HEADER IMMUNE SYSTEM 27-SEP-20 7K8P TITLE CRYSTAL STRUCTURE OF AN ANTI-SARS-COV-2 HUMAN NEUTRALIZING ANTIBODY TITLE 2 FAB FRAGMENT, C110 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C110 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C110 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS HUMAN NEUTRALIZING ANTIBODY, SARS-COV-2, RECEPTOR BINDING DOMAIN, KEYWDS 2 COVID-19, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.A.DAM,C.O.BARNES,P.J.BJORKMAN REVDAT 3 18-OCT-23 7K8P 1 REMARK REVDAT 2 13-JAN-21 7K8P 1 JRNL REVDAT 1 21-OCT-20 7K8P 0 JRNL AUTH C.O.BARNES,C.A.JETTE,M.E.ABERNATHY,K.A.DAM,S.R.ESSWEIN, JRNL AUTH 2 H.B.GRISTICK,A.G.MALYUTIN,N.G.SHARAF,K.E.HUEY-TUBMAN, JRNL AUTH 3 Y.E.LEE,D.F.ROBBIANI,M.C.NUSSENZWEIG,A.P.WEST JR., JRNL AUTH 4 P.J.BJORKMAN JRNL TITL SARS-COV-2 NEUTRALIZING ANTIBODY STRUCTURES INFORM JRNL TITL 2 THERAPEUTIC STRATEGIES. JRNL REF NATURE V. 588 682 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 33045718 JRNL DOI 10.1038/S41586-020-2852-1 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 42862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6900 - 4.5300 0.98 2595 142 0.1676 0.1857 REMARK 3 2 4.5300 - 3.6000 1.00 2591 127 0.1636 0.1770 REMARK 3 3 3.6000 - 3.1400 1.00 2575 147 0.1984 0.2528 REMARK 3 4 3.1400 - 2.8600 0.96 2483 133 0.2105 0.2691 REMARK 3 5 2.8600 - 2.6500 0.99 2559 143 0.2196 0.2284 REMARK 3 6 2.6500 - 2.5000 0.99 2552 146 0.2158 0.2448 REMARK 3 7 2.5000 - 2.3700 0.99 2562 125 0.2137 0.2501 REMARK 3 8 2.3700 - 2.2700 0.99 2533 136 0.2197 0.2649 REMARK 3 9 2.2700 - 2.1800 1.00 2546 141 0.1972 0.2334 REMARK 3 10 2.1800 - 2.1100 0.98 2500 129 0.1988 0.2380 REMARK 3 11 2.1100 - 2.0400 0.98 2529 134 0.1934 0.2126 REMARK 3 12 2.0400 - 1.9800 0.99 2507 132 0.2107 0.2461 REMARK 3 13 1.9800 - 1.9300 0.99 2553 126 0.2146 0.2618 REMARK 3 14 1.9300 - 1.8800 0.99 2543 134 0.2233 0.2686 REMARK 3 15 1.8800 - 1.8400 1.00 2540 139 0.2517 0.3267 REMARK 3 16 1.8400 - 1.8000 0.99 2513 147 0.2779 0.3068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.201 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.608 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3255 REMARK 3 ANGLE : 1.210 4448 REMARK 3 CHIRALITY : 0.094 504 REMARK 3 PLANARITY : 0.008 568 REMARK 3 DIHEDRAL : 13.529 455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8263 -26.6527 -6.3973 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.1333 REMARK 3 T33: 0.2339 T12: 0.0033 REMARK 3 T13: -0.0229 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 2.9080 L22: 4.6278 REMARK 3 L33: 2.6937 L12: -2.3577 REMARK 3 L13: 1.5478 L23: -2.8724 REMARK 3 S TENSOR REMARK 3 S11: 0.2634 S12: 0.1841 S13: -0.3956 REMARK 3 S21: -0.5027 S22: -0.2496 S23: 0.6385 REMARK 3 S31: 0.1727 S32: 0.0869 S33: -0.0151 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3634 -31.2994 2.8082 REMARK 3 T TENSOR REMARK 3 T11: 0.1714 T22: 0.1242 REMARK 3 T33: 0.1857 T12: -0.0069 REMARK 3 T13: -0.0206 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.6617 L22: 0.8172 REMARK 3 L33: 1.1061 L12: -0.2723 REMARK 3 L13: -0.4391 L23: 0.7407 REMARK 3 S TENSOR REMARK 3 S11: 0.1764 S12: -0.0667 S13: -0.1051 REMARK 3 S21: -0.0891 S22: -0.1378 S23: 0.0436 REMARK 3 S31: 0.0740 S32: 0.0297 S33: -0.0264 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 41 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7171 -23.1281 3.2281 REMARK 3 T TENSOR