HEADER IMMUNE SYSTEM 27-SEP-20 7K8Q TITLE CRYSTAL STRUCTURE OF AN ANTI-SARS-COV-2 HUMAN NEUTRALIZING ANTIBODY TITLE 2 FAB FRAGMENT, C121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C121 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C121 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS HUMAN NEUTRALIZING ANTIBODY, SARS-COV-2, RECEPTOR BINDING DOMAIN, KEYWDS 2 COVID-19, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.E.ABERNATHY,C.O.BARNES,P.J.BJORKMAN REVDAT 4 18-OCT-23 7K8Q 1 REMARK REVDAT 3 13-JAN-21 7K8Q 1 JRNL REVDAT 2 28-OCT-20 7K8Q 1 TITLE REVDAT 1 21-OCT-20 7K8Q 0 JRNL AUTH C.O.BARNES,C.A.JETTE,M.E.ABERNATHY,K.A.DAM,S.R.ESSWEIN, JRNL AUTH 2 H.B.GRISTICK,A.G.MALYUTIN,N.G.SHARAF,K.E.HUEY-TUBMAN, JRNL AUTH 3 Y.E.LEE,D.F.ROBBIANI,M.C.NUSSENZWEIG,A.P.WEST JR., JRNL AUTH 4 P.J.BJORKMAN JRNL TITL SARS-COV-2 NEUTRALIZING ANTIBODY STRUCTURES INFORM JRNL TITL 2 THERAPEUTIC STRATEGIES. JRNL REF NATURE V. 588 682 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 33045718 JRNL DOI 10.1038/S41586-020-2852-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 42233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3600 - 4.9300 0.98 3014 152 0.1634 0.2067 REMARK 3 2 4.9300 - 3.9200 1.00 2825 136 0.1405 0.1533 REMARK 3 3 3.9100 - 3.4200 0.98 2703 147 0.1893 0.2329 REMARK 3 4 3.4200 - 3.1100 1.00 2704 169 0.2315 0.2725 REMARK 3 5 3.1100 - 2.8900 1.00 2729 129 0.2533 0.2745 REMARK 3 6 2.8900 - 2.7200 1.00 2675 145 0.2543 0.2890 REMARK 3 7 2.7200 - 2.5800 0.99 2639 144 0.2570 0.2778 REMARK 3 8 2.5800 - 2.4700 0.98 2623 123 0.2652 0.3258 REMARK 3 9 2.4700 - 2.3700 0.99 2642 128 0.2513 0.2700 REMARK 3 10 2.3700 - 2.2900 0.99 2630 142 0.2807 0.3415 REMARK 3 11 2.2900 - 2.2200 0.99 2628 140 0.2883 0.3678 REMARK 3 12 2.2200 - 2.1600 0.99 2614 140 0.2951 0.3450 REMARK 3 13 2.1600 - 2.1000 0.99 2583 128 0.2904 0.3500 REMARK 3 14 2.1000 - 2.0500 0.99 2645 120 0.3287 0.3858 REMARK 3 15 2.0500 - 2.0000 0.95 2520 116 0.3157 0.3214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.646 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3333 REMARK 3 ANGLE : 0.996 4544 REMARK 3 CHIRALITY : 0.062 513 REMARK 3 PLANARITY : 0.006 577 REMARK 3 DIHEDRAL : 21.376 470 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8823 5.8324 -15.2779 REMARK 3 T TENSOR REMARK 3 T11: 0.4829 T22: 0.4182 REMARK 3 T33: 0.4636 T12: -0.0182 REMARK 3 T13: 0.0451 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 5.2642 L22: 3.2658 REMARK 3 L33: 3.0142 L12: 4.1433 REMARK 3 L13: -1.7558 L23: -1.4713 REMARK 3 S TENSOR REMARK 3 S11: 0.3236 S12: -0.4585 S13: -0.0405 REMARK 3 S21: 0.2131 S22: -0.4747 S23: -0.7281 REMARK 3 S31: -0.2239 S32: 0.3317 S33: 0.0285 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1224 -4.8035 -19.0408 REMARK 3 T TENSOR REMARK 3 T11: 0.4594 T22: 0.4879 REMARK 3 T33: 0.3805 T12: 0.0038 REMARK 3 T13: 0.0586 T23: -0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.6913 L22: 5.3729 REMARK 3 L33: 1.1677 L12: 0.6269 REMARK 3 L13: -0.0620 L23: -0.3866 REMARK 3 S TENSOR REMARK 3 S11: 0.1342 S12: -0.0957 S13: -0.2683 REMARK 3 S21: 0.3587 S22: -0.2571 S23: -0.3316 REMARK 3 S31: -0.1414 S32: 0.0536 S33: 0.1441 