HEADER IMMUNE SYSTEM 29-SEP-20 7K9Z TITLE CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN IN COMPLEX TITLE 2 WITH THE FAB FRAGMENTS OF NEUTRALIZING ANTIBODIES 298 AND 52 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 52 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 52 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 298 FAB LIGHT CHAIN; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: 298 FAB HEAVY CHAIN; COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: SPIKE PROTEIN S1; COMPND 19 CHAIN: E; COMPND 20 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN,SPIKE GLYCOPROTEIN; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 27 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 31 2; SOURCE 32 ORGANISM_COMMON: 2019-NCOV; SOURCE 33 ORGANISM_TAXID: 2697049; SOURCE 34 GENE: S, 2; SOURCE 35 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 36 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, RECEPTOR BINDING DOMAIN, NEUTRALIZING ANTIBODIES, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NEWTON,I.KUCHARSKA,E.RUJAS,H.CUI,J.P.JULIEN REVDAT 4 18-OCT-23 7K9Z 1 JRNL REMARK REVDAT 3 28-JUL-21 7K9Z 1 JRNL REVDAT 2 27-JAN-21 7K9Z 1 COMPND REVDAT 1 28-OCT-20 7K9Z 0 JRNL AUTH E.RUJAS,I.KUCHARSKA,Y.Z.TAN,S.BENLEKBIR,H.CUI,T.ZHAO, JRNL AUTH 2 G.A.WASNEY,P.BUDYLOWSKI,F.GUVENC,J.C.NEWTON,T.SICARD, JRNL AUTH 3 A.SEMESI,K.MUTHURAMAN,A.NOUANESENGSY,C.B.ASCHNER,K.PRIETO, JRNL AUTH 4 S.A.BUELER,S.YOUSSEF,S.LIAO-CHAN,J.GLANVILLE, JRNL AUTH 5 N.CHRISTIE-HOLMES,S.MUBAREKA,S.D.GRAY-OWEN,J.L.RUBINSTEIN, JRNL AUTH 6 B.TREANOR,J.P.JULIEN JRNL TITL MULTIVALENCY TRANSFORMS SARS-COV-2 ANTIBODIES INTO JRNL TITL 2 ULTRAPOTENT NEUTRALIZERS. JRNL REF NAT COMMUN V. 12 3661 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34135340 JRNL DOI 10.1038/S41467-021-23825-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.RUJAS,I.KUCHARSKA,Y.Z.TAN,S.BENLEKBIR,H.CUI,T.ZHAO, REMARK 1 AUTH 2 G.WASNEY,P.BUDYLOWSKI,F.GUVENC,J.C.NEWTON,T.SICARD,A.SEMESI, REMARK 1 AUTH 3 K.MUTHURAMAN,A.NOUANESENGSY,K.PRIETO,S.A.BUELER,S.YOUSSEF, REMARK 1 AUTH 4 S.LIAO-CHAN,J.GLANVILLE,N.CHRISTIE-HOLMES,S.MUBAREKA, REMARK 1 AUTH 5 S.D.GRAY-OWEN,J.L.RUBINSTEIN,B.TREANOR,J.P.JULIEN REMARK 1 TITL MULTIVALENCY TRANSFORMS SARS-COV-2 ANTIBODIES INTO BROAD AND REMARK 1 TITL 2 ULTRAPOTENT NEUTRALIZERS REMARK 1 REF BIORXIV 2020 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2020.10.15.341636 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 31422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6100 - 6.5400 1.00 2964 151 0.2140 0.2105 REMARK 3 2 6.5400 - 5.2000 1.00 2788 142 0.2337 0.2739 REMARK 3 3 5.2000 - 4.5400 1.00 2752 143 0.2103 0.2399 REMARK 3 4 4.5400 - 4.1300 1.00 2698 187 0.2354 0.3054 REMARK 3 5 4.1300 - 3.8300 1.00 2711 128 0.2773 0.2880 REMARK 3 6 3.8300 - 3.6100 0.99 2687 165 0.3059 0.3632 REMARK 3 7 3.6100 - 3.4300 0.99 2683 131 0.3266 0.3576 REMARK 3 8 3.4300 - 3.2800 0.99 2673 113 0.3388 0.3579 REMARK 3 9 3.2800 - 3.1500 0.99 2638 136 0.3628 0.3521 REMARK 3 10 3.1500 - 3.0400 0.98 2632 133 0.3747 0.3505 REMARK 3 11 3.0400 - 2.9500 0.98 2594 173 0.4149 0.4617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1066 -17.9909 56.7941 REMARK 3 T TENSOR REMARK 3 T11: 0.9105 T22: 1.8400 REMARK 3 T33: 0.6253 T12: -0.2353 REMARK 3 T13: -0.0425 T23: -0.1773 REMARK 3 L TENSOR REMARK 3 L11: 1.1157 L22: 7.1715 REMARK 3 L33: 3.1083 L12: -0.9879 REMARK 3 L13: -0.8754 L23: 3.4698 REMARK 3 S TENSOR REMARK 3 S11: -0.2859 S12: -0.0538 S13: 0.3357 REMARK 3 S21: -0.3521 S22: 0.4456 S23: -0.2342 REMARK 3 S31: -0.6077 S32: 0.1250 S33: -0.1658 