REMARK 3 T11: 0.2178 T22: 0.1195 REMARK 3 T33: 0.2194 T12: -0.0066 REMARK 3 T13: 0.0086 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 1.7982 L22: 1.9761 REMARK 3 L33: 1.7026 L12: -0.3960 REMARK 3 L13: 0.0084 L23: -1.2253 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: -0.0751 S13: 0.2028 REMARK 3 S21: 0.2312 S22: -0.0612 S23: -0.0150 REMARK 3 S31: -0.2118 S32: 0.0486 S33: -0.0087 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 92 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8885 -32.0555 3.5599 REMARK 3 T TENSOR REMARK 3 T11: 0.2227 T22: 0.2136 REMARK 3 T33: 0.2648 T12: -0.0184 REMARK 3 T13: -0.0136 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 3.2375 L22: 4.3901 REMARK 3 L33: 1.1776 L12: -0.5859 REMARK 3 L13: 0.2388 L23: -0.5719 REMARK 3 S TENSOR REMARK 3 S11: 0.0828 S12: -0.4836 S13: -0.3471 REMARK 3 S21: 0.5149 S22: -0.0756 S23: -0.2728 REMARK 3 S31: 0.1528 S32: 0.0993 S33: -0.0890 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 115 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7353 -21.0849 -32.4191 REMARK 3 T TENSOR REMARK 3 T11: 0.2479 T22: 0.4555 REMARK 3 T33: 0.2312 T12: -0.0326 REMARK 3 T13: 0.0059 T23: -0.0931 REMARK 3 L TENSOR REMARK 3 L11: 3.7253 L22: 0.8240 REMARK 3 L33: 1.7822 L12: -0.4905 REMARK 3 L13: -1.8865 L23: -0.1780 REMARK 3 S TENSOR REMARK 3 S11: -0.1973 S12: 1.0228 S13: -0.3812 REMARK 3 S21: -0.0606 S22: -0.0648 S23: 0.0369 REMARK 3 S31: 0.1731 S32: -0.3848 S33: 0.2102 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1358 -26.0144 -6.2029 REMARK 3 T TENSOR REMARK 3 T11: 0.2378 T22: 0.3377 REMARK 3 T33: 0.3831 T12: -0.0288 REMARK 3 T13: -0.0138 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 1.9730 L22: 1.9400 REMARK 3 L33: 4.9957 L12: -0.8519 REMARK 3 L13: -1.5050 L23: 1.8844 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.1402 S13: 0.2020 REMARK 3 S21: 0.1102 S22: -0.0238 S23: -0.3033 REMARK 3 S31: 0.0052 S32: 0.4998 S33: 0.0050 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2261 -31.6894 1.6244 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.1601 REMARK 3 T33: 0.2219 T12: 0.0016 REMARK 3 T13: -0.0178 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 4.7827 L22: 3.0817 REMARK 3 L33: 4.9550 L12: -0.2028 REMARK 3 L13: -0.0501 L23: 0.5658 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.2344 S13: -0.0075 REMARK 3 S21: 0.1955 S22: -0.0963 S23: -0.1499 REMARK 3 S31: 0.1039 S32: 0.2361 S33: 0.1028 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 62 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8293 -30.6808 3.3461 REMARK 3 T TENSOR REMARK 3 T11: 0.1616 T22: 0.3193 REMARK 3 T33: 0.3273 T12: -0.0110 REMARK 3 T13: -0.0260 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 3.8064 L22: 3.5186 REMARK 3 L33: 4.4574 L12: -0.8814 REMARK 3 L13: 0.4037 L23: 0.8260 REMARK 3 S TENSOR REMARK 3 S11: -0.1352 S12: -0.2979 S13: 0.4842 REMARK 3 S21: 0.3943 S22: 0.0871 S23: -0.3807 REMARK 3 S31: 0.1838 S32: 0.6742 S33: 0.0305 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5950 -31.8686 -6.7599 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.2373 REMARK 3 T33: 0.2918 T12: 0.0188 REMARK 3 T13: -0.0070 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.2500 L22: 2.6329 REMARK 3 L33: 4.7800 L12: -1.2204 REMARK 3 L13: -2.2521 L23: 0.5722 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: 0.0779 S13: -0.2457 REMARK 3 S21: 0.0227 