.59 13 16 H3 B LYS 485 ? ? H B ASN 486 ? ? 1.27 14 16 HD22 A ASN 175 ? ? H A ASP 179 ? ? 1.29 15 18 O A LYS 112 ? ? H A GLU 115 ? ? 1.55 16 19 HG A SER 88 ? ? HZ2 A LYS 133 ? ? 1.33 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 67 ? ? -101.68 73.77 2 1 GLU A 96 ? ? 66.35 -2.04 3 1 THR A 118 ? ? -126.55 -53.10 4 1 THR A 123 ? ? -108.10 -166.68 5 1 ALA A 147 ? ? -179.48 -133.45 6 1 ASN B 486 ? ? 56.04 -90.24 7 1 PHE B 489 ? ? -133.14 -84.41 8 1 GLU B 490 ? ? -161.36 85.97 9 2 THR A 67 ? ? -104.08 75.11 10 2 GLU A 96 ? ? 55.82 10.82 11 2 THR A 118 ? ? -135.77 -47.21 12 2 THR A 123 ? ? -104.11 -168.17 13 2 ALA A 147 ? ? -178.52 -133.35 14 2 PHE B 489 ? ? -122.47 -79.80 15 2 GLU B 490 ? ? -159.37 85.72 16 3 THR A 67 ? ? -106.06 76.70 17 3 GLU A 96 ? ? 66.72 -3.28 18 3 LEU A 116 ? ? -107.79 -60.17 19 3 THR A 118 ? ? -141.16 -50.90 20 3 THR A 123 ? ? -107.94 -167.79 21 3 VAL A 129 ? ? -102.80 -61.98 22 3 ALA A 147 ? ? -174.98 -133.15 23 3 PHE B 489 ? ? -140.64 -77.06 24 3 GLU B 490 ? ? -167.62 88.78 25 4 ARG A 54 ? ? -113.72 -169.59 26 4 GLU A 96 ? ? 69.99 -2.69 27 4 THR A 118 ? ? -126.22 -56.85 28 4 THR A 123 ? ? -106.39 -167.60 29 4 ALA A 147 ? ? -178.50 -132.46 30 4 ASN A 156 ? ? -38.08 142.53 31 4 PHE B 489 ? ? -104.46 -82.96 32 4 GLU B 490 ? ? -157.70 84.87 33 5 THR A 67 ? ? -104.00 70.61 34 5 GLU A 96 ? ? 67.86 -2.50 35 5 LEU A 99 ? ? -83.06 33.37 36 5 LEU A 116 ? ? -104.63 -60.32 37 5 THR A 118 ? ? -139.61 -50.70 38 5 THR A 123 ? ? -108.84 -166.76 39 5 ALA A 147 ? ? -176.07 -134.69 40 5 PHE B 489 ? ? -128.01 -74.90 41 5 GLU B 490 ? ? -159.20 79.39 42 6 THR A 67 ? ? -103.58 71.29 43 6 GLU A 96 ? ? 67.12 -1.87 44 6 THR A 118 ? ? -127.90 -53.27 45 6 THR A 123 ? ? -104.91 -167.41 46 6 VAL A 129 ? ? -109.62 -65.82 47 6 ALA A 147 ? ? -175.24 -132.62 48 6 ALA B 487 ? ? 80.14 -147.30 49 6 PHE B 489 ? ? -138.04 -75.15 50 6 GLU B 490 ? ? -171.14 90.21 51 7 THR A 67 ? ? -102.93 73.04 52 7 GLU A 96 ? ? 65.04 -1.64 53 7 THR A 118 ? ? -137.21 -46.07 54 7 THR A 123 ? ? -101.05 -168.63 55 7 VAL A 129 ? ? -103.89 -60.42 56 7 ALA A 147 ? ? -179.11 -134.15 57 7 ALA B 487 ? ? 52.39 -150.20 58 7 PHE B 489 ? ? -137.90 -74.07 59 7 GLU B 490 ? ? -169.31 86.22 60 8 THR A 67 ? ? -115.36 77.51 61 8 GLU A 96 ? ? 64.68 -1.84 62 8 THR A 118 ? ? -145.24 -52.03 63 8 ASN A 119 ? ? -75.69 20.82 64 8 THR A 123 ? ? -108.21 -167.64 65 8 VAL A 129 ? ? -109.03 -64.39 66 8 ALA A 147 ? ? -179.15 -132.98 67 8 ALA B 487 ? ? 79.02 146.02 68 8 PHE B 489 ? ? -129.77 -80.36 69 8 GLU B 490 ? ? -157.29 81.74 70 9 THR A 67 ? ? -112.80 71.50 71 9 GLU A 96 ? ? 64.31 -2.35 72 9 THR A 118 ? ? -140.78 -53.12 73 9 THR A 123 ? ? -109.77 -167.95 74 9 VAL A 129 ? ? -104.84 -62.01 75 9 ALA A 147 ? ? -176.89 -135.20 76 9 PHE B 489 ? ? -108.86 -79.83 77 9 GLU B 490 ? ? -158.86 84.97 78 10 THR A 67 ? ? -112.13 72.20 79 10 SER A 78 ? ? -39.05 136.26 80 10 GLU A 96 ? ? 63.82 -0.86 81 10 LEU A 116 ? ? -121.48 -57.79 82 10 THR A 118 ? ? -155.80 -32.56 83 10 THR A 123 ? ? -100.46 -167.55 84 10 VAL A 129 ? ? -104.23 -64.39 85 10 ALA A 147 ? ? -177.05 -134.20 86 10 ALA B 487 ? ? 