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 33 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8922 -16.4135 60.0750 REMARK 3 T TENSOR REMARK 3 T11: 1.1359 T22: 1.6808 REMARK 3 T33: 0.5269 T12: -0.0182 REMARK 3 T13: -0.0375 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 1.4358 L22: 2.9032 REMARK 3 L33: 2.0438 L12: 0.8288 REMARK 3 L13: 1.1897 L23: 1.4121 REMARK 3 S TENSOR REMARK 3 S11: -0.1358 S12: 0.0063 S13: 0.3061 REMARK 3 S21: 0.4520 S22: 0.0595 S23: 0.1330 REMARK 3 S31: -0.6640 S32: -0.4151 S33: 0.0374 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 120 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0835 -14.6614 91.2993 REMARK 3 T TENSOR REMARK 3 T11: 1.3365 T22: 1.7504 REMARK 3 T33: 0.7611 T12: -0.0898 REMARK 3 T13: -0.2579 T23: -0.2343 REMARK 3 L TENSOR REMARK 3 L11: 1.7497 L22: 7.2407 REMARK 3 L33: 5.6143 L12: -0.1282 REMARK 3 L13: 0.1550 L23: -1.1050 REMARK 3 S TENSOR REMARK 3 S11: -0.3716 S12: -0.3702 S13: 0.2861 REMARK 3 S21: 0.3979 S22: 0.1995 S23: -0.3454 REMARK 3 S31: -1.7630 S32: -0.0750 S33: 0.1576 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 189 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7442 -11.5205 92.4936 REMARK 3 T TENSOR REMARK 3 T11: 1.9401 T22: 1.9812 REMARK 3 T33: 1.0132 T12: -0.6224 REMARK 3 T13: -0.2956 T23: 0.1295 REMARK 3 L TENSOR REMARK 3 L11: 0.2610 L22: 1.8315 REMARK 3 L33: 0.7793 L12: -0.6179 REMARK 3 L13: -0.3432 L23: 0.8694 REMARK 3 S TENSOR REMARK 3 S11: -0.3027 S12: -0.2821 S13: 0.1403 REMARK 3 S21: -0.4184 S22: 0.5144 S23: -0.3884 REMARK 3 S31: -0.3777 S32: -0.0380 S33: -0.3139 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 0 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9571 -34.2598 70.5023 REMARK 3 T TENSOR REMARK 3 T11: 0.8983 T22: 1.9648 REMARK 3 T33: 0.4463 T12: 0.0419 REMARK 3 T13: 0.0795 T23: -0.1096 REMARK 3 L TENSOR REMARK 3 L11: 3.2173 L22: 1.8835 REMARK 3 L33: 2.9283 L12: -0.3955 REMARK 3 L13: 2.1778 L23: -1.4698 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: -0.4330 S13: -0.0283 REMARK 3 S21: 0.4141 S22: 0.1206 S23: 0.3972 REMARK 3 S31: 0.2802 S32: -0.8507 S33: -0.0164 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 39 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8671 -35.4774 71.6878 REMARK 3 T TENSOR REMARK 3 T11: 0.7660 T22: 2.4200 REMARK 3 T33: -0.2496 T12: -0.0612 REMARK 3 T13: 0.0816 T23: -0.3210 REMARK 3 L TENSOR REMARK 3 L11: 0.3566 L22: 1.3525 REMARK 3 L33: 1.6887 L12: 0.0667 REMARK 3 L13: -0.0855 L23: 0.5648 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: -0.2442 S13: -0.1564 REMARK 3 S21: 0.3253 S22: -0.3639 S23: 0.0268 REMARK 3 S31: -0.4236 S32: -0.4854 S33: 0.1577 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 116 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9663 -14.0719 97.0331 REMARK 3 T TENSOR REMARK 3 T11: 1.4531 T22: 2.0211 REMARK 3 T33: 0.6914 T12: 0.3460 REMARK 3 T13: -0.2799 T23: -0.1474 REMARK 3 L TENSOR REMARK 3 L11: 2.7177 L22: 3.5886 REMARK 3 L33: 2.1970 L12: -0.0140 REMARK 3 L13: 0.0499 L23: 0.1037 REMARK 3 S TENSOR REMARK 3 S11: -0.2636 S12: -0.3740 S13: 0.3133 REMARK 3 S21: 0.3687 S22: -0.0363 S23: 0.1317 REMARK 3 S31: -1.3174 S32: -1.3186 S33: 0.2947 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9666 -15.4399 98.0823 REMARK 3 T TENSOR REMARK 3 T11: 1.6445 T22: 2.1450 REMARK 3 T33: 0.7879 T12: 0.3884 REMARK 3 T13: -0.0825 T23: -0.3318 REMARK 3 L TENSOR REMARK 3 L11: 5.0518 L22: 0.3326 REMARK 3 L33: 4.2483 L12: 1.1612 REMARK 3 L13: 0.7268 L23: 0.5490 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: -0.1558 S13: 0.7652 REMARK 3 S21: 0.2966 S22: -0.7281 S23: 0.8958 