HEADER STRUCTURAL PROTEIN 26-SEP-20 7K8E TITLE BETA-LACTAMASE MIXED WITH CEFTRIAXONE, 5MS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: BLAC, ERS027646_02769; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE, ANTIBIOTIC, HYDROLASE-ANTIBIOTIC COMPLEX, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.PANDEY,M.SCHMIDT REVDAT 3 18-OCT-23 7K8E 1 REMARK REVDAT 2 10-NOV-21 7K8E 1 JRNL REVDAT 1 22-SEP-21 7K8E 0 JRNL AUTH S.PANDEY,G.CALVEY,A.M.KATZ,T.N.MALLA,F.H.M.KOUA, JRNL AUTH 2 J.M.MARTIN-GARCIA,I.POUDYAL,J.H.YANG,M.VAKILI,O.YEFANOV, JRNL AUTH 3 K.A.ZIELINSKI,S.BAJT,S.AWEL,K.DOERNER,M.FRANK,L.GELISIO, JRNL AUTH 4 R.JERNIGAN,H.KIRKWOOD,M.KLOOS,J.KOLIYADU,V.MARIANI, JRNL AUTH 5 M.D.MILLER,G.MILLS,G.NELSON,J.L.J.OLMOS,A.SADRI,T.SATO, JRNL AUTH 6 A.TOLSTIKOVA,W.XU,A.OURMAZD,J.C.H.SPENCE,P.SCHWANDER, JRNL AUTH 7 A.BARTY,H.N.CHAPMAN,P.FROMME,A.P.MANCUSO,G.N.J.PHILLIPS, JRNL AUTH 8 R.BEAN,L.POLLACK,M.SCHMIDT JRNL TITL OBSERVATION OF SUBSTRATE DIFFUSION AND LIGAND BINDING IN JRNL TITL 2 ENZYME CRYSTALS USING HIGH-REPETITION-RATE MIX-AND-INJECT JRNL TITL 3 SERIAL CRYSTALLOGRAPHY JRNL REF IUCRJ V. 8 878 2021 JRNL REFN ESSN 2052-2525 JRNL DOI 10.1107/S2052252521008125 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.3 REMARK 3 NUMBER OF REFLECTIONS : 52163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.889 REMARK 3 FREE R VALUE TEST SET COUNT : 2550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6900 - 6.2575 0.98 3474 179 0.2005 0.2034 REMARK 3 2 6.2575 - 4.9802 0.99 3518 156 0.2000 0.2052 REMARK 3 3 4.9802 - 4.3545 0.99 3448 195 0.1728 0.1940 REMARK 3 4 4.3545 - 3.9582 0.99 3423 211 0.1839 0.1950 REMARK 3 5 3.9582 - 3.6754 0.99 3424 189 0.1961 0.2206 REMARK 3 6 3.6754 - 3.4594 1.00 3483 176 0.2074 0.2224 REMARK 3 7 3.4594 - 3.2865 1.00 3452 199 0.2342 0.2747 REMARK 3 8 3.2865 - 3.1438 0.98 3373 182 0.2555 0.3025 REMARK 3 9 3.1438 - 3.0230 0.88 3087 147 0.2971 0.3021 REMARK 3 10 3.0230 - 2.9188 0.76 2622 115 0.3291 0.3968 REMARK 3 11 2.9188 - 2.8277 0.66 2292 112 0.3477 0.3879 REMARK 3 12 2.8277 - 2.7470 0.56 1974 92 0.3594 0.3330 REMARK 3 13 2.7470 - 2.6747 0.58 1999 98 0.3647 0.3484 REMARK 3 14 2.6747 - 2.6095 0.67 2359 112 0.3568 0.3804 REMARK 3 15 2.6095 - 2.5503 0.57 1970 88 0.3756 0.4354 REMARK 3 16 2.5503 - 2.4961 0.65 2230 122 0.3812 0.4063 REMARK 3 17 2.4961 - 2.4462 0.46 1597 87 0.4013 0.4884 REMARK 3 18 2.4462 - 2.4001 0.54 1888 90 0.4385 0.4557 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.396 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8202 REMARK 3 ANGLE : 1.069 11206 REMARK 3 CHIRALITY : 0.049 1278 REMARK 3 PLANARITY : 0.004 1486 REMARK 3 DIHEDRAL : 12.968 