HEADER IMMUNE SYSTEM 27-SEP-20 7K8N TITLE CRYSTAL STRUCTURE OF AN ANTI-SARS-COV-2 HUMAN NEUTRALIZING ANTIBODY TITLE 2 FAB FRAGMENT, C102 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C102 FAB HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C102 FAB LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS HUMAN NEUTRALIZING ANTIBODY, SARS-COV-2, RECEPTOR BINDING DOMAIN, KEYWDS 2 COVID-19, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.A.JETTE,C.O.BARNES,P.J.BJORKMAN REVDAT 4 18-OCT-23 7K8N 1 REMARK REVDAT 3 13-JAN-21 7K8N 1 JRNL REVDAT 2 28-OCT-20 7K8N 1 TITLE REVDAT 1 21-OCT-20 7K8N 0 JRNL AUTH C.O.BARNES,C.A.JETTE,M.E.ABERNATHY,K.A.DAM,S.R.ESSWEIN, JRNL AUTH 2 H.B.GRISTICK,A.G.MALYUTIN,N.G.SHARAF,K.E.HUEY-TUBMAN, JRNL AUTH 3 Y.E.LEE,D.F.ROBBIANI,M.C.NUSSENZWEIG,A.P.WEST JR., JRNL AUTH 4 P.J.BJORKMAN JRNL TITL SARS-COV-2 NEUTRALIZING ANTIBODY STRUCTURES INFORM JRNL TITL 2 THERAPEUTIC STRATEGIES. JRNL REF NATURE V. 588 682 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 33045718 JRNL DOI 10.1038/S41586-020-2852-1 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 116041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.230 REMARK 3 FREE R VALUE TEST SET COUNT : 3745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0400 - 4.9500 1.00 4158 142 0.1776 0.1698 REMARK 3 2 4.9400 - 3.9300 1.00 4175 138 0.1437 0.1780 REMARK 3 3 3.9300 - 3.4300 1.00 4148 143 0.1826 0.1672 REMARK 3 4 3.4300 - 3.1200 1.00 4183 135 0.2023 0.1918 REMARK 3 5 3.1200 - 2.9000 1.00 4156 135 0.2135 0.2540 REMARK 3 6 2.9000 - 2.7200 1.00 4161 141 0.2166 0.2152 REMARK 3 7 2.7200 - 2.5900 1.00 4151 140 0.2162 0.2440 REMARK 3 8 2.5900 - 2.4800 1.00 4149 135 0.2129 0.2149 REMARK 3 9 2.4800 - 2.3800 1.00 4177 144 0.2170 0.2087 REMARK 3 10 2.3800 - 2.3000 1.00 4164 141 0.2132 0.2720 REMARK 3 11 2.3000 - 2.2300 1.00 4140 141 0.2187 0.2586 REMARK 3 12 2.2300 - 2.1600 1.00 4159 134 0.2092 0.2549 REMARK 3 13 2.1600 - 2.1100 1.00 4151 140 0.2078 0.1891 REMARK 3 14 2.1100 - 2.0500 1.00 4174 138 0.2052 0.2616 REMARK 3 15 2.0500 - 2.0100 1.00 4167 141 0.2086 0.1945 REMARK 3 16 2.0100 - 1.9700 1.00 4160 137 0.2004 0.2469 REMARK 3 17 1.9600 - 1.9300 1.00 4115 140 0.2066 0.1893 REMARK 3 18 1.9300 - 1.8900 1.00 4182 136 0.2128 0.2454 REMARK 3 19 1.8900 - 1.8600 1.00 4152 136 0.2181 0.2148 REMARK 3 20 1.8600 - 1.8200 1.00 4200 143 0.2150 0.2320 REMARK 3 21 1.8200 - 1.7900 1.00 4136 134 0.2249 0.2749 REMARK 3 22 1.7900 - 1.7700 1.00 4179 139 0.2255 0.2489 REMARK 3 23 1.7700 - 1.7400 1.00 4156 142 0.2409 0.2601 REMARK 3 24 1.7400 - 1.7200 1.00 4146 139 0.2523 0.2720 REMARK 3 25 1.7200 - 1.6900 1.00 4167 141 0.2576 0.2315 REMARK 3 26 1.6900 - 1.6700 1.00 4144 138 0.2815 0.2882 REMARK 3 27 1.6700 - 1.6500 1.00 4146 132 0.3242 0.3569 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.187 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.977 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3380 REMARK 3 ANGLE : 1.443 4589 REMARK 3 CHIRALITY : 0.074 508 REMARK 3 PLANARITY : 0.010 585 REMARK 3 DIHEDRAL : 19.874 1206 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 112) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1626 48.7905 -18.4194 REMARK 3 T TENSOR REMARK 3 T11: 0.2325 T22: 0.3170 REMARK 3 T33: 0.1670 T12: 0.1303 REMARK 3 T13: 0.0128 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 3.4888 L22: 3.1827 REMARK 3 L33: 2.7197 L12: -0.6500 REMARK 3 L13: -2.2591 L23: 0.8503 REMARK 3 S TENSOR REMARK 3 S11: 0.3099 S12: 0.5104 S13: 0.1551 REMARK 3 S21: -0.0631 S22: -0.1809 S23: 0.0683 REMARK 3 S31: -0.4474 S32: -0.5438 S33: -0.0227 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 214) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2631 24.0197 -7.4900 REMARK 3 T TENSOR REMARK 3 T11: 0.4319 T22: 0.5335 REMARK 3 T33: 0.3989 T12: -0.1326 REMARK 3 T13: 0.0789 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 4.8376 L22: 3.2130 REMARK 3 L33: 1.8376 L12: 0.6455 REMARK 3 L13: -1.9240 L23: -1.8061 REMARK 3 S TENSOR REMARK 3 S11: -0.4301 S12: 1.0126 S13: -0.3286 REMARK 3 S21: -0.3430 S22: 0.4578 S23: 0.2317 REMARK 3 