REMARK 3 S31: -1.3681 S32: -1.7731 S33: 0.7414 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3121 -48.9166 18.4523 REMARK 3 T TENSOR REMARK 3 T11: 0.9817 T22: 1.3912 REMARK 3 T33: 0.4330 T12: 0.0343 REMARK 3 T13: -0.0283 T23: -0.1517 REMARK 3 L TENSOR REMARK 3 L11: 4.1242 L22: 3.6168 REMARK 3 L33: 4.3507 L12: 0.8855 REMARK 3 L13: -0.0032 L23: 0.6170 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: -0.4545 S13: 0.0583 REMARK 3 S21: 0.0932 S22: -0.4511 S23: 0.4506 REMARK 3 S31: 0.3554 S32: -0.3544 S33: 0.4409 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9984 -47.6589 0.7251 REMARK 3 T TENSOR REMARK 3 T11: 1.0290 T22: 1.2441 REMARK 3 T33: 0.4294 T12: 0.0681 REMARK 3 T13: 0.0820 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.2030 L22: 0.7355 REMARK 3 L33: 2.0821 L12: -0.4030 REMARK 3 L13: -0.2721 L23: 0.9198 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.1248 S13: -0.0672 REMARK 3 S21: -0.2386 S22: -0.1565 S23: -0.1417 REMARK 3 S31: -0.1179 S32: -0.0259 S33: 0.1903 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1672 -53.1717 -7.9075 REMARK 3 T TENSOR REMARK 3 T11: 1.2127 T22: 1.2619 REMARK 3 T33: 0.5047 T12: 0.3220 REMARK 3 T13: 0.1158 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 6.8121 L22: 2.1252 REMARK 3 L33: 0.4761 L12: 0.0797 REMARK 3 L13: 1.0515 L23: 0.6568 REMARK 3 S TENSOR REMARK 3 S11: 0.3131 S12: 0.2198 S13: -0.1857 REMARK 3 S21: -0.2257 S22: -0.1030 S23: -0.4019 REMARK 3 S31: -0.5708 S32: -0.0991 S33: -0.2471 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4661 -30.4986 23.9246 REMARK 3 T TENSOR REMARK 3 T11: 1.0442 T22: 1.7495 REMARK 3 T33: 0.5088 T12: 0.0259 REMARK 3 T13: 0.0003 T23: -0.1155 REMARK 3 L TENSOR REMARK 3 L11: 1.2197 L22: 2.8244 REMARK 3 L33: 3.2294 L12: 1.0120 REMARK 3 L13: 1.1652 L23: -1.0802 REMARK 3 S TENSOR REMARK 3 S11: 0.1268 S12: -0.1139 S13: 0.3515 REMARK 3 S21: 0.0433 S22: -0.4932 S23: 0.0345 REMARK 3 S31: -0.8833 S32: 0.0508 S33: 0.3600 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3782 -34.6519 25.7139 REMARK 3 T TENSOR REMARK 3 T11: 0.9545 T22: 1.7675 REMARK 3 T33: 0.4795 T12: -0.0440 REMARK 3 T13: -0.1300 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 3.5990 L22: 2.2730 REMARK 3 L33: 5.5100 L12: 1.2838 REMARK 3 L13: -3.3699 L23: 0.3409 REMARK 3 S TENSOR REMARK 3 S11: -0.0540 S12: -0.6420 S13: 0.1484 REMARK 3 S21: -0.1424 S22: -0.2550 S23: 0.1015 REMARK 3 S31: -0.3884 S32: 0.7539 S33: 0.3071 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 120 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5510 -35.6039 -7.6371 REMARK 3 T TENSOR REMARK 3 T11: 1.4503 T22: 1.3680 REMARK 3 T33: 0.5332 T12: 0.1045 REMARK 3 T13: 0.0559 T23: -0.1153 REMARK 3 L TENSOR REMARK 3 L11: 4.2177 L22: 2.0327 REMARK 3 L33: 2.6295 L12: 0.0689 REMARK 3 L13: 1.7820 L23: -0.2765 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.1901 S13: 0.2276 REMARK 3 S21: -0.7643 S22: 0.1383 S23: -0.2925 REMARK 3 S31: -1.1917 S32: 0.1195 S33: -0.1585 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 333 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.7227 -14.8746 51.7127 REMARK 3 T TENSOR REMARK 3 T11: 1.1883 T22: 1.7064 REMARK 3 T33: 0.6145 T12: 0.0995 REMARK 3 T13: 0.0500 T23: -0.1601 REMARK 3 L TENSOR REMARK 3 L11: 7.2340 L22: 4.5937 REMARK 3 L33: 1.6651 L12: -1.4571 REMARK 3 L13: -1.1353 L23: -0.5480 REMARK 3 S TENSOR REMARK 3 S11: -0.2612 S12: -1.4487 S13: 0.7902 REMARK 3 S21: 0.3469 S22: 0.4195 S23: 0.2533 REMARK 3 S31: -1.0747 S32: 0.5754 S33: -0.2174 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 353 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.2223 -19.7364 56.8371 REMARK 3 T TENSOR REMARK 3 T11: 0.8497 T22: 1.7417 REMARK 3 T33: 0.6213 T12: 0.1197 REMARK 3 T13: 0.0551 T23: -0.0977 REMARK 3 L TENSOR REMARK 3 L11: 4.1551 L22: 2.0802 REMARK 3 L33: 7.3294 L12: -1.2292 REMARK 3 L13: -2.0711 L23: 0.0205 REMARK 3 S TENSOR REMARK 3 S11: -0.7146 S12: -1.2903 S13: 0.1299 REMARK 3 S21: 0.7914 S22: -0.0841 S23: 0.1466 REMARK 3 S31: -0.5505 S32: 0.5556 S33: 0.5605 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 365 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.9530 -14.3968 43.1879 REMARK 3 T TENSOR REMARK 3 T11: 0.9028 T22: 1.2482 REMARK 3 T33: 0.7418 T12: 0.2464 REMARK 3 T13: 0.0397 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 3.4953 L22: 0.3592 REMARK 3 L33: 7.6835 L12: -0.4362 REMARK 3 L13: -2.8055 L23: 0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.3245 S12: -0.5316 S13: 0.3526 REMARK 3 S21: 0.3385 S22: -0.0219 S23: 0.4892 REMARK 3 S31: -0.8427 S32: -0.7554 S33: 0.3875 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 376 THROUGH 393 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.4894 -23.5450 48.6948 REMARK 3 T TENSOR REMARK 3 T11: 0.7248 T22: 2.1815 REMARK 3 T33: 0.5423 T12: 0.1640 REMARK 3 T13: 0.0620 T23: -0.1275 REMARK 3 L TENSOR REMARK 3 L11: 1.4641 L22: 2.4202 REMARK 3 L33: 9.5985 L12: 0.3304 REMARK 3 L13: 1.0023 L23: -1.6900 REMARK 3 S TENSOR REMARK 3 S11: -0.1671 S12: -0.6235 S13: 0.3313 REMARK 3 S21: 0.2335 S22: 0.3575 S23: 0.4431 REMARK 3 S31: 0.0068 S32: -1.2650 S33: -0.1290 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 394 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9369 -26.3459 42.5731 REMARK 3 T TENSOR REMARK 3 T11: 0.8630 T22: 1.5993 REMARK 3 T33: 0.3892 T12: 0.0710 REMARK 3 T13: 0.0039 T23: -0.1119 REMARK 3 L TENSOR REMARK 3 L11: 2.5338 L22: 5.5564 REMARK 3 L33: 0.3649 L12: 1.0459 REMARK 3 L13: 0.4515 L23: -0.9330 REMARK 3 S TENSOR REMARK 3 S11: 0.2410 S12: -0.0078 S13: 0.0718 REMARK 3 S21: -0.3642 S22: -0.0859 S23: 0.0727 REMARK 3 S31: -0.4225 S32: -0.1659 S33: -0.2387 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 443 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9806 -24.1195 40.0531 REMARK 3 T TENSOR REMARK 3 T11: 0.9091 T22: 2.4517 REMARK 3 T33: 0.2124 T12: -0.0298 REMARK 3 T13: -0.1395 T23: -0.1166 REMARK 3 L TENSOR REMARK 3 L11: 1.1030 L22: 0.2661 REMARK 3 L33: 3.2773 L12: -0.4271 REMARK 3 L13: -0.1058 L23: 0.5918 REMARK 3 S TENSOR REMARK 3 S11: 0.1558 S12: 0.2779 S13: 0.4795 REMARK 3 S21: -0.4122 S22: 0.2532 S23: -0.2133 REMARK 3 S31: -1.1924 S32: 0.4974 S33: -0.0814 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 460 THROUGH 479 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9514 -37.2137 46.9098 REMARK 3 T TENSOR REMARK 3 T11: 0.7613 T22: 2.1457 REMARK 3 T33: -0.0529 T12: 0.1822 REMARK 3 T13: 0.0425 T23: -0.1226 REMARK 3 L TENSOR REMARK 3 L11: 1.6028 L22: 0.3548 REMARK 3 L33: 1.2285 L12: -0.5842 REMARK 3 L13: -0.6485 L23: 0.5701 REMARK 3 S TENSOR REMARK 3 S11: -0.2136 S12: -0.0729 S13: -0.1326 REMARK 3 S21: 0.1840 S22: 0.0930 S23: 0.4458 REMARK 3 S31: 0.4704 S32: 0.5194 S33: 0.0654 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 480 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9778 -34.8055 40.9053 REMARK 3 T TENSOR REMARK 3 T11: 0.8479 T22: 2.0979 REMARK 3 T33: 0.3544 T12: 0.0721 REMARK 3 T13: 0.0383 T23: -0.1636 REMARK 3 L TENSOR REMARK 3 L11: 1.3493 L22: 1.6498 REMARK 3 L33: 3.8918 L12: 0.1084 REMARK 3 L13: -1.0988 L23: 2.1416 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.1213 S13: -0.1879 REMARK 3 S21: -0.4385 S22: -0.1852 S23: -0.0548 REMARK 3 S31: 0.1344 S32: 0.6940 S33: 0.1057 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 495 THROUGH 516 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.5722 -19.6612 38.