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 40 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2863 0.6497 -28.4167 REMARK 3 T TENSOR REMARK 3 T11: 0.4703 T22: 0.4315 REMARK 3 T33: 0.3465 T12: -0.0043 REMARK 3 T13: 0.0646 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 3.1210 L22: 2.9005 REMARK 3 L33: 3.1401 L12: 1.1650 REMARK 3 L13: 0.0064 L23: -0.4193 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: 0.1325 S13: 0.6133 REMARK 3 S21: -0.3997 S22: 0.0722 S23: -0.1802 REMARK 3 S31: -0.6306 S32: -0.1640 S33: -0.0320 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 65 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9708 1.3948 -24.3438 REMARK 3 T TENSOR REMARK 3 T11: 0.4285 T22: 0.5711 REMARK 3 T33: 0.4036 T12: -0.0498 REMARK 3 T13: 0.0989 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 3.6486 L22: 3.6861 REMARK 3 L33: 1.6391 L12: -0.6719 REMARK 3 L13: 0.1979 L23: 2.3827 REMARK 3 S TENSOR REMARK 3 S11: 0.4049 S12: 0.0608 S13: -0.0235 REMARK 3 S21: -0.1434 S22: 0.0249 S23: -0.2452 REMARK 3 S31: -0.2067 S32: 0.3284 S33: -0.4214 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7923 -1.5826 -21.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.4895 T22: 0.5283 REMARK 3 T33: 0.3285 T12: -0.0103 REMARK 3 T13: 0.0809 T23: -0.0849 REMARK 3 L TENSOR REMARK 3 L11: 1.7590 L22: 5.2412 REMARK 3 L33: 0.7758 L12: 0.4841 REMARK 3 L13: 0.2101 L23: 1.6466 REMARK 3 S TENSOR REMARK 3 S11: 0.3189 S12: -0.1179 S13: -0.0088 REMARK 3 S21: 0.1063 S22: -0.1245 S23: -0.8472 REMARK 3 S31: 0.0700 S32: -0.1406 S33: -0.1074 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 101 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0641 19.6743 -6.9875 REMARK 3 T TENSOR REMARK 3 T11: 0.3557 T22: 0.4373 REMARK 3 T33: 0.3925 T12: -0.0037 REMARK 3 T13: 0.0517 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.6899 L22: 1.9833 REMARK 3 L33: 1.1773 L12: -0.9432 REMARK 3 L13: -0.2981 L23: 1.3836 REMARK 3 S TENSOR REMARK 3 S11: -0.1442 S12: 0.1156 S13: 0.1664 REMARK 3 S21: -0.0473 S22: 0.2049 S23: -0.0927 REMARK 3 S31: 0.0007 S32: 0.0551 S33: -0.0666 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 140 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7934 23.5200 0.6644 REMARK 3 T TENSOR REMARK 3 T11: 0.3808 T22: 0.3748 REMARK 3 T33: 0.5127 T12: -0.0321 REMARK 3 T13: -0.0086 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 3.2911 L22: 1.9562 REMARK 3 L33: 4.1423 L12: -0.3223 REMARK 3 L13: -1.2521 L23: 0.5181 REMARK 3 S TENSOR REMARK 3 S11: -0.2357 S12: 0.2048 S13: -0.0116 REMARK 3 S21: -0.2347 S22: 0.0160 S23: -0.3310 REMARK 3 S31: 0.1071 S32: -0.1059 S33: -0.0126 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 163 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1514 25.1010 -6.6857 REMARK 3 T TENSOR REMARK 3 T11: 0.3951 T22: 0.3823 REMARK 3 T33: 0.3887 T12: -0.0563 REMARK 3 T13: -0.0098 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.5164 L22: 2.4423 REMARK 3 L33: 4.4506 L12: -1.4560 REMARK 3 L13: -0.1652 L23: 0.0981 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: 0.6126 S13: 0.2108 REMARK 3 S21: -0.5829 S22: 0.1757 S23: -0.2618 REMARK 3 S31: 0.2816 S32: -0.4175 S33: 0.0596 