4884 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 74 THROUGH 80 OR REMARK 3 RESID 82 THROUGH 192 OR RESID 194 THROUGH REMARK 3 265)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 74 THROUGH 80 OR REMARK 3 RESID 82 THROUGH 192 OR RESID 194 THROUGH REMARK 3 265)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 74 THROUGH 80 OR REMARK 3 RESID 82 THROUGH 192 OR RESID 194 THROUGH REMARK 3 265)) REMARK 3 SELECTION : (CHAIN 'C' AND (RESID 74 THROUGH 80 OR REMARK 3 RESID 82 THROUGH 192 OR RESID 194 THROUGH REMARK 3 265)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 74 THROUGH 80 OR REMARK 3 RESID 82 THROUGH 192 OR RESID 194 THROUGH REMARK 3 265)) REMARK 3 SELECTION : (CHAIN 'D' AND (RESID 74 THROUGH 80 OR REMARK 3 RESID 82 THROUGH 192 OR RESID 194 THROUGH REMARK 3 265)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000252082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : SPB/SFX REMARK 200 X-RAY GENERATOR MODEL : EUROPEAN XFEL BEAMLINE SPB/SFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.33 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : AGIPD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65232 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1758. REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6B5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE, MICROBATCH, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.39000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 ALA A 28 REMARK 465 GLY B 27 REMARK 465 ALA B 28 REMARK 465 GLY C 27 REMARK 465 ALA C 28 REMARK 465 GLY D 27 REMARK 465 ALA D 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY D 142 O HOH D 401 1.81 REMARK 500 OE2 GLU C 64 O HOH C 401 1.88 REMARK 500 O LEU C 136 O HOH C 402 1.92 REMARK 500 O HOH C 415 O HOH C 431 1.92 REMARK 500 O HOH A 477 O HOH A 478 1.93 REMARK 500 O HOH B 447 O HOH C 410 1.93 REMARK 500 O HOH C 439 O HOH C 446 1.94 REMARK 500 O HOH B 455 O HOH B 457 1.95 REMARK 500 OE1 GLU D 179 O HOH D 402 1.96 REMARK 500 O HOH C 401 O HOH C 430 1.96 REMARK 500 O2 9F2 B 301 O HOH B 401 1.97 REMARK 500 O HOH A 474 O HOH A 475 1.97 REMARK 500 O HOH B 456 O HOH B 458 1.99 REMARK 500 O ALA C 207 O HOH C 403 1.99 REMARK 500 OD1 ASP A 139 O HOH A 401 1.99 REMARK 500 NZ LYS C 73 O HOH C 404 2.00 REMARK 500 N LEU C 140 O HOH C 402 2.01 REMARK 500 O HOH A 459 O HOH A 464 2.05 REMARK 500 OG1 THR D 286 O HOH D 403 2.07 REMARK 500 O HOH A 479 O HOH D 447 2.07 REMARK 500 OD1 ASP D 122 O HOH D 404 2.08 REMARK 500 O HOH A 405 O HOH B 412 2.10 REMARK 500 O HOH B 459 O HOH B 461 2.10 REMARK 500 O HOH C 433 O HOH C 444 2.10 REMARK 500 NE2 GLN C 83 O HOH C 405 2.11 REMARK 500 O HOH