HEADER SIGNALING PROTEIN 01-OCT-20 7KB9 TITLE THE STRUCTURE OF A SENSOR DOMAIN OF A HISTIDINE KINASE (VXRA) FROM TITLE 2 VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961, D238-T240 DELETION TITLE 3 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR HISTIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39315 SOURCE 3 / EL TOR INABA N16961); SOURCE 4 ORGANISM_TAXID: 243277; SOURCE 5 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 6 GENE: VC_A0565; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: -MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG57 KEYWDS VXRA, TWO-COMPONENT SYSTEM, HISTIDINE KINASE, SENSOR DOMAIN, KEYWDS 2 STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,R.WU,R.JEDRZEJCZAK,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 OF INFECTIOUS DISEASES (CSGID) REVDAT 3 18-OCT-23 7KB9 1 REMARK REVDAT 2 16-NOV-22 7KB9 1 JRNL REVDAT 1 14-OCT-20 7KB9 0 JRNL AUTH K.TAN,J.K.TESCHLER,R.WU,R.P.JEDRZEJCZAK,M.ZHOU, JRNL AUTH 2 L.A.SHUVALOVA,M.J.ENDRES,L.F.WELK,K.KWON,W.F.ANDERSON, JRNL AUTH 3 K.J.F.SATCHELL,F.H.YILDIZ,A.JOACHIMIAK JRNL TITL SENSOR DOMAIN OF HISTIDINE KINASE VXRA OF VIBRIO CHOLERAE - JRNL TITL 2 A HAIRPIN-SWAPPED DIMER AND ITS CONFORMATIONAL CHANGE. JRNL REF J.BACTERIOL. 2021 JRNL REFN ESSN 1098-5530 JRNL PMID 33753465 JRNL DOI 10.1128/JB.00643-20 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 36789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0700 - 4.6100 0.94 2721 144 0.1493 0.1930 REMARK 3 2 4.6100 - 3.6600 0.92 2682 135 0.1593 0.1956 REMARK 3 3 3.6600 - 3.2000 0.96 2786 147 0.2004 0.2503 REMARK 3 4 3.2000 - 2.9000 0.96 2785 147 0.2299 0.3036 REMARK 3 5 2.9000 - 2.7000 0.97 2792 136 0.2344 0.2642 REMARK 3 6 2.7000 - 2.5400 0.97 2847 126 0.2258 0.2712 REMARK 3 7 2.5400 - 2.4100 0.98 2871 137 0.2219 0.3113 REMARK 3 8 2.4100 - 2.3000 0.96 2762 141 0.2268 0.2789 REMARK 3 9 2.3000 - 2.2200 0.97 2833 131 0.2386 0.3153 REMARK 3 10 2.2200 - 2.1400 0.97 2801 136 0.2538 0.3048 REMARK 3 11 2.1400 - 2.0700 0.96 2800 144 0.2657 0.3054 REMARK 3 12 2.0700 - 2.0100 0.94 2744 144 0.2832 0.3348 REMARK 3 13 2.0100 - 1.9800 0.57 1603 94 0.3007 0.3409 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3519 REMARK 3 ANGLE : 1.049 4779 REMARK 3 CHIRALITY : 0.056 519 REMARK 3 PLANARITY : 0.007 612 REMARK 3 DIHEDRAL : 20.612 1278 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0177 21.6688 -17.3804 REMARK 3 T TENSOR REMARK 3 T11: 0.4966 T22: 0.3113 REMARK 3 T33: 0.3942 T12: 0.0105 REMARK 3 T13: 0.0360 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 2.1879 L22: 8.7230 REMARK 3 L33: 9.2969 L12: -0.5020 REMARK 3 L13: -0.8590 L23: -1.8748 REMARK 3 S TENSOR REMARK 3 S11: 0.2380 S12: 0.3434 S13: 0.2002 REMARK 3 S21: -0.7245 S22: -0.0256 S23: 0.2041 REMARK 3 S31: -0.1113 S32: 0.3821 S33: -0.1784 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0992 14.9748 4.0890 REMARK 3 T TENSOR REMARK 3 T11: 0.5033 T22: 0.4188 REMARK 3 T33: 0.4421 T12: -0.0701 REMARK 3 T13: 0.1198 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 