60.06 -145.87 87 10 PHE B 489 ? ? -135.36 -78.46 88 10 GLU B 490 ? ? -163.07 84.82 89 11 THR A 67 ? ? -104.35 69.20 90 11 THR A 118 ? ? -155.21 -30.66 91 11 ALA A 147 ? ? -175.70 -132.35 92 11 PHE B 489 ? ? -105.87 -73.66 93 11 GLU B 490 ? ? -171.53 88.39 94 12 THR A 67 ? ? -106.56 64.25 95 12 THR A 74 ? ? -159.95 -158.85 96 12 LEU A 116 ? ? -102.20 -61.47 97 12 THR A 118 ? ? -139.73 -53.75 98 12 THR A 123 ? ? -102.21 -166.03 99 12 ALA A 147 ? ? -176.16 -136.51 100 12 ALA A 158 ? ? 39.57 45.72 101 12 PHE B 489 ? ? -105.09 -81.30 102 12 GLU B 490 ? ? -172.64 92.63 103 13 THR A 67 ? ? -106.42 69.59 104 13 GLU A 96 ? ? 62.79 -0.67 105 13 THR A 118 ? ? -144.26 -49.60 106 13 ASN A 119 ? ? -79.37 21.00 107 13 THR A 123 ? ? -107.39 -167.92 108 13 VAL A 129 ? ? -105.97 -63.97 109 13 ALA A 147 ? ? -176.24 -134.69 110 13 ALA B 487 ? ? -57.46 -110.08 111 13 PHE B 489 ? ? -137.38 -85.48 112 13 GLU B 490 ? ? -154.90 82.05 113 14 THR A 67 ? ? -112.58 68.67 114 14 GLU A 96 ? ? 69.54 -2.65 115 14 LEU A 113 ? ? -49.81 -17.57 116 14 THR A 118 ? ? -137.27 -43.43 117 14 THR A 123 ? ? -101.54 -166.91 118 14 ALA A 147 ? ? -178.36 -134.41 119 14 ALA B 487 ? ? -112.58 -98.39 120 14 PHE B 489 ? ? -143.34 35.03 121 14 GLU B 490 ? ? 78.06 88.12 122 15 THR A 67 ? ? -113.16 78.12 123 15 THR A 118 ? ? -136.29 -48.83 124 15 THR A 123 ? ? -102.83 -165.98 125 15 ALA A 147 ? ? -179.12 -134.46 126 15 ALA B 487 ? ? 64.61 -144.10 127 15 PHE B 489 ? ? -124.10 -81.53 128 15 GLU B 490 ? ? -165.77 89.18 129 16 THR A 67 ? ? -102.96 74.35 130 16 GLU A 96 ? ? 69.19 -2.40 131 16 LEU A 116 ? ? -99.22 -60.41 132 16 THR A 118 ? ? -138.21 -49.86 133 16 THR A 123 ? ? -102.35 -166.43 134 16 VAL A 129 ? ? -105.56 -61.99 135 16 ALA A 147 ? ? -178.23 -134.40 136 16 PHE B 489 ? ? -136.43 -84.79 137 16 GLU B 490 ? ? -156.74 83.44 138 17 THR A 67 ? ? -109.27 65.90 139 17 GLU A 96 ? ? 70.05 -5.21 140 17 LEU A 116 ? ? -98.80 -60.14 141 17 THR A 118 ? ? -138.04 -52.65 142 17 THR A 123 ? ? -106.17 -168.24 143 17 VAL A 129 ? ? -105.01 -62.47 144 17 ALA A 147 ? ? -177.39 -135.01 145 17 ALA B 487 ? ? 64.14 -160.05 146 17 PHE B 489 ? ? -130.90 -81.45 147 17 GLU B 490 ? ? -172.56 91.81 148 18 THR A 67 ? ? -103.13 72.71 149 18 GLU A 96 ? ? 67.48 -2.49 150 18 THR A 118 ? ? -130.77 -48.43 151 18 THR A 123 ? ? -111.59 -167.44 152 18 ALA A 147 ? ? -177.29 -132.56 153 18 ALA A 158 ? ? 150.53 45.09 154 18 ALA B 487 ? ? 70.27 157.37 155 18 PHE B 489 ? ? -122.03 -80.71 156 18 GLU B 490 ? ? -153.48 82.34 157 19 THR A 67 ? ? -104.11 76.19 158 19 GLU A 96 ? ? 66.88 -4.71 159 19 LEU A 116 ? ? -126.70 -57.88 160 19 THR A 118 ? ? -125.36 -53.36 161 19 THR A 123 ? ? -108.60 -167.70 162 19 ALA A 147 ? ? -179.79 -133.14 163 19 PHE B 489 ? ? -121.39 -74.90 164 19 GLU B 490 ? ? -162.06 84.42 165 20 THR A 67 ? ? -106.60 74.97 166 20 GLU A 96 ? ? 61.05 -1.75 167 20 THR A 118 ? ? -148.87 -50.64 168 20 THR A 123 ? ? -100.17 -167.78 169 20 VAL A 129 ? ? -103.84 -60.89 170 20 ALA A 147 ? ? -175.45 -132.59 171 20 PHE B 489 ? ? -118.01 -80.07 172 20 GLU B 490 ? ? -171.55 89.18 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI52217 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 5T32GM007185-43 2 # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'mass spectrometry' 'peptide crosslinking was quantified by MS' 2 1 cross-linking 'pilin sortase mediated isopeptide bond formed between peptide and SpaA domain' 3 1 'assay for oligomerization' 'peptide crosslinking was quantified by SDS-PAGE and HPLC' #