A 415 O HOH A 461 2.11 REMARK 500 OE2 GLU B 64 O HOH B 402 2.12 REMARK 500 NH2 ARG C 33 O HOH C 406 2.13 REMARK 500 O HOH A 422 O HOH A 458 2.15 REMARK 500 O HOH A 407 O HOH A 454 2.16 REMARK 500 O HOH A 431 O HOH A 441 2.17 REMARK 500 OH TYR C 48 O HOH C 407 2.18 REMARK 500 OD1 ASP D 230 O HOH D 405 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -140.87 49.26 REMARK 500 ARG A 222 -108.74 -116.34 REMARK 500 TYR B 60 109.50 -163.27 REMARK 500 CYS B 69 -143.79 51.48 REMARK 500 ARG B 222 -110.50 -116.59 REMARK 500 THR C 52 -168.30 -122.73 REMARK 500 CYS C 69 -150.58 52.59 REMARK 500 ARG C 222 -109.78 -116.02 REMARK 500 CYS D 69 -149.07 57.25 REMARK 500 ARG D 222 -110.04 -115.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 473 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 474 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 475 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 476 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 477 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A 478 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A 479 DISTANCE = 8.66 ANGSTROMS REMARK 525 HOH A 480 DISTANCE = 9.52 ANGSTROMS REMARK 525 HOH B 457 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B 458 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH B 459 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B 460 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B 461 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH C 456 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH C 457 DISTANCE = 8.10 ANGSTROMS REMARK 525 HOH C 458 DISTANCE = 8.22 ANGSTROMS REMARK 525 HOH D 445 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH D 446 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH D 447 DISTANCE = 7.57 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9F2 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9F2 D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 302 DBREF1 7K8E A 27 293 UNP A0A655AHQ9_MYCTX DBREF2 7K8E A A0A655AHQ9 4 270 DBREF1 7K8E B 27 293 UNP A0A655AHQ9_MYCTX DBREF2 7K8E B A0A655AHQ9 4 270 DBREF1 7K8E C 27 293 UNP A0A655AHQ9_MYCTX DBREF2 7K8E C A0A655AHQ9 4 270 DBREF1 7K8E D 27 293 UNP A0A655AHQ9_MYCTX DBREF2 7K8E D A0A655AHQ9 4 270 SEQRES 1 A 267 GLY ALA ASP LEU ALA ASP ARG PHE ALA GLU LEU GLU ARG SEQRES 2 A 267 ARG TYR ASP ALA ARG LEU GLY VAL TYR VAL PRO ALA THR SEQRES 3 A 267 GLY THR THR ALA ALA ILE GLU TYR ARG ALA ASP GLU ARG SEQRES 4 A 267 PHE ALA PHE CYS SER THR PHE LYS ALA PRO LEU VAL ALA SEQRES 5 A 267 ALA VAL LEU HIS GLN ASN PRO LEU THR HIS LEU ASP LYS SEQRES 6 A 267 LEU ILE THR TYR THR SER ASP ASP ILE ARG SER ILE SER