S22: -0.1670 S23: -0.2685 REMARK 3 S31: 0.3719 S32: 0.4303 S33: 0.1746 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 91 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8830 -24.3064 -6.4729 REMARK 3 T TENSOR REMARK 3 T11: 0.2082 T22: 0.2196 REMARK 3 T33: 0.2561 T12: -0.0071 REMARK 3 T13: -0.0362 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.2599 L22: 0.6642 REMARK 3 L33: 5.0577 L12: 0.2297 REMARK 3 L13: -1.7106 L23: -0.5137 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0630 S13: 0.0224 REMARK 3 S21: 0.0399 S22: -0.0669 S23: 0.0008 REMARK 3 S31: 0.0005 S32: 0.2345 S33: 0.0298 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7331 -9.9110 -30.5894 REMARK 3 T TENSOR REMARK 3 T11: 0.2733 T22: 0.3207 REMARK 3 T33: 0.3089 T12: 0.0073 REMARK 3 T13: 0.0017 T23: 0.0849 REMARK 3 L TENSOR REMARK 3 L11: 4.6959 L22: 3.7240 REMARK 3 L33: 1.5446 L12: -0.4076 REMARK 3 L13: -0.7884 L23: -0.2983 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: 0.4613 S13: 0.7216 REMARK 3 S21: 0.0149 S22: 0.1643 S23: 0.2425 REMARK 3 S31: -0.4051 S32: -0.1589 S33: -0.0786 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 164 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3552 -10.8147 -31.5013 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: 0.2937 REMARK 3 T33: 0.3349 T12: -0.0046 REMARK 3 T13: -0.0134 T23: 0.0767 REMARK 3 L TENSOR REMARK 3 L11: 4.3769 L22: 3.6361 REMARK 3 L33: 2.9447 L12: -1.4340 REMARK 3 L13: 0.6371 L23: -2.0359 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: 0.4282 S13: 0.7533 REMARK 3 S21: -0.0232 S22: 0.0426 S23: -0.0768 REMARK 3 S31: -0.3295 S32: 0.0008 S33: 0.0963 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42891 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 1.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6XCA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM TARTRATE DIBASIC REMARK 280 DIHYDRATE, 20 % W/V PEG3350, PH 7.3, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.36900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 190 REMARK 465 THR H 191 REMARK 465 GLN H 192 REMARK 465 THR H 193 REMARK 465 PRO H 213 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 ASP L 1 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 GLN H 5 CG CD OE1 NE2 REMARK 470 LYS H 13 CG CD CE NZ REMARK 470 LYS H 19 CG CD CE NZ REMARK 470 LYS H 23 CG CD CE NZ REMARK 470 MET H 48 CG SD CE REMARK 470 ARG H 58 CG CD NE CZ NH1 NH2 REMARK 470 SER H 76 OG REMARK 470 LYS H 83 CG CD CE NZ REMARK 470 ARG H 100A CG CD NE CZ NH1 NH2 REMARK 470 PRO H 134 CB CG CD REMARK 470 LEU H 189 CG CD1 CD2 REMARK 470 ILE H 195 CG1 CG2 CD1 REMARK 470 LYS H 201 CG CD CE NZ REMARK 470 ARG H 210 CG CD NE CZ NH1 NH2 REMARK 470 GLU H 212 CG CD OE1 OE2 REMARK 470 GLN L 3 CG CD OE1 NE2 REMARK 470 LYS L 45 CG CD CE NZ REMARK 470 GLU L 55 CG CD OE1 OE2 REMARK 470 GLU L 70 CG CD OE1 OE2 REMARK 470 GLN L 79 CG CD OE1 NE2 REMARK 470 GLU L 105 CG CD OE1 OE2 REMARK 470 LYS L 126 CG CD CE NZ REMARK 470 LYS L 188 CG CD CE NZ REMARK 470 LYS L 190 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 CYS L 194 CA CB SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 397 O HOH L 356 2.18 REMARK 500 O HOH H 304 O HOH H 326 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU L 33 CB - CG - CD2 ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 30 -133.93 53.04 REMARK 500 ALA L 51 -39.60 76.