5.8887 L22: 3.4437 REMARK 3 L33: 4.5381 L12: -3.7304 REMARK 3 L13: 2.6153 L23: -3.5274 REMARK 3 S TENSOR REMARK 3 S11: 0.1909 S12: -0.4408 S13: 0.5447 REMARK 3 S21: 0.6728 S22: -0.1383 S23: -0.2352 REMARK 3 S31: -0.5492 S32: -0.0462 S33: 0.0065 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4803 -9.1387 -1.9857 REMARK 3 T TENSOR REMARK 3 T11: 0.5517 T22: 0.4441 REMARK 3 T33: 0.4770 T12: 0.0829 REMARK 3 T13: 0.1331 T23: 0.1338 REMARK 3 L TENSOR REMARK 3 L11: 4.9483 L22: 3.4537 REMARK 3 L33: 2.3589 L12: -4.0950 REMARK 3 L13: -0.7483 L23: 1.4217 REMARK 3 S TENSOR REMARK 3 S11: 0.5695 S12: 0.8628 S13: 0.2798 REMARK 3 S21: -1.4006 S22: -0.5621 S23: -0.4636 REMARK 3 S31: -0.4275 S32: -0.0649 S33: -0.1845 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6796 -27.8047 0.3139 REMARK 3 T TENSOR REMARK 3 T11: 0.3905 T22: 0.5298 REMARK 3 T33: 0.3602 T12: -0.0219 REMARK 3 T13: -0.0219 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.0551 L22: 9.9440 REMARK 3 L33: 8.2143 L12: -2.2714 REMARK 3 L13: 1.1236 L23: 0.2701 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: 0.5948 S13: -0.4312 REMARK 3 S21: -0.6786 S22: 0.0191 S23: -0.0958 REMARK 3 S31: 0.8182 S32: 0.2258 S33: -0.3445 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3175 -15.1861 10.9200 REMARK 3 T TENSOR REMARK 3 T11: 0.2439 T22: 0.3194 REMARK 3 T33: 0.3380 T12: -0.0444 REMARK 3 T13: -0.0196 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 4.6958 L22: 6.6951 REMARK 3 L33: 4.7214 L12: -3.4953 REMARK 3 L13: -1.4798 L23: 0.0651 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.0557 S13: 0.3226 REMARK 3 S21: 0.2759 S22: 0.0107 S23: -0.6076 REMARK 3 S31: -0.1682 S32: 0.2236 S33: -0.0058 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1360 -0.0967 3.4011 REMARK 3 T TENSOR REMARK 3 T11: 0.4037 T22: 0.3154 REMARK 3 T33: 0.4932 T12: 0.0210 REMARK 3 T13: 0.0333 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 2.5094 L22: 4.4385 REMARK 3 L33: 9.3693 L12: 0.4049 REMARK 3 L13: -0.2128 L23: -6.4538 REMARK 3 S TENSOR REMARK 3 S11: 0.1720 S12: 0.0881 S13: -0.0064 REMARK 3 S21: -0.3392 S22: 0.3146 S23: 0.6522 REMARK 3 S31: -0.0161 S32: -0.2988 S33: -0.2473 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9882 13.4426 -2.7171 REMARK 3 T TENSOR REMARK 3 T11: 0.3977 T22: 0.2818 REMARK 3 T33: 0.3455 T12: 0.0257 REMARK 3 T13: 0.0933 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.9906 L22: 5.8931 REMARK 3 L33: 7.8643 L12: -0.4839 REMARK 3 L13: 3.1123 L23: 0.5084 REMARK 3 S TENSOR REMARK 3 S11: 0.3675 S12: -0.0914 S13: -0.5791 REMARK 3 S21: -0.0541 S22: -0.1063 S23: -0.0332 REMARK 3 S31: 0.3078 S32: -0.2020 S33: -0.2414 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7044 19.0630 -8.2036 REMARK 3 T TENSOR REMARK 3 T11: 0.4875 T22: 0.4884 REMARK 3 T33: 0.5511 T12: 0.0077 REMARK 3 T13: 0.0174 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.0585 L22: 3.9061 REMARK 3 L33: 4.0355 L12: -2.7002 REMARK 3 L13: 2.7202 L23: -3.9631 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: -0.4441 S13: -0.0804 REMARK 3 S21: -0.0845 S22: 0.4016 S23: 1.2995 REMARK 3 S31: 0.0303 S32: -1.3143 S33: -0.4151 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3736 6.6216 -14.