SEQRES 7 A 267 PRO VAL ALA GLN GLN HIS VAL GLN THR GLY MET THR ILE SEQRES 8 A 267 GLY GLN LEU CYS ASP ALA ALA ILE ARG TYR SER ASP GLY SEQRES 9 A 267 THR ALA ALA ASN LEU LEU LEU ALA ASP LEU GLY GLY PRO SEQRES 10 A 267 GLY GLY GLY THR ALA ALA PHE THR GLY TYR LEU ARG SER SEQRES 11 A 267 LEU GLY ASP THR VAL SER ARG LEU ASP ALA GLU GLU PRO SEQRES 12 A 267 GLU LEU ASN ARG ASP PRO PRO GLY ASP GLU ARG ASP THR SEQRES 13 A 267 THR THR PRO HIS ALA ILE ALA LEU VAL LEU GLN GLN LEU SEQRES 14 A 267 VAL LEU GLY ASN ALA LEU PRO PRO ASP LYS ARG ALA LEU SEQRES 15 A 267 LEU THR ASP TRP MET ALA ARG ASN THR THR GLY ALA LYS SEQRES 16 A 267 ARG ILE ARG ALA GLY PHE PRO ALA ASP TRP LYS VAL ILE SEQRES 17 A 267 ASP LYS THR GLY THR GLY ASP TYR GLY ARG ALA ASN ASP SEQRES 18 A 267 ILE ALA VAL VAL TRP SER PRO THR GLY VAL PRO TYR VAL SEQRES 19 A 267 VAL ALA VAL MET SER ASP ARG ALA GLY GLY GLY TYR ASP SEQRES 20 A 267 ALA GLU PRO ARG GLU ALA LEU LEU ALA GLU ALA ALA THR SEQRES 21 A 267 CYS VAL ALA GLY VAL LEU ALA SEQRES 1 B 267 GLY ALA ASP LEU ALA ASP ARG PHE ALA GLU LEU GLU ARG SEQRES 2 B 267 ARG TYR ASP ALA ARG LEU GLY VAL TYR VAL PRO ALA THR SEQRES 3 B 267 GLY THR THR ALA ALA ILE GLU TYR ARG ALA ASP GLU ARG SEQRES 4 B 267 PHE ALA PHE CYS SER THR PHE LYS ALA PRO LEU VAL ALA SEQRES 5 B 267 ALA VAL LEU HIS GLN ASN PRO LEU THR HIS LEU ASP LYS SEQRES 6 B 267 LEU ILE THR TYR THR SER ASP ASP ILE ARG SER ILE SER SEQRES 7 B 267 PRO VAL ALA GLN GLN HIS VAL GLN THR GLY MET THR ILE SEQRES 8 B 267 GLY GLN LEU CYS ASP ALA ALA ILE ARG TYR SER ASP GLY SEQRES 9 B 267 THR ALA ALA ASN LEU LEU LEU ALA ASP LEU GLY GLY PRO SEQRES 10 B 267 GLY GLY GLY THR ALA ALA PHE THR GLY TYR LEU ARG SER SEQRES 11 B 267 LEU GLY ASP THR VAL SER ARG LEU ASP ALA GLU GLU PRO SEQRES 12 B 267 GLU LEU ASN ARG ASP PRO PRO GLY ASP GLU ARG ASP THR SEQRES 13 B 267 THR THR PRO HIS ALA ILE ALA LEU VAL LEU GLN GLN LEU SEQRES 14 B 267 VAL LEU GLY ASN ALA LEU PRO PRO ASP LYS ARG ALA LEU SEQRES 15 B 267 LEU THR ASP TRP MET ALA ARG ASN THR THR GLY ALA LYS SEQRES 16 B 267 ARG ILE ARG ALA GLY PHE PRO ALA ASP TRP LYS VAL ILE SEQRES 17 B 267 ASP LYS THR GLY THR GLY ASP TYR GLY ARG ALA ASN ASP SEQRES 18 B 267 ILE ALA VAL VAL TRP SER PRO THR GLY VAL PRO TYR VAL SEQRES 19 B 267 VAL ALA VAL MET SER ASP ARG ALA GLY GLY GLY TYR ASP SEQRES 20 B 267 ALA GLU PRO ARG GLU ALA LEU LEU ALA GLU ALA ALA THR SEQRES 21 B 267 CYS VAL ALA GLY VAL LEU ALA SEQRES 1 C 267 GLY ALA ASP LEU ALA ASP ARG PHE ALA GLU LEU GLU ARG SEQRES 2 C 267 ARG TYR ASP ALA ARG LEU GLY VAL TYR VAL PRO ALA THR SEQRES 3 C 267 GLY THR THR ALA ALA ILE GLU TYR ARG ALA ASP GLU ARG SEQRES 4 C 267 PHE ALA PHE CYS SER THR PHE LYS ALA PRO LEU VAL