HEADER VIRAL PROTEIN 25-SEP-20 7K87 TITLE THE CRYSTAL STRUCTURE OF THE 2009 H1N1 PA ENDONUCLEASE IN COMPLEX WITH TITLE 2 SJ000986436 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PA-X; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS, INFLUENZA A VIRUS SOURCE 3 (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 11320, 655278; SOURCE 5 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 6 GENE: PA-X, PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,S.JAYARAMAN,Z.RANKOVIC,S.W.WHITE REVDAT 3 25-OCT-23 7K87 1 REMARK REVDAT 2 29-MAR-23 7K87 1 JRNL REVDAT 1 29-SEP-21 7K87 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 7504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7500 - 3.8900 0.95 2437 120 0.1805 0.1920 REMARK 3 2 3.8900 - 3.0900 0.98 2373 108 0.2098 0.2415 REMARK 3 3 3.0900 - 2.7000 0.98 2317 149 0.2925 0.3865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.448 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1565 REMARK 3 ANGLE : 0.575 2116 REMARK 3 CHIRALITY : 0.041 221 REMARK 3 PLANARITY : 0.004 268 REMARK 3 DIHEDRAL : 9.012 226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2029 20.8342 7.5940 REMARK 3 T TENSOR REMARK 3 T11: 0.7498 T22: 0.6517 REMARK 3 T33: 0.5322 T12: -0.0223 REMARK 3 T13: 0.2341 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 5.7204 L22: 3.0735 REMARK 3 L33: 5.8704 L12: -1.7673 REMARK 3 L13: 1.5095 L23: 0.1669 REMARK 3 S TENSOR REMARK 3 S11: 0.1725 S12: 0.8816 S13: -0.4163 REMARK 3 S21: -0.5764 S22: -0.4010 S23: 0.0509 REMARK 3 S31: 0.7725 S32: 0.4065 S33: 0.1401 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4470 21.2760 22.0889 REMARK 3 T TENSOR REMARK 3 T11: 0.8047 T22: 0.6069 REMARK 3 T33: 0.4701 T12: -0.0401 REMARK 3 T13: 0.1517 T23: 0.2153 REMARK 3 L TENSOR REMARK 3 L11: 7.0642 L22: 2.5573 REMARK 3 L33: 2.7215 L12: -0.4903 REMARK 3 L13: -0.5169 L23: -1.1536 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: -0.3893 S13: -0.1508 REMARK 3 S21: 0.4217 S22: -0.2838 S23: -0.2913 REMARK 3 S31: 0.5158 S32: 0.2303 S33: 0.1750 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0977 10.9291 27.6447 REMARK 3 T TENSOR REMARK 3 T11: 1.4007 T22: 0.5997 REMARK 3 T33: 0.6998 T12: -0.0510 REMARK 3 T13: 0.1949 T23: 0.2727 REMARK 3 L TENSOR REMARK 3 L11: 0.5769 L22: 0.1210 REMARK 3 L33: 0.0712 L12: -0.2313 REMARK 3 L13: 0.0908 L23: 0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.0523 S13: -0.1995 REMARK 3 S21: -0.4723 S22: 0.3986 S23: 0.4149 REMARK 3 S31: 0.4902 S32: -0.4087 S33: 0.2135 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9324 22.2663 22.1065 REMARK 3 T TENSOR REMARK 3 T11: 0.7894 T22: 0.5357 REMARK 3 T33: 0.5328 T12: -0.1770 REMARK 3 T13: 0.3173 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.2256 L22: 0.7493 REMARK 3 L33: 5.6071 L12: -0.1323 REMARK 3 L13: 1.7426 L23: -0.7783 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: -0.4778 S13: -0.1921 REMARK 3 S21: 0.1922 S22: -0.1574 S23: 0.2073 REMARK 3 S31: 0.5678 S32: -0.5840 S33: -0.0167 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000252070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7507 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.99500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.75100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.75100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.39550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.75100 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.75100 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.39550 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.75100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.75100 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.39550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.75100 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.75100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.39550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.75100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.75100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.39550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.75100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.75100 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.39550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.75100 