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.9773 T22: 2.0052 REMARK 3 T33: 0.4114 T12: -0.0547 REMARK 3 T13: -0.0273 T23: -0.0773 REMARK 3 L TENSOR REMARK 3 L11: 3.6626 L22: 1.8397 REMARK 3 L33: 1.0761 L12: 0.2074 REMARK 3 L13: -1.4898 L23: 0.8196 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -0.0318 S13: 0.6072 REMARK 3 S21: -0.5379 S22: -0.0510 S23: -0.6402 REMARK 3 S31: -0.1680 S32: 0.5246 S33: -0.0796 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 517 THROUGH 527 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.0730 -24.3932 62.1991 REMARK 3 T TENSOR REMARK 3 T11: 1.0446 T22: 2.1192 REMARK 3 T33: 0.6172 T12: 0.0829 REMARK 3 T13: 0.2137 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.3285 L22: 2.0362 REMARK 3 L33: 4.6082 L12: 0.6457 REMARK 3 L13: 0.0935 L23: -1.6772 REMARK 3 S TENSOR REMARK 3 S11: -0.1747 S12: -0.9059 S13: -0.3112 REMARK 3 S21: 0.6816 S22: 0.5602 S23: 0.3702 REMARK 3 S31: -1.3952 S32: -0.8631 S33: -0.3344 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7K9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1000252007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XPREP 2015/1, XDS 0.94 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31545 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 39.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.70 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 0.74200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DN3, 5CZX, 6XDG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) 2-PROPANOL, 20% (W/V) PEG REMARK 280 4000, 0.1 M SODIUM CITRATE PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 216.73067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.36533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.36533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 216.73067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 GLN B 1 REMARK 465 SER B 132 REMARK 465 GLY B 133 REMARK 465 GLY B 134 REMARK 465 ARG E 319 REMARK 465 VAL E 320 REMARK 465 GLN E 321 REMARK 465 PRO E 322 REMARK 465 THR E 323 REMARK 465 GLU E 324 REMARK 465 SER E 325 REMARK 465 ILE E 326 REMARK 465 VAL E 327 REMARK 465 ARG E 328 REMARK 465 PHE E 329 REMARK 465 PRO E 330 REMARK 465 ASN E 331 REMARK 465 ILE E 332 REMARK 465 LYS E 528 REMARK 465 LYS E 529 REMARK 465 SER E 530 REMARK 465 THR E 531 REMARK 465 ASN E 532 REMARK 465 LEU E 533 REMARK 465 VAL E 534 REMARK 465 LYS E 535 REMARK 465 ASN E 536 REMARK 465 LYS E 537 REMARK 465 CYS E 538 REMARK 465 VAL E 539 REMARK 465 ASN E 540 REMARK 465 PHE E 541 REMARK 465 HIS E 542 REMARK 465 HIS E 543 REMARK 465 HIS E 544 REMARK 465 HIS E 545 REMARK 465 HIS E 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER L 121 OE1 GLN L 124 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG E 357 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR H 30 -18.06 70.54 REMARK 500 ALA H 88 -178.52 -176.06 REMARK 500 ARG H 96 -177.96 -68.06 REMARK 500 TRP H 154 -132.17 58.30 REMARK 500 SER L 30 -129.62 59.62 REMARK 500 ASN L 31 68.96 -105.29 REMARK 500 ALA L 50 16.95 57.91 REMARK 500 ALA L 51 -1.12 66.95 REMARK 500 GLU L 143 109.67 -56.87 REMARK 500 ASP L 151 -131.55 62.48 REMARK 500 LYS L 169 -61.22 -96.94 REMARK 500 SER A 52 -39.66 -155.56 REMARK 500 ASP A 82 57.15 -96.22 REMARK 500 ASN A 138 70.34 56.14 REMARK 500 GLU A 143 104.73 -57.66 REMARK 500 SER B 74 -169.78 -164.00 REMARK 500 SER B 127 -115.07 -162.12 REMARK 500 SER B 128 95.25 -56.15 REMARK 500 SER B 130 174.11 73.40 REMARK 500 ALA E 372 14.22 59.55 REMARK 500 ASP E 428 53.24 -92.98 REMARK 500 SER E 438 46.86 -143.91 REMARK 500 TYR E 449 31.90 -98.66 REMARK 500 THR E 500 51.20 -91.98 REMARK 500 LEU E 518 -167.21 -106.