HEADER VIRAL PROTEIN 23-SEP-20 7K7P TITLE STRUCTURE OF SARS-COV-2 NONSTUCTURAL PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOST TRANSLATION INHIBITOR NSP1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: NSP1,LEADER PROTEIN,NON-STRUCTURAL PROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SARS-COV-2, CORONAVIRUS, NSP1, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.J.GREEN,C.M.PETIT,L.K.CLARK REVDAT 4 18-OCT-23 7K7P 1 REMARK REVDAT 3 17-MAR-21 7K7P 1 JRNL REVDAT 2 27-JAN-21 7K7P 1 COMPND REVDAT 1 30-SEP-20 7K7P 0 JRNL AUTH L.K.CLARK,T.J.GREEN,C.M.PETIT JRNL TITL STRUCTURE OF NONSTRUCTURAL PROTEIN 1 FROM SARS-COV-2. JRNL REF J.VIROL. V. 95 2021 JRNL REFN ESSN 1098-5514 JRNL PMID 33234675 JRNL DOI 10.1128/JVI.02019-20 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4200 - 3.3800 1.00 1426 159 0.1706 0.1764 REMARK 3 2 3.3800 - 2.6800 1.00 1326 147 0.1832 0.2311 REMARK 3 3 2.6800 - 2.3500 1.00 1293 144 0.2013 0.2325 REMARK 3 4 2.3400 - 2.1300 1.00 1285 142 0.1901 0.2350 REMARK 3 5 2.1300 - 1.9800 1.00 1273 143 0.1979 0.2406 REMARK 3 6 1.9800 - 1.8600 1.00 1241 137 0.2051 0.2417 REMARK 3 7 1.8600 - 1.7700 0.98 1251 139 0.2507 0.2611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1715 -13.4804 -0.5644 REMARK 3 T TENSOR REMARK 3 T11: 0.2511 T22: 0.1418 REMARK 3 T33: 0.2009 T12: -0.0253 REMARK 3 T13: 0.0555 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.5329 L22: 0.4413 REMARK 3 L33: 0.1459 L12: -0.2379 REMARK 3 L13: -0.0405 L23: -0.1978 REMARK 3 S TENSOR REMARK 3 S11: -0.4570 S12: -0.0453 S13: -0.3177 REMARK 3 S21: -1.0387 S22: 0.1350 S23: -0.8554 REMARK 3 S31: 0.0693 S32: 0.1252 S33: -0.0352 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6319 -26.1051 14.7312 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.0652 REMARK 3 T33: 0.0723 T12: 0.0054 REMARK 3 T13: 0.0062 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.1047 L22: 0.3827 REMARK 3 L33: 0.6627 L12: 0.2637 REMARK 3 L13: 0.0942 L23: -0.1242 REMARK 3 S TENSOR REMARK 3 S11: -0.1502 S12: 0.2414 S13: -0.3617 REMARK 3 S21: 0.0442 S22: 0.2816 S23: 0.0776 REMARK 3 S31: -0.0276 S32: 0.0014 S33: 0.0541 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8819 -15.2030 12.6681 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: 0.1137 REMARK 3 T33: 0.1616 T12: -0.0487 REMARK 3 T13: -0.0314 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 0.6827 L22: 1.5940 REMARK 3 L33: 2.1412 L12: -0.6762 REMARK 3 L13: 0.2888 L23: 0.8913 REMARK 3 S TENSOR REMARK 3 S11: -0.3356 S12: 0.2599 S13: 0.6213 REMARK 3 S21: 0.0921 S22: 0.5994 S23: -0.6156 REMARK 3 S31: -0.4955 S32: 0.7868 S33: 0.0881 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4454 -21.8856 9.2587 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.1594 REMARK 3 T33: 0.1965 T12: 0.0280 REMARK 3 T13: 0.0715 T23: 0.0823 REMARK 3 L TENSOR REMARK 3 L11: 0.0322 L22: 0.2230 REMARK 3 L33: 0.4894 L12: -0.0458 REMARK 3 L13: 0.0688 L23: 0.1195 REMARK 3 S TENSOR REMARK 3 S11: -0.1026 S12: -0.1816 S13: 0.0625 REMARK 3 S21: 0.2219 S22: 0.2624 S23: 0.4044 REMARK 3 S31: -0.1543 S32: -0.2251 S33: 0.1064 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7774 -17.2920 14.8714 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.1135 REMARK 3 T33: 0.1384 T12: 0.0156 REMARK 3 T13: 0.0782 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.2065 L22: 1.3626 REMARK 3 L33: 1.8264 L12: 0.2006 REMARK 3 L13: 0.2783 L23: -1.3388 REMARK 3 S TENSOR REMARK 3 S11: -0.1991 S12: -0.0825 S13: 0.0930 REMARK 3 S21: 0.7145 S22: 0.3743 S23: 0.4411 REMARK 3 S31: -0.7729 S32: -0.4283 S33: -0.0675 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5206 -6.9700 -5.2373 REMARK 3 T TENSOR REMARK 3 T11: 0.8874 T22: 0.6628 REMARK 3 T33: 0.2029 T12: 0.1602 REMARK 3 T13: 0.0192 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.8380 L22: 0.7919 REMARK 3 L33: 0.2613 L12: 1.5409 REMARK 3 L13: 0.8693 L23: 0.4428 REMARK 3 S TENSOR REMARK 3 S11: -0.2984 S12: 0.2712 S13: 0.2909 REMARK 3 S21: -1.1799 S22: -0.0975 S23: 0.6836 REMARK 3 S31: 1.0154 S32: -0.2683 S33: -0.0649 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6445 -9.9277 9.6534 REMARK 3 T TENSOR REMARK 3 T11: 0.1904 T22: 0.1224 REMARK 3 T33: 0.1602 T12: 0.0021 REMARK 3 T13: 0.0168 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.2419 L22: 0.3763 REMARK 3 L33: 0.1222 L12: 0.0872 REMARK 3 L13: 0.0481 L23: 0.1806 REMARK 3 S TENSOR REMARK 3 S11: -0.1835 S12: -0.0410 S13: 0.2218 REMARK 3 S21: 0.1636 S22: 0.0834 S23: 0.1239 REMARK 3 