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.7660 T22: 0.3698 REMARK 3 T33: 0.6522 T12: -0.0276 REMARK 3 T13: 0.0916 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 4.2709 L22: 7.3221 REMARK 3 L33: 3.9006 L12: -0.4723 REMARK 3 L13: 1.5007 L23: -3.1355 REMARK 3 S TENSOR REMARK 3 S11: -0.3913 S12: 0.7508 S13: -0.7731 REMARK 3 S21: -1.3762 S22: -0.2683 S23: 0.4372 REMARK 3 S31: 1.3215 S32: 0.0273 S33: 0.3453 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1614 -10.7014 -18.4002 REMARK 3 T TENSOR REMARK 3 T11: 0.5255 T22: 0.5043 REMARK 3 T33: 0.5229 T12: 0.0198 REMARK 3 T13: 0.1351 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.2554 L22: 8.3459 REMARK 3 L33: 9.4640 L12: 3.2659 REMARK 3 L13: -3.6913 L23: -2.6166 REMARK 3 S TENSOR REMARK 3 S11: 0.1410 S12: -0.7577 S13: 1.0465 REMARK 3 S21: 1.2098 S22: 0.3194 S23: 0.6398 REMARK 3 S31: -0.3704 S32: -0.7597 S33: -0.4860 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5297 -17.5200 -28.7907 REMARK 3 T TENSOR REMARK 3 T11: 0.6189 T22: 0.3011 REMARK 3 T33: 0.4250 T12: 0.0916 REMARK 3 T13: 0.0835 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 3.7879 L22: 6.9278 REMARK 3 L33: 4.0667 L12: 3.6882 REMARK 3 L13: -1.6388 L23: -4.9106 REMARK 3 S TENSOR REMARK 3 S11: -0.2591 S12: 0.1778 S13: -0.2621 REMARK 3 S21: -0.5430 S22: 0.0070 S23: -0.3936 REMARK 3 S31: 0.6944 S32: 0.1353 S33: 0.1801 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6698 14.0058 -42.9552 REMARK 3 T TENSOR REMARK 3 T11: 0.2975 T22: 0.3445 REMARK 3 T33: 0.3446 T12: 0.0745 REMARK 3 T13: 0.1178 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.2333 L22: 4.3485 REMARK 3 L33: 2.5667 L12: 1.0797 REMARK 3 L13: 0.0927 L23: -0.3728 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: -0.0745 S13: 0.1684 REMARK 3 S21: 0.2716 S22: -0.0037 S23: 0.0925 REMARK 3 S31: -0.0493 S32: 0.0055 S33: -0.0879 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 177 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5464 -9.4345 -30.1572 REMARK 3 T TENSOR REMARK 3 T11: 0.4882 T22: 0.2951 REMARK 3 T33: 0.4560 T12: 0.0226 REMARK 3 T13: 0.0906 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.4314 L22: 1.2925 REMARK 3 L33: 3.7516 L12: 1.1285 REMARK 3 L13: -1.0285 L23: -2.1278 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.0254 S13: 0.1626 REMARK 3 S21: -0.0174 S22: 0.1139 S23: 0.3140 REMARK 3 S31: 0.1963 S32: -0.0897 S33: -0.1016 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7844 12.6166 -16.9271 REMARK 3 T TENSOR REMARK 3 T11: 0.6719 T22: 0.4608 REMARK 3 T33: 0.4772 T12: 0.0774 REMARK 3 T13: 0.0939 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 4.4773 L22: 4.0083 REMARK 3 L33: 4.9125 L12: -4.2335 REMARK 3 L13: 4.7038 L23: -4.4210 REMARK 3 S TENSOR REMARK 3 S11: 0.2820 S12: 0.9599 S13: -0.1471 REMARK 3 S21: -0.6796 S22: -0.2171 S23: 0.2914 