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 7K9Z H 1 216 PDB 7K9Z 7K9Z 1 216 DBREF 7K9Z L 0 214 PDB 7K9Z 7K9Z 0 214 DBREF 7K9Z A 1 214 PDB 7K9Z 7K9Z 1 214 DBREF 7K9Z B 1 216 PDB 7K9Z 7K9Z 1 216 DBREF 7K9Z E 319 541 UNP P0DTC2 SPIKE_SARS2 319 541 SEQADV 7K9Z HIS E 542 UNP P0DTC2 EXPRESSION TAG SEQADV 7K9Z HIS E 543 UNP P0DTC2 EXPRESSION TAG SEQADV 7K9Z HIS E 544 UNP P0DTC2 EXPRESSION TAG SEQADV 7K9Z HIS E 545 UNP P0DTC2 EXPRESSION TAG SEQADV 7K9Z HIS E 546 UNP P0DTC2 EXPRESSION TAG SEQRES 1 H 220 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 220 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 220 TYR THR PHE THR SER TYR GLY ILE SER TRP VAL ARG GLN SEQRES 4 H 220 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 H 220 PRO MET PHE GLY THR THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 220 GLY ARG VAL THR ILE THR ALA ASP LYS SER THR SER THR SEQRES 7 H 220 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 220 ALA VAL TYR TYR CYS ALA ARG ASP ARG GLY ASP THR ILE SEQRES 9 H 220 ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 H 220 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 220 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 H 220 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 220 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 220 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 220 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 220 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 220 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 215 SER ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER SEQRES 2 L 215 ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SEQRES 3 L 215 SER GLN GLY ILE SER ASN ASN LEU ASN TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SEQRES 5 L 215 SER SER LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER SEQRES 7 L 215 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SEQRES 8 L 215 GLY ASN GLY PHE PRO LEU THR PHE GLY PRO GLY THR LYS SEQRES 9 L 215 VAL ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 220 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 A 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 A 220 GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR LEU SEQRES 4 A 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 A 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 220 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 A 220 TYR TYR CYS GLN GLN TYR TYR SER THR PRO PRO THR PHE SEQRES 9 A 220 GLY GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA SEQRES 10 A 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 A 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 A 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 A 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 A 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 A 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 A 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 A 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 222 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 B 222 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 B 222 GLY THR PHE SER THR TYR GLY ILE SER TRP VAL ARG GLN SEQRES 4 B 222 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 B 222 PRO ASN SER GLY GLY THR ASP LEU ALA GLN LYS PHE GLN SEQRES 6 B 222 GLY ARG VAL THR MET THR ARG ASP THR SER THR SER THR