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 183 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8916 26.8973 7.8068 REMARK 3 T TENSOR REMARK 3 T11: 0.3665 T22: 0.2504 REMARK 3 T33: 0.4504 T12: 0.0414 REMARK 3 T13: -0.0794 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 5.1060 L22: 2.2560 REMARK 3 L33: 6.6168 L12: 0.8162 REMARK 3 L13: -1.3005 L23: 0.7887 REMARK 3 S TENSOR REMARK 3 S11: -0.1850 S12: -0.2904 S13: -0.2483 REMARK 3 S21: 0.2568 S22: 0.2233 S23: -0.3833 REMARK 3 S31: -0.0651 S32: 0.4901 S33: -0.0227 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 211 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6314 35.1866 11.3667 REMARK 3 T TENSOR REMARK 3 T11: 0.6705 T22: 0.4589 REMARK 3 T33: 0.5572 T12: -0.0231 REMARK 3 T13: -0.0400 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 4.5972 L22: 8.7724 REMARK 3 L33: 4.6973 L12: -5.5089 REMARK 3 L13: -3.0570 L23: 1.6833 REMARK 3 S TENSOR REMARK 3 S11: 0.5943 S12: -1.0543 S13: 0.0710 REMARK 3 S21: 1.7130 S22: -0.1731 S23: -1.0994 REMARK 3 S31: -0.8294 S32: -0.0421 S33: -0.3733 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.4161 2.6823 -22.0633 REMARK 3 T TENSOR REMARK 3 T11: 0.4706 T22: 0.6127 REMARK 3 T33: 0.6909 T12: 0.0486 REMARK 3 T13: 0.0159 T23: -0.1660 REMARK 3 L TENSOR REMARK 3 L11: 1.2564 L22: 5.5007 REMARK 3 L33: 5.3014 L12: 0.1478 REMARK 3 L13: 1.5768 L23: -0.5332 REMARK 3 S TENSOR REMARK 3 S11: 0.4530 S12: 0.3751 S13: 0.2362 REMARK 3 S21: -0.0076 S22: -0.5607 S23: 0.9145 REMARK 3 S31: -0.5521 S32: -0.7664 S33: 0.2099 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 24 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4777 -3.9786 -21.0153 REMARK 3 T TENSOR REMARK 3 T11: 0.3809 T22: 0.4906 REMARK 3 T33: 0.4363 T12: 0.0058 REMARK 3 T13: 0.0812 T23: -0.1267 REMARK 3 L TENSOR REMARK 3 L11: 2.2871 L22: 2.9411 REMARK 3 L33: 1.8573 L12: 0.0264 REMARK 3 L13: -0.2717 L23: 0.3648 REMARK 3 S TENSOR REMARK 3 S11: 0.1072 S12: -0.0579 S13: 0.1392 REMARK 3 S21: 0.1948 S22: -0.1091 S23: 0.4579 REMARK 3 S31: -0.0884 S32: -0.2980 S33: -0.0081 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 105 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.7462 20.4303 -4.0940 REMARK 3 T TENSOR REMARK 3 T11: 0.4388 T22: 0.4666 REMARK 3 T33: 0.6209 T12: 0.0212 REMARK 3 T13: 0.0916 T23: -0.1088 REMARK 3 L TENSOR REMARK 3 L11: 1.1476 L22: 4.3796 REMARK 3 L33: 2.5827 L12: 1.8320 REMARK 3 L13: 1.1365 L23: 3.2165 REMARK 3 S TENSOR REMARK 3 S11: 0.2631 S12: -0.0905 S13: -0.5511 REMARK 3 S21: 1.2577 S22: -0.4941 S23: 0.3116 REMARK 3 S31: 0.5839 S32: -0.1264 S33: 0.6070 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 118 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0234 34.0027 -7.4378 REMARK 3 T TENSOR REMARK 3 T11: 0.3146 T22: 0.3489 REMARK 3 T33: 0.3593 T12: 0.0410 REMARK 3 T13: -0.0043 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 7.2123 L22: 5.5999 REMARK 3 L33: 3.3440 L12: 0.7191 REMARK 3 L13: 0.4492 L23: 1.1404 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: 0.4692 S13: 0.1483 REMARK 3 S21: -0.0816 S22: -0.1927 S23: -0.6718 REMARK 3 S31: -0.3050 S32: -0.0533 S33: 0.1569 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000251585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42233 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 26.30 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5T3Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE, 20% PEG3350, REMARK 280 PH 5.