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 7K8P H 1 225 PDB 7K8P 7K8P 1 225 DBREF 7K8P L 1 214 PDB 7K8P 7K8P 1 214 SEQRES 1 H 240 GLN VAL GLN LEU GLN GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 240 PRO GLY GLU SER LEU LYS ILE SER CYS LYS GLY SER GLY SEQRES 3 H 240 TYR SER PHE THR SER TYR TRP ILE GLY TRP VAL ARG GLN SEQRES 4 H 240 MET PRO GLY LYS GLY LEU GLU TRP MET GLY ILE ILE TYR SEQRES 5 H 240 PRO GLY ASP SER ASP THR ARG TYR SER PRO SER PHE GLN SEQRES 6 H 240 GLY GLN VAL THR ILE SER ALA ASP LYS SER ILE SER THR SEQRES 7 H 240 ALA TYR MET GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 240 ALA MET TYR TYR CYS ALA ARG SER PHE ARG ASP ASP PRO SEQRES 9 H 240 ARG ILE ALA VAL ALA GLY PRO ALA ASP ALA PHE ASP ILE SEQRES 10 H 240 TRP GLY GLN GLY THR MET VAL THR VAL SER SER ALA SER SEQRES 11 H 240 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 12 H 240 LYS SER THR SER GLY PRO THR ALA ALA LEU GLY CYS LEU SEQRES 13 H 240 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 14 H 240 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 H 240 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 H 240 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 H 240 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 H 240 VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP LYS THR SEQRES 19 H 240 HIS HIS HIS HIS HIS HIS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER THR LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN SER ILE SER TYR TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR GLN ALA SER SEQRES 5 L 214 SER LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLU SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO ASP ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ASN SER TYR PRO TYR THR PHE GLY GLN GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS FORMUL 3 HOH *170(H2 O) HELIX 1 AA1 SER H 28 TYR H 32 5 5 HELIX 2 AA2 LYS H 73 ILE H 75 5 3 HELIX 3 AA3 LYS H 83 THR H 87 5 5 HELIX 4 AA4 SER H 156 ALA H 158 5 3 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 GLN L 79 PHE L 83 5 5 HELIX 7 AA7 SER L 121 LYS L 126 1 6 HELIX 8 AA8 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA1 4 THR H 77 TRP H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 SER H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 ILE H 34 GLN H 39 -1 N GLY H 35 O ALA H 93 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O ILE H 51 N ILE H 34 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ARG H 58 N ILE H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 4 ALA H 88 SER H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 PHE H 100K TRP H 103 -1 O ILE H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA7 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 THR L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA9 4 THR L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 HIS L 198 -1 O ALA L 193 N LYS L 149 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.10 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 PHE H 146 PRO H 147 0 -8.82 CISPEP 2 GLU H 148 PRO H 149 0 -0.88 CISPEP 3 SER L 7 PRO L 8 0 -10.39 CISPEP 4 TYR L 94 PRO L 95 0 -3.01 CISPEP 5 TYR L 140 PRO L 141 0 4.32 CRYST1 48.498 62.738 78.423 90.00 97.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020619 0.000000 0.002718 0.00000 SCALE2 0.000000 0.015939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012862 0.00000