SEQRES 7 B 222 VAL TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 B 222 ALA VAL TYR TYR CYS ALA SER ASP PRO ARG ASP ASP ILE SEQRES 9 B 222 ALA GLY GLY TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 B 222 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 B 222 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 B 222 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 B 222 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 B 222 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 B 222 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 B 222 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 B 222 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 B 222 CYS SEQRES 1 E 228 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 E 228 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 E 228 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 E 228 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 E 228 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 E 228 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 E 228 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 E 228 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 E 228 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 E 228 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 E 228 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 E 228 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 E 228 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 E 228 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 E 228 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 E 228 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 E 228 PRO LYS LYS SER THR ASN LEU VAL LYS ASN LYS CYS VAL SEQRES 18 E 228 ASN PHE HIS HIS HIS HIS HIS HET NAG E 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 6 NAG C8 H15 N O6 HELIX 1 AA1 ARG H 83 THR H 87 5 5 HELIX 2 AA2 SER H 187 LEU H 189 5 3 HELIX 3 AA3 GLN L 79 PHE L 83 5 5 HELIX 4 AA4 SER L 121 GLY L 128 1 8 HELIX 5 AA5 SER L 182 GLU L 187 1 6 HELIX 6 AA6 SER A 121 SER A 127 1 7 HELIX 7 AA7 LYS A 183 HIS A 189 1 7 HELIX 8 AA8 ARG B 83 THR B 87 5 5 HELIX 9 AA9 PRO B 185 LEU B 189 5 5 HELIX 10 AB1 PRO E 337 VAL E 341 5 5 HELIX 11 AB2 ASP E 364 ASN E 370 1 7 HELIX 12 AB3 SER E 383 ASN E 388 1 6 HELIX 13 AB4 ASP E 405 ILE E 410 5 6 HELIX 14 AB5 GLY E 416 ASN E 422 1 7 HELIX 15 AB6 SER E 438 SER E 443 1 6 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 ASP H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 GLY H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N GLY H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 4 ALA H 88 ASP H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 PRO H 123 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O SER H 180 N CYS H 140 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 PRO H 123 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O SER H 180 N CYS H 140 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 VAL H 152 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA8 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA9 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 PHE L 116 PHE L 118 0 SHEET 2 AB1 4 VAL L 132 LEU L 135 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 LEU L 175 LEU L 179 -1 O SER L 177 N CYS L 134 SHEET 4 AB1 4 GLN L 160 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 AB3 4 MET A 4 SER A 7 0 SHEET 2 AB3 4 ALA A 19 SER A 25 -1 O LYS A 24 N THR A 5 SHEET 3 AB3 4 ASP A 70 ILE A 75 -1 O LEU A 73 N ILE A 21 SHEET 4 AB3 4 PHE A 62 SER A 67 -1 N SER A 67 O ASP A 70 SHEET 1 AB4 6 SER A 10 SER A 14 