S31: -0.2236 S32: -0.4335 S33: -0.0016 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0889 -7.2813 15.8514 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.2002 REMARK 3 T33: 0.2173 T12: 0.0124 REMARK 3 T13: 0.0534 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.3160 L22: 0.3880 REMARK 3 L33: 0.2463 L12: -0.2331 REMARK 3 L13: -0.2269 L23: -0.1246 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: -0.1397 S13: -0.1893 REMARK 3 S21: 0.4222 S22: 0.3920 S23: 0.3030 REMARK 3 S31: 0.1211 S32: 0.0885 S33: 0.0120 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7585 -24.5229 7.3814 REMARK 3 T TENSOR REMARK 3 T11: 0.1185 T22: 0.0821 REMARK 3 T33: 0.1018 T12: -0.0234 REMARK 3 T13: -0.0098 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.1112 L22: 0.4607 REMARK 3 L33: 1.1010 L12: 0.2722 REMARK 3 L13: 0.1316 L23: 0.5589 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: 0.0888 S13: 0.0383 REMARK 3 S21: 0.1079 S22: 0.1713 S23: -0.0144 REMARK 3 S31: 0.0627 S32: 0.1329 S33: 0.1945 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 108 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6097 -13.4184 0.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.3125 T22: 0.2036 REMARK 3 T33: 0.2002 T12: -0.0358 REMARK 3 T13: 0.0070 T23: 0.0511 REMARK 3 L TENSOR REMARK 3 L11: 0.8935 L22: 1.1050 REMARK 3 L33: 0.3054 L12: 0.1736 REMARK 3 L13: 0.1208 L23: 0.1568 REMARK 3 S TENSOR REMARK 3 S11: -0.2835 S12: 0.1937 S13: 0.3693 REMARK 3 S21: -0.6727 S22: 0.0929 S23: 0.4901 REMARK 3 S31: -0.4241 S32: -0.1117 S33: -0.0582 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000252010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 35.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HSX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE TRIHYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.5, 30 % W/V POLYETHYLENE REMARK 280 GLYCOL 8,000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.62650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 18.29450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 18.29450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.93975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 18.29450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 18.29450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.31325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 18.29450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 18.29450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.93975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 18.29450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 18.29450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.31325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.62650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 205 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 67 -146.16 -83.43 REMARK 500 HIS B 72 -132.51 59.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 65 ASP B 66 -144.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 7K7P B 1 118 UNP P0DTD1 R1AB_SARS2 10 127 SEQRES 1 B 118 GLU LYS THR HIS VAL GLN LEU SER LEU PRO VAL LEU GLN SEQRES 2 B 118 VAL ARG ASP VAL LEU VAL ARG GLY PHE GLY ASP SER VAL SEQRES 3 B 118 GLU GLU VAL LEU SER GLU ALA ARG GLN HIS LEU LYS ASP SEQRES 4 B 118 GLY THR CYS GLY LEU VAL GLU VAL GLU LYS GLY VAL LEU SEQRES 5 B 118 PRO GLN LEU GLU GLN PRO TYR VAL PHE ILE LYS ARG SER SEQRES 6 B 118 ASP ALA ARG THR ALA PRO HIS GLY HIS VAL MET VAL GLU SEQRES 7 B 118 LEU VAL ALA GLU LEU GLU GLY ILE GLN TYR GLY ARG SER SEQRES 8 B 118 GLY GLU THR LEU GLY VAL LEU VAL PRO HIS VAL GLY GLU SEQRES 9 B 118 ILE PRO VAL ALA TYR ARG LYS VAL LEU LEU ARG LYS ASN SEQRES 10 B 118 GLY FORMUL 2 HOH *114(H2 O) HELIX 1 AA1 GLN B 13 VAL B 17 5 5 HELIX 2 AA2 SER B 25 GLY B 40 1 16 HELIX 3 AA3 VAL B 51 LEU B 55 5 5 SHEET 1 AA1 8 ILE B 86 TYR B 88 0 SHEET 2 AA1 8 VAL B 75 LEU B 83 -1 N ALA B 81 O TYR B 88 SHEET 3 AA1 8 ALA B 108 ARG B 115 1 O LEU B 113 N VAL B 75 SHEET 4 AA1 8 HIS B 4 VAL B 11 -1 N VAL B 11 O ALA B 108 SHEET 5 AA1 8 CYS B 42 VAL B 45 1 O LEU B 44 N PRO B 10 SHEET 6 AA1 8 THR B 94 PRO B 100 -1 O VAL B 99 N GLY B 43 SHEET 7 AA1 8 TYR B 59 ARG B 64 -1 N VAL B 60 O LEU B 98 SHEET 8 AA1 8 VAL B 75 LEU B 83 -1 O VAL B 80 N PHE B 61 CISPEP 1 GLN B 57 PRO B 58 0 -7.82 CRYST1 36.589 36.589 141.253 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027331 0.000000 0.000000 0.00000 SCALE2 0.000000 0.027331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007079 0.00000