S31: 0.4134 S32: -0.5427 S33: -0.0483 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7278 58.7531 -1.2338 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.2126 REMARK 3 T33: 0.2176 T12: -0.0319 REMARK 3 T13: 0.0383 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 3.0531 L22: 2.6665 REMARK 3 L33: 3.5685 L12: 0.0978 REMARK 3 L13: -1.1999 L23: -1.5264 REMARK 3 S TENSOR REMARK 3 S11: 0.1258 S12: -0.0606 S13: 0.0975 REMARK 3 S21: -0.0637 S22: -0.2351 S23: -0.1799 REMARK 3 S31: -0.2757 S32: 0.3505 S33: 0.0661 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 213) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1676 23.1536 8.9946 REMARK 3 T TENSOR REMARK 3 T11: 0.3111 T22: 0.2397 REMARK 3 T33: 0.3880 T12: 0.0008 REMARK 3 T13: 0.0339 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.2479 L22: 3.8464 REMARK 3 L33: 2.5810 L12: -0.6184 REMARK 3 L13: -1.1452 L23: 0.7505 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: 0.0516 S13: -0.3232 REMARK 3 S21: -0.0527 S22: 0.0155 S23: -0.3230 REMARK 3 S31: 0.3893 S32: 0.1216 S33: -0.0069 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116041 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 38.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 7BZ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 20% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.90533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.95267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.42900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.47633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 182.38167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 145.90533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.95267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.47633 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 109.42900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 182.38167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 UNK A 131 REMARK 465 UNK A 132 REMARK 465 UNK A 133 REMARK 465 UNK A 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 32 O HOH A 901 1.34 REMARK 500 ND2 ASN A 32 O HOH A 901 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 34 CB MET A 34 CG 0.222 REMARK 500 TRP A 47 CB TRP A 47 CG -0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 99 -76.66 -100.78 REMARK 500 ASP A 144 64.68 64.24 REMARK 500 ALA B 51 -38.28 68.83 REMARK 500 ALA B 84 172.15 179.11 REMARK 500 ASN B 138 71.08 57.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 7K8N A 1 214 PDB 7K8N 7K8N 1 214 DBREF 7K8N B 1 213 PDB 7K8N 7K8N 1 213 SEQRES 1 A 218 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 A 218 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 218 PHE ILE VAL SER SER ASN TYR MET SER TRP VAL ARG GLN SEQRES 4 A 218 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL ILE TYR SEQRES 5 A 218 SER GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 A 218 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 A 218 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 A 218 VAL TYR TYR CYS ALA ARG ASP TYR GLY ASP TYR TYR PHE SEQRES 9 A 218 ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 A 218 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 A 218 SER SER LYS SER UNK UNK UNK UNK THR ALA ALA LEU GLY SEQRES 12 A 218 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 A 218 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 A 218 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 A 218 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 A 218 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 A 218 THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 1 B 214 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 B 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 B 214 GLN SER VAL SER SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 B 214 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 B 214 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 B 214 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 B 214 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 