ALA SEQRES 5 C 267 ALA VAL LEU HIS GLN ASN PRO LEU THR HIS LEU ASP LYS SEQRES 6 C 267 LEU ILE THR TYR THR SER ASP ASP ILE ARG SER ILE SER SEQRES 7 C 267 PRO VAL ALA GLN GLN HIS VAL GLN THR GLY MET THR ILE SEQRES 8 C 267 GLY GLN LEU CYS ASP ALA ALA ILE ARG TYR SER ASP GLY SEQRES 9 C 267 THR ALA ALA ASN LEU LEU LEU ALA ASP LEU GLY GLY PRO SEQRES 10 C 267 GLY GLY GLY THR ALA ALA PHE THR GLY TYR LEU ARG SER SEQRES 11 C 267 LEU GLY ASP THR VAL SER ARG LEU ASP ALA GLU GLU PRO SEQRES 12 C 267 GLU LEU ASN ARG ASP PRO PRO GLY ASP GLU ARG ASP THR SEQRES 13 C 267 THR THR PRO HIS ALA ILE ALA LEU VAL LEU GLN GLN LEU SEQRES 14 C 267 VAL LEU GLY ASN ALA LEU PRO PRO ASP LYS ARG ALA LEU SEQRES 15 C 267 LEU THR ASP TRP MET ALA ARG ASN THR THR GLY ALA LYS SEQRES 16 C 267 ARG ILE ARG ALA GLY PHE PRO ALA ASP TRP LYS VAL ILE SEQRES 17 C 267 ASP LYS THR GLY THR GLY ASP TYR GLY ARG ALA ASN ASP SEQRES 18 C 267 ILE ALA VAL VAL TRP SER PRO THR GLY VAL PRO TYR VAL SEQRES 19 C 267 VAL ALA VAL MET SER ASP ARG ALA GLY GLY GLY TYR ASP SEQRES 20 C 267 ALA GLU PRO ARG GLU ALA LEU LEU ALA GLU ALA ALA THR SEQRES 21 C 267 CYS VAL ALA GLY VAL LEU ALA SEQRES 1 D 267 GLY ALA ASP LEU ALA ASP ARG PHE ALA GLU LEU GLU ARG SEQRES 2 D 267 ARG TYR ASP ALA ARG LEU GLY VAL TYR VAL PRO ALA THR SEQRES 3 D 267 GLY THR THR ALA ALA ILE GLU TYR ARG ALA ASP GLU ARG SEQRES 4 D 267 PHE ALA PHE CYS SER THR PHE LYS ALA PRO LEU VAL ALA SEQRES 5 D 267 ALA VAL LEU HIS GLN ASN PRO LEU THR HIS LEU ASP LYS SEQRES 6 D 267 LEU ILE THR TYR THR SER ASP ASP ILE ARG SER ILE SER SEQRES 7 D 267 PRO VAL ALA GLN GLN HIS VAL GLN THR GLY MET THR ILE SEQRES 8 D 267 GLY GLN LEU CYS ASP ALA ALA ILE ARG TYR SER ASP GLY SEQRES 9 D 267 THR ALA ALA ASN LEU LEU LEU ALA ASP LEU GLY GLY PRO SEQRES 10 D 267 GLY GLY GLY THR ALA ALA PHE THR GLY TYR LEU ARG SER SEQRES 11 D 267 LEU GLY ASP THR VAL SER ARG LEU ASP ALA GLU GLU PRO SEQRES 12 D 267 GLU LEU ASN ARG ASP PRO PRO GLY ASP GLU ARG ASP THR SEQRES 13 D 267 THR THR PRO HIS ALA ILE ALA LEU VAL LEU GLN GLN LEU SEQRES 14 D 267 VAL LEU GLY ASN ALA LEU PRO PRO ASP LYS ARG ALA LEU SEQRES 15 D 267 LEU THR ASP TRP MET ALA ARG ASN THR THR GLY ALA LYS SEQRES 16 D 267 ARG ILE ARG ALA GLY PHE PRO ALA ASP TRP LYS VAL ILE SEQRES 17 D 267 ASP LYS THR GLY THR GLY ASP TYR GLY ARG ALA ASN ASP SEQRES 18 D 267 ILE ALA VAL VAL TRP SER PRO THR GLY VAL PRO TYR VAL SEQRES 19 D 267 VAL ALA VAL MET SER ASP ARG ALA GLY GLY GLY TYR ASP SEQRES 20 D 267 ALA GLU PRO ARG GLU ALA LEU LEU ALA GLU ALA ALA THR SEQRES 21 D 267 CYS VAL ALA GLY VAL LEU ALA HET PO4 A 301 5 HET 9F2 B 301 36 HET PO4 B 302 5 HET PO4 C 301 5 HET 9F2 D 301 36 HET PO4 D 302 5 HETNAM PO4 PHOSPHATE ION