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 269.89600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.94800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 202.42200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.47400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 337.37000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 269.89600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 134.94800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.47400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 202.42200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 337.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 129 REMARK 465 LYS H 130 REMARK 465 SER H 131 REMARK 465 THR H 132 REMARK 465 SER H 133 REMARK 465 LYS H 215 REMARK 465 SER H 216 REMARK 465 CYS H 217 REMARK 465 ASP H 218 REMARK 465 LYS H 219 REMARK 465 THR H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN L 1 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 145 68.58 67.00 REMARK 500 ASP L 27A -81.33 -127.77 REMARK 500 ASN L 30 58.22 -101.59 REMARK 500 SER L 51 -0.63 -151.85 REMARK 500 LEU L 77 130.50 -37.76 REMARK 500 ALA L 83 -178.19 179.59 REMARK 500 ASN L 128 33.64 72.71 REMARK 500 ASP L 151 -108.65 53.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 7K8Q H 1 226 PDB 7K8Q 7K8Q 1 226 DBREF 7K8Q L 1 212 PDB 7K8Q 7K8Q 1 212 SEQRES 1 H 241 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 241 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 241 TYR THR PHE THR GLY TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 241 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 H 241 PRO VAL SER GLY GLY THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 241 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 241 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 241 ALA VAL TYR TYR CYS ALA ARG ALA PRO LEU PHE PRO THR SEQRES 9 H 241 GLY VAL LEU ALA GLY ASP TYR TYR TYR TYR GLY MET ASP SEQRES 10 H 241 VAL TRP GLY GLN GLY THR THR VAL THR VAL SER SER ALA SEQRES 11 H 241 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 12 H 241 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 13 H 241 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 14 H 241 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 15 H 241 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 16 H 241 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 17 H 241 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 18 H 241 LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP LYS SEQRES 19 H 241 THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 216 GLN SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 L 216 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 L 216 SER ASP VAL GLY SER TYR ASN LEU VAL SER TRP TYR GLN SEQRES 4 L 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR GLU SEQRES 5 L 216 GLY SER LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS CYS SEQRES 8 L 216 SER TYR ALA GLY SER SER THR LEU VAL PHE GLY GLY GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER HET GOL H 301 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *12(H2 O) HELIX 1 AA1 THR H 28 THR H 30 5 3 HELIX 2 AA2 GLN H 61 GLN H 64 5 4 HELIX 3 AA3 THR H 73 ILE H 75 5 3 HELIX 4 AA4 ARG H 83 THR H 87 5 5 HELIX 5 AA5 SER H 157 ALA H 159 5 3 HELIX 6 AA6 SER H 188 THR H 192 5 5 HELIX 7 AA7 LYS H 202 ASN H 205 5 4 HELIX 8 AA8 GLN L 78 GLU L 82 5 5 HELIX 9 AA9 SER L 121 GLN L 126 1 6 HELIX 10 AB1 THR L 181 HIS L 188 1 8 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 108 VAL H 112 1 O THR H 109 N GLU H 10 SHEET 3 AA2 6 ALA H 88 PRO H 96 -1 N TYR H 90 O THR H 108 SHEET 4 AA2 6 TYR H 32 GLN H 39 -1 N HIS H 35 O ALA H 93 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 108 VAL H 112 1 O THR H 109 N GLU H 10 SHEET 3 AA3 4 ALA H 88 PRO H 96 -1 N TYR H 90 O THR H 108 SHEET 4 AA3 4 VAL H 103 TRP H 104 -1 O VAL H 103 N ARG H 94 SHEET 1 AA4 4 SER H 121 LEU H 125 0 SHEET 2 AA4 4 THR H 136 TYR H 146 -1 O GLY H 140 N LEU H 125 SHEET 3 AA4 4 TYR H 177 PRO H 186 -1 O VAL H 185 N ALA H 137 SHEET 4 AA4 4 VAL H 164 THR H 166 -1 N HIS H 165 O VAL H 182 SHEET 1 AA5 4 SER H 121 LEU H 125 0 SHEET 2 AA5 4 THR H 136 TYR H 146 -1 O GLY H 140 N LEU H 125 SHEET 3 AA5 4 TYR H 177 PRO H 186 -1 O VAL H 185 N ALA H 137 SHEET 4 AA5 4 VAL H 170 LEU H 171 -1 N VAL H 170 O SER H 178 SHEET 1 AA6 3 THR H 152 TRP H 155 0 SHEET 2 AA6 3 TYR H 195 HIS H 201 -1 O ASN H 198 N SER H 154 SHEET 3 AA6 3 THR H 206 VAL H 212 -1 O THR H 206 N HIS H 201 SHEET 1 AA7 5 SER L 9 GLY L 12 0 SHEET 2 AA7 5 THR L 101 VAL L 105 1 O THR L 104 N VAL L 10 SHEET 3 AA7 5 ALA L 83 TYR L 90 -1 N ALA L 83 O LEU L 103 SHEET 4 AA7 5 SER L 33 GLN L 37 -1 N TYR L 35 O TYR L 86 SHEET 5 AA7 5 LYS L 44 ILE L 47 -1 O MET L 46 N TRP L 34 SHEET 1 AA8 4 SER L 9 GLY L 12 0 SHEET 2 AA8 4 THR L 101 VAL L 105 1 O THR L 104 N VAL L 10 SHEET 3 AA8 4 ALA L 83 TYR L 90 -1 N ALA L 83 O LEU L 103 SHEET 4 AA8 4 LEU L 95A PHE L 97 -1 O VAL L 96 N SER L 89 SHEET 1 AA9 3 ILE L 18 THR L 23 0 SHEET 2 AA9 3 THR L 69 ILE L 74 -1 O LEU L 72 N ILE L 20 SHEET 3 AA9 3 PHE L 61 SER L 66 -1 N SER L 64 O SER L 71 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB1 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB1 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB2 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB2 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB3 4 SER L 153 VAL L 155 0 SHEET 2 AB3 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB3 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AB3 4 SER L 200 VAL L 206 -1 O SER L 200 N HIS L 197 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 2 CYS H 141 CYS H 197 1555 1555 2.05 SSBOND 3 CYS L 22 CYS L 87 1555 1555 2.05 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.07 CISPEP 1 PHE H 147 PRO H 148 0 -3.63 CISPEP 2 GLU H 149 PRO H 150 0 -2.14 CISPEP 3 TYR L 140 PRO L 141 0 2.44 CRYST1 71.304 71.304 404.844 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014024 0.008097 0.000000 0.00000 SCALE2 0.000000 0.016194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002470 0.00000