B 214 TYR GLY SER SER PRO ARG THR PHE GLY GLN GLY THR LYS SEQRES 9 B 214 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 B 214 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 B 214 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 B 214 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 B 214 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 B 214 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 B 214 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 B 214 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 B 214 SER PHE ASN ARG GLY GLU HET SO4 A 801 5 HET GOL A 802 14 HET PEG A 803 17 HET SO4 B 301 5 HET GOL B 302 14 HET GOL B 303 14 HET SO4 B 304 5 HET GOL B 305 14 HET GOL B 306 14 HET GOL B 307 14 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 5 PEG C4 H10 O3 FORMUL 13 HOH *101(H2 O) HELIX 1 AA1 ILE A 28 ASN A 32 5 5 HELIX 2 AA2 ARG A 83 THR A 87 5 5 HELIX 3 AA3 SER A 156 ALA A 158 5 3 HELIX 4 AA4 PRO A 185 LEU A 189 5 5 HELIX 5 AA5 LYS A 201 ASN A 204 5 4 HELIX 6 AA6 SER B 29 SER B 31 5 3 HELIX 7 AA7 GLU B 79 PHE B 83 5 5 HELIX 8 AA8 SER B 121 LYS B 126 1 6 HELIX 9 AA9 LYS B 183 LYS B 188 1 6 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA1 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ASP A 72 -1 N SER A 70 O TYR A 79 SHEET 1 AA2 6 GLY A 10 ILE A 12 0 SHEET 2 AA2 6 THR A 107 VAL A 111 1 O THR A 110 N ILE A 12 SHEET 3 AA2 6 ALA A 88 TYR A 96 -1 N ALA A 88 O VAL A 109 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 91 SHEET 5 AA2 6 GLU A 46 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 57 TYR A 59 -1 O PHE A 58 N VAL A 50 SHEET 1 AA3 4 GLY A 10 ILE A 12 0 SHEET 2 AA3 4 THR A 107 VAL A 111 1 O THR A 110 N ILE A 12 SHEET 3 AA3 4 ALA A 88 TYR A 96 -1 N ALA A 88 O VAL A 109 SHEET 4 AA3 4 TYR A 100 TRP A 103 -1 O TYR A 100 N TYR A 96 SHEET 1 AA4 4 SER A 120 LEU A 124 0 SHEET 2 AA4 4 ALA A 136 TYR A 145 -1 O LEU A 141 N PHE A 122 SHEET 3 AA4 4 TYR A 176 VAL A 184 -1 O LEU A 178 N VAL A 142 SHEET 4 AA4 4 VAL A 163 THR A 165 -1 N HIS A 164 O VAL A 181 SHEET 1 AA5 4 SER A 120 LEU A 124 0 SHEET 2 AA5 4 ALA A 136 TYR A 145 -1 O LEU A 141 N PHE A 122 SHEET 3 AA5 4 TYR A 176 VAL A 184 -1 O LEU A 178 N VAL A 142 SHEET 4 AA5 4 VAL A 169 LEU A 170 -1 N VAL A 169 O SER A 177 SHEET 1 AA6 3 THR A 151 TRP A 154 0 SHEET 2 AA6 3 ILE A 195 HIS A 200 -1 O ASN A 197 N SER A 153 SHEET 3 AA6 3 THR A 205 ARG A 210 -1 O VAL A 207 N VAL A 198 SHEET 1 AA7 3 LEU B 4 SER B 7 0 SHEET 2 AA7 3 ALA B 19 VAL B 28 -1 O ARG B 24 N THR B 5 SHEET 3 AA7 3 PHE B 62 ILE B 75 -1 O LEU B 73 N LEU B 21 SHEET 1 AA8 6 THR B 10 LEU B 13 0 SHEET 2 AA8 6 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA8 6 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA8 6 LEU B 33 GLN B 38 -1 N ALA B 34 O GLN B 89 SHEET 5 AA8 6 ARG B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA8 6 SER B 53 ARG B 54 -1 O SER B 53 N TYR B 49 SHEET 1 AA9 4 THR B 10 LEU B 13 0 SHEET 2 AA9 4 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA9 4 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 AA9 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 AB1 4 SER B 114 PHE B 118 0 SHEET 2 AB1 4 THR B 129 PHE B 139 -1 O ASN B 137 N SER B 114 SHEET 3 AB1 4 TYR B 173 SER B 182 -1 O LEU B 181 N ALA B 130 SHEET 4 AB1 4 SER B 159 VAL B 163 -1 N SER B 162 O SER B 176 SHEET 1 AB2 4 ALA B 153 LEU B 154 0 SHEET 2 AB2 4 LYS B 145 VAL B 150 -1 N VAL B 150 O ALA B 153 SHEET 3 AB2 4 VAL B 191 THR B 197 -1 O GLU B 195 N GLN B 147 SHEET 4 AB2 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.16 SSBOND 2 CYS A 140 CYS A 196 1555 1555 2.04 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.14 SSBOND 4 CYS B 134 CYS B 194 1555 1555 2.03 CISPEP 1 PHE A 146 PRO A 147 0 -6.76 CISPEP 2 GLU A 148 PRO A 149 0 -6.47 CISPEP 3 SER B 7 PRO B 8 0 -8.70 CISPEP 4 SER B 94 PRO B 95 0 1.45 CISPEP 5 TYR B 140 PRO B 141 0 -0.32 CRYST1 88.813 88.813 218.858 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011260 0.006501 0.000000 0.00000 SCALE2 0.000000 0.013001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004569 0.00000