HETNAM 9F2 CEFTRIAXONE FORMUL 5 PO4 4(O4 P 3-) FORMUL 6 9F2 2(C18 H18 N8 O7 S3) FORMUL 11 HOH *246(H2 O) HELIX 1 AA1 ASP A 29 ASP A 42 1 14 HELIX 2 AA2 CYS A 69 THR A 71 5 3 HELIX 3 AA3 PHE A 72 ASN A 84 1 13 HELIX 4 AA4 PRO A 85 ASP A 90 5 6 HELIX 5 AA5 VAL A 106 HIS A 110 5 5 HELIX 6 AA6 ILE A 117 TYR A 127 1 11 HELIX 7 AA7 ASP A 129 LEU A 140 1 12 HELIX 8 AA8 GLY A 141 GLY A 145 5 5 HELIX 9 AA9 GLY A 146 LEU A 157 1 12 HELIX 10 AB1 PRO A 169 ARG A 173 5 5 HELIX 11 AB2 THR A 184 LEU A 197 1 14 HELIX 12 AB3 PRO A 202 ARG A 215 1 14 HELIX 13 AB4 ARG A 222 PHE A 227 1 6 HELIX 14 AB5 ARG A 267 GLY A 271 5 5 HELIX 15 AB6 ARG A 277 ALA A 293 1 17 HELIX 16 AB7 LEU B 30 ASP B 42 1 13 HELIX 17 AB8 CYS B 69 THR B 71 5 3 HELIX 18 AB9 PHE B 72 GLN B 83 1 12 HELIX 19 AC1 PRO B 85 ASP B 90 5 6 HELIX 20 AC2 THR B 96 ILE B 100 5 5 HELIX 21 AC3 VAL B 106 HIS B 110 5 5 HELIX 22 AC4 ILE B 117 TYR B 127 1 11 HELIX 23 AC5 ASP B 129 GLY B 141 1 13 HELIX 24 AC6 GLY B 142 GLY B 145 5 4 HELIX 25 AC7 GLY B 146 LEU B 157 1 12 HELIX 26 AC8 PRO B 169 ARG B 173 5 5 HELIX 27 AC9 THR B 184 LEU B 197 1 14 HELIX 28 AD1 PRO B 202 ARG B 215 1 14 HELIX 29 AD2 ARG B 222 PHE B 227 1 6 HELIX 30 AD3 ARG B 267 GLY B 271 5 5 HELIX 31 AD4 ARG B 277 ALA B 293 1 17 HELIX 32 AD5 LEU C 30 ASP C 42 1 13 HELIX 33 AD6 CYS C 69 THR C 71 5 3 HELIX 34 AD7 PHE C 72 GLN C 83 1 12 HELIX 35 AD8 PRO C 85 ASP C 90 5 6 HELIX 36 AD9 VAL C 106 HIS C 110 5 5 HELIX 37 AE1 ILE C 117 TYR C 127 1 11 HELIX 38 AE2 ASP C 129 LEU C 140 1 12 HELIX 39 AE3 GLY C 141 GLY C 145 5 5 HELIX 40 AE4 GLY C 146 LEU C 157 1 12 HELIX 41 AE5 PRO C 169 ARG C 173 5 5 HELIX 42 AE6 THR C 184 LEU C 197 1 14 HELIX 43 AE7 PRO C 202 ARG C 215 1 14 HELIX 44 AE8 ARG C 222 PHE C 227 1 6 HELIX 45 AE9 ARG C 277 ALA C 293 1 17 HELIX 46 AF1 LEU D 30 ASP D 42 1 13 HELIX 47 AF2 CYS D 69 THR D 71 5 3 HELIX 48 AF3 PHE D 72 ASN D 84 1 13 HELIX 49 AF4 PRO D 85 ASP D 90 5 6 HELIX 50 AF5 VAL D 106 HIS D 110 5 5 HELIX 51 AF6 ILE D 117 TYR D 127 1 11 HELIX 52 AF7 ASP D 129 LEU D 140 1 12 HELIX 53 AF8 GLY D 141 GLY D 145 5 5 HELIX 54 AF9 GLY D 146 LEU D 157 1 12 HELIX 55 AG1 PRO D 169 ARG D 173 5 5 HELIX 56 AG2 THR D 184 LEU D 197 1 14 HELIX 57 AG3 PRO D 202 ARG D 215 1 14 HELIX 58 AG4 ARG D 222 PHE D 227 1 6 HELIX 59 AG5 ARG D 267 GLY D 271 5 5 HELIX 60 AG6 ARG D 277 ALA D 293 1 17 SHEET 1 AA1 5 ILE A 58 TYR A 60 0 SHEET 2 AA1 5 ARG A 44 VAL A 49 -1 N VAL A 47 O TYR A 60 SHEET 3 AA1 5 PRO A 258 ASP A 266 -1 O MET A 264 N GLY A 46 SHEET 4 AA1 5 ALA A 245 TRP A 252 -1 N ALA A 249 O VAL A 261 SHEET 5 AA1 5 LYS A 232 THR A 239 -1 N GLY A 238 O ASN A 246 SHEET 1 AA2 2 PHE A 66 ALA A 67 0 SHEET 2 AA2 2 THR A 182 THR A 