0 SHEET 2 AB4 6 THR A 102 LYS A 107 1 O GLU A 105 N LEU A 11 SHEET 3 AB4 6 VAL A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 AB4 6 LEU A 33 GLN A 38 -1 N ALA A 34 O GLN A 89 SHEET 5 AB4 6 LYS A 45 TYR A 49 -1 O LYS A 45 N GLN A 37 SHEET 6 AB4 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 AB5 4 SER A 10 SER A 14 0 SHEET 2 AB5 4 THR A 102 LYS A 107 1 O GLU A 105 N LEU A 11 SHEET 3 AB5 4 VAL A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 AB5 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AB6 4 PHE A 116 PHE A 118 0 SHEET 2 AB6 4 THR A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 AB6 4 TYR A 173 SER A 182 -1 O LEU A 175 N LEU A 136 SHEET 4 AB6 4 SER A 159 GLN A 160 -1 N GLN A 160 O THR A 178 SHEET 1 AB7 4 ALA A 153 LEU A 154 0 SHEET 2 AB7 4 ALA A 144 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 AB7 4 VAL A 191 HIS A 198 -1 O ALA A 193 N LYS A 149 SHEET 4 AB7 4 VAL A 205 ASN A 210 -1 O PHE A 209 N TYR A 192 SHEET 1 AB8 4 LEU B 4 GLN B 6 0 SHEET 2 AB8 4 VAL B 18 ALA B 24 -1 O LYS B 23 N VAL B 5 SHEET 3 AB8 4 THR B 77 LEU B 82 -1 O VAL B 78 N CYS B 22 SHEET 4 AB8 4 VAL B 67 ARG B 71 -1 N THR B 68 O GLU B 81 SHEET 1 AB9 6 GLU B 10 LYS B 12 0 SHEET 2 AB9 6 THR B 107 VAL B 111 1 O THR B 110 N LYS B 12 SHEET 3 AB9 6 ALA B 88 ALA B 93 -1 N ALA B 88 O VAL B 109 SHEET 4 AB9 6 ILE B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 AB9 6 LEU B 45 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AB9 6 THR B 57 LEU B 59 -1 O ASP B 58 N TRP B 50 SHEET 1 AC1 4 SER B 120 LEU B 124 0 SHEET 2 AC1 4 ALA B 136 TYR B 145 -1 O LEU B 141 N PHE B 122 SHEET 3 AC1 4 TYR B 176 VAL B 184 -1 O TYR B 176 N TYR B 145 SHEET 4 AC1 4 VAL B 163 THR B 165 -1 N HIS B 164 O VAL B 181 SHEET 1 AC2 4 SER B 120 LEU B 124 0 SHEET 2 AC2 4 ALA B 136 TYR B 145 -1 O LEU B 141 N PHE B 122 SHEET 3 AC2 4 TYR B 176 VAL B 184 -1 O TYR B 176 N TYR B 145 SHEET 4 AC2 4 VAL B 169 LEU B 170 -1 N VAL B 169 O SER B 177 SHEET 1 AC3 3 THR B 151 TRP B 154 0 SHEET 2 AC3 3 TYR B 194 HIS B 200 -1 O ASN B 197 N SER B 153 SHEET 3 AC3 3 THR B 205 VAL B 211 -1 O THR B 205 N HIS B 200 SHEET 1 AC4 5 ASN E 354 ILE E 358 0 SHEET 2 AC4 5 ASN E 394 ARG E 403 -1 O VAL E 395 N ILE E 358 SHEET 3 AC4 5 PRO E 507 GLU E 516 -1 O VAL E 512 N ASP E 398 SHEET 4 AC4 5 CYS E 432 ASN E 437 -1 N ILE E 434 O VAL E 511 SHEET 5 AC4 5 THR E 376 CYS E 379 -1 N LYS E 378 O VAL E 433 SHEET 1 AC5 2 CYS E 361 VAL E 362 0 SHEET 2 AC5 2 VAL E 524 CYS E 525 1 O CYS E 525 N CYS E 361 SHEET 1 AC6 2 LEU E 452 ARG E 454 0 SHEET 2 AC6 2 LEU E 492 SER E 494 -1 O GLN E 493 N TYR E 453 SHEET 1 AC7 2 TYR E 473 GLN E 474 0 SHEET 2 AC7 2 CYS E 488 TYR E 489 -1 O TYR E 489 N TYR E 473 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 5 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 6 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 7 CYS A 214 CYS B 216 1555 1555 2.03 SSBOND 8 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 9 CYS B 140 CYS B 196 1555 1555 2.03 SSBOND 10 CYS E 336 CYS E 361 1555 1555 2.03 SSBOND 11 CYS E 379 CYS E 432 1555 1555 2.03 SSBOND 12 CYS E 391 CYS E 525 1555 1555 2.03 SSBOND 13 CYS E 480 CYS E 488 1555 1555 2.03 LINK ND2 ASN E 343 C1 NAG E 601 1555 1555 1.45 CISPEP 1 SER L 7 PRO L 8 0 -1.06 CISPEP 2 PHE L 94 PRO L 95 0 -2.20 CISPEP 3 SER A 7 PRO A 8 0 -2.19 CISPEP 4 THR A 94 PRO A 95 0 -0.14 CISPEP 5 PHE B 146 PRO B 147 0 0.14 CISPEP 6 GLU B 148 PRO B 149 0 4.97 CRYST1 87.617 87.617 325.096 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011413 0.006589 0.000000 0.00000 SCALE2 0.000000 0.013179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003076 0.00000