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.75100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.39550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.75100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.75100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.39550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.50200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.50200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 89.50200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 89.50200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 89.50200 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 89.50200 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 89.50200 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 89.50200 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 MET A 155 CG SD CE REMARK 470 LYS A 158 CE NZ REMARK 470 ARG A 170 NE CZ NH1 NH2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MN MN A 403 O10 W5V A 404 1.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A -3 154.38 67.70 REMARK 500 ILE A 30 -62.28 -103.19 REMARK 500 ARG A 125 -156.52 -130.90 REMARK 500 SER A 140 92.15 -67.76 REMARK 500 THR A 162 -44.83 66.07 REMARK 500 SER A 194 -30.70 -146.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 97.2 REMARK 620 3 GLU A 119 OE2 175.7 82.3 REMARK 620 4 ILE A 120 O 84.4 88.9 91.3 REMARK 620 5 W5V A 404 O13 102.4 94.1 81.9 172.1 REMARK 620 6 W5V A 404 O15 87.0 171.1 92.9 83.8 92.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 101.7 REMARK 620 3 W5V A 404 O13 151.7 77.9 REMARK 620 4 HOH A 501 O 74.9 92.7 133.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VL3 RELATED DB: PDB DBREF1 7K87 A 1 50 UNP A0A4D6EED0_9INFA DBREF2 7K87 A A0A4D6EED0 1 50 DBREF 7K87 A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 7K87 MET A -19 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 GLY A -18 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 SER A -17 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 SER A -16 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 HIS A -15 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 HIS A -14 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 HIS A -13 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 HIS A -12 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 HIS A -11 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 HIS A -10 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 SER A -9 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 SER A -8 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 GLY A -7 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 LEU A -6 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 VAL A -5 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 PRO A -4 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 ARG A -3 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 GLY A -2 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 SER A -1 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 HIS A 0 UNP A0A4D6EED EXPRESSION TAG SEQADV 7K87 GLY A 51 UNP A0A4D6EED LINKER SEQADV 7K87 GLY A 52 UNP A0A4D6EED LINKER SEQADV 7K87 SER A 53 UNP A0A4D6EED LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET QQ4 A 401 41 HET MN A 402 1 HET MN A 403 1 HET W5V A 404 29 HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM MN MANGANESE (II) ION HETNAM W5V 2-(2,6-DIFLUOROPHENYL)-5-HYDROXY-N-[2-(2- HETNAM 2 W5V METHOXYPYRIDIN-4-YL)ETHYL]-6-OXO-3,6- HETNAM 3 W5V DIHYDROPYRIMIDINE-4-CARBOXAMIDE HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 QQ4 C36 H56 N6 O6 FORMUL 3 MN 2(MN 2+) FORMUL 5 W5V C19 H16 F2 N4 O4 FORMUL 6 HOH *43(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 ILE A 138 1 13 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 402 1555 1555 2.33 LINK OE1 GLU A 80 MN MN A 403 1555 1555 2.38 LINK OD2 ASP A 108 MN MN A 402 1555 1555 2.41 LINK OD1 ASP A 108 MN MN A 403 1555 1555 2.03 LINK OE2 GLU A 119 MN MN A 402 1555 1555 2.06 LINK O ILE A 120 MN MN A 402 1555 1555 2.10 LINK MN MN A 402 O13 W5V A 404 1555 1555 1.99 LINK MN MN A 402 O15 W5V A 404 1555 1555 1.87 LINK MN MN A 403 O13 W5V A 404 1555 1555 2.30 LINK MN MN A 403 O HOH A 501 1555 1555 2.78 CRYST1 89.502 89.502 132.791 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011173 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007531 0.00000