183 -1 O THR A 183 N PHE A 66 SHEET 1 AA3 2 LEU A 92 ILE A 93 0 SHEET 2 AA3 2 MET A 115 THR A 116 -1 O MET A 115 N ILE A 93 SHEET 1 AA4 5 ILE B 58 TYR B 60 0 SHEET 2 AA4 5 ARG B 44 VAL B 49 -1 N VAL B 47 O TYR B 60 SHEET 3 AA4 5 PRO B 258 ASP B 266 -1 O MET B 264 N GLY B 46 SHEET 4 AA4 5 ALA B 245 TRP B 252 -1 N VAL B 251 O TYR B 259 SHEET 5 AA4 5 LYS B 232 THR B 239 -1 N GLY B 238 O ASN B 246 SHEET 1 AA5 2 PHE B 66 ALA B 67 0 SHEET 2 AA5 2 THR B 182 THR B 183 -1 O THR B 183 N PHE B 66 SHEET 1 AA6 2 LEU B 92 ILE B 93 0 SHEET 2 AA6 2 MET B 115 THR B 116 -1 O MET B 115 N ILE B 93 SHEET 1 AA7 5 ILE C 58 TYR C 60 0 SHEET 2 AA7 5 ARG C 44 VAL C 49 -1 N VAL C 47 O TYR C 60 SHEET 3 AA7 5 PRO C 258 ASP C 266 -1 O MET C 264 N GLY C 46 SHEET 4 AA7 5 ALA C 245 TRP C 252 -1 N VAL C 251 O TYR C 259 SHEET 5 AA7 5 LYS C 232 THR C 239 -1 N GLY C 238 O ASN C 246 SHEET 1 AA8 2 PHE C 66 ALA C 67 0 SHEET 2 AA8 2 THR C 182 THR C 183 -1 O THR C 183 N PHE C 66 SHEET 1 AA9 2 LEU C 92 ILE C 93 0 SHEET 2 AA9 2 MET C 115 THR C 116 -1 O MET C 115 N ILE C 93 SHEET 1 AB1 5 ILE D 58 TYR D 60 0 SHEET 2 AB1 5 ARG D 44 VAL D 49 -1 N VAL D 47 O TYR D 60 SHEET 3 AB1 5 PRO D 258 ASP D 266 -1 O MET D 264 N GLY D 46 SHEET 4 AB1 5 ALA D 245 TRP D 252 -1 N VAL D 251 O TYR D 259 SHEET 5 AB1 5 LYS D 232 THR D 239 -1 N GLY D 238 O ASN D 246 SHEET 1 AB2 2 PHE D 66 ALA D 67 0 SHEET 2 AB2 2 THR D 182 THR D 183 -1 O THR D 183 N PHE D 66 SHEET 1 AB3 2 LEU D 92 ILE D 93 0 SHEET 2 AB3 2 MET D 115 THR D 116 -1 O MET D 115 N ILE D 93 CISPEP 1 GLU A 168 PRO A 169 0 3.28 CISPEP 2 GLU B 168 PRO B 169 0 3.79 CISPEP 3 GLU C 168 PRO C 169 0 1.97 CISPEP 4 GLU D 168 PRO D 169 0 2.79 SITE 1 AC1 7 SER A 70 SER A 128 THR A 218 THR A 237 SITE 2 AC1 7 GLY A 238 THR A 239 GLN B 109 SITE 1 AC2 18 GLN A 109 CYS B 69 SER B 70 SER B 128 SITE 2 AC2 18 PRO B 169 ASN B 172 ARG B 173 ARG B 222 SITE 3 AC2 18 LYS B 236 THR B 237 GLY B 238 THR B 239 SITE 4 AC2 18 GLY B 240 GLU B 278 PO4 B 302 HOH B 401 SITE 5 AC2 18 HOH B 412 HOH B 413 SITE 1 AC3 6 SER B 70 SER B 128 LYS B 236 THR B 237 SITE 2 AC3 6 THR B 239 9F2 B 301 SITE 1 AC4 5 SER C 70 SER C 128 THR C 237 GLY C 238 SITE 2 AC4 5 THR C 239 SITE 1 AC5 14 GLN C 109 SER D 70 SER D 128 PRO D 169 SITE 2 AC5 14 ASN D 172 ARG D 173 LYS D 236 THR D 237 SITE 3 AC5 14 GLY D 238 THR D 239 GLY D 240 PO4 D 302 SITE 4 AC5 14 HOH D 412 HOH D 416 SITE 1 AC6 6 SER D 70 SER D 128 THR D 237 GLY D 238 SITE 2 AC6 6 THR D 239 9F2 D 301 CRYST1 80.680 98.780 113.090 90.00 108.60 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012395 0.000000 0.004171 0.00000 SCALE2 0.000000 0.010124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009330 0.00000