REMARK 3 S31: 0.2392 S32: 0.3040 S33: -0.2149 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KB9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4R7Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM THIOCYANATE, 20% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 35 REMARK 465 HIS A 252 REMARK 465 SER A 253 REMARK 465 SER B 35 REMARK 465 ASN B 36 REMARK 465 HIS B 252 REMARK 465 SER B 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 82 49.06 -91.13 REMARK 500 LEU A 137 -38.26 76.66 REMARK 500 CYS A 238 86.36 -160.42 REMARK 500 GLN B 82 52.80 -93.06 REMARK 500 LEU B 137 -42.21 74.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R7Q RELATED DB: PDB REMARK 900 1ST WILD TYPE FORM REMARK 900 RELATED ID: 7KB3 RELATED DB: PDB REMARK 900 2ND WILD TYPE FORM REMARK 900 RELATED ID: 7KB4 RELATED DB: PDB REMARK 900 N239 DELETION MUTANT REMARK 900 RELATED ID: 7KB7 RELATED DB: PDB REMARK 900 N239-T240 DELETION MUTANT REMARK 900 RELATED ID: IDP04043 RELATED DB: TARGETTRACK DBREF 7KB9 A 38 253 UNP Q9KM24 Q9KM24_VIBCH 38 256 DBREF 7KB9 B 38 253 UNP Q9KM24 Q9KM24_VIBCH 38 256 SEQADV 7KB9 SER A 35 UNP Q9KM24 EXPRESSION TAG SEQADV 7KB9 ASN A 36 UNP Q9KM24 EXPRESSION TAG SEQADV 7KB9 ALA A 37 UNP Q9KM24 EXPRESSION TAG SEQADV 7KB9 A UNP Q9KM24 ASP 238 DELETION SEQADV 7KB9 A UNP Q9KM24 ASN 239 DELETION SEQADV 7KB9 A UNP Q9KM24 THR 240 DELETION SEQADV 7KB9 SER B 35 UNP Q9KM24 EXPRESSION TAG SEQADV 7KB9 ASN B 36 UNP Q9KM24 EXPRESSION TAG SEQADV 7KB9 ALA B 37 UNP Q9KM24 EXPRESSION TAG SEQADV 7KB9 B UNP Q9KM24 ASP 238 DELETION SEQADV 7KB9 B UNP Q9KM24 ASN 239 DELETION SEQADV 7KB9 B UNP Q9KM24 THR 240 DELETION SEQRES 1 A 219 SER ASN ALA ASP SER LEU PRO GLU ARG ILE ASP LEU PHE SEQRES 2 A 219 VAL SER LEU PHE ASP TYR ASN SER ALA THR THR SER TYR SEQRES 3 A 219 ASP ILE ARG SER ILE GLN THR ASP PHE PRO THR ARG LEU SEQRES 4 A 219 LEU THR PRO ASP SER MET LEU PRO GLN THR SER GLU TYR SEQRES 5 A 219 PRO LEU LYS ASP ILE GLN LEU LEU TYR LYS LEU ALA GLN SEQRES 6 A 219 SER CYS THR GLY LYS LEU PRO LEU SER PRO LEU ILE THR SEQRES 7 A 219 GLU PRO LEU VAL PHE THR ARG SER LEU CYS LYS GLY SER SEQRES 8 A 219 SER LEU SER PRO ARG TRP PHE ALA ARG SER GLY LEU ILE SEQRES 9 A 219 HIS PRO GLY GLY GLY THR TYR ALA PHE ARG TYR ALA GLU SEQRES 10 A 219 LYS TYR PRO ALA GLN PHE ALA ASN LEU LEU PRO TYR MET SEQRES 11 A 219 HIS ILE GLN GLU ARG PRO ASN ALA ALA GLU GLY THR LEU SEQRES 12 A 219 LEU TYR HIS LEU GLN ASN MET GLY GLU ASP ALA ILE ASN SEQRES 13 A 219 ALA LEU VAL SER GLY ALA SER MET PHE GLY SER GLY SER SEQRES 14 A 219 ASP LEU TRP LEU ARG LYS GLY ASP ILE TYR TYR LEU PHE SEQRES 15 A 219 ASN GLU GLU THR TRP LEU THR ASN ALA ASN LYS ALA GLY SEQRES 16 A 219 LEU SER TYR SER LEU LEU SER ALA CYS PHE ILE GLN ARG SEQRES 17 A 219 GLY ASN ILE CYS TRP ASP VAL GLU ASP HIS SER SEQRES 1 B 219 SER ASN ALA ASP SER LEU PRO GLU ARG ILE ASP LEU PHE SEQRES 2 B 219 VAL SER LEU PHE ASP TYR ASN SER ALA THR THR SER TYR SEQRES 3 B 219 ASP ILE ARG SER ILE GLN THR ASP PHE PRO THR ARG LEU SEQRES 4 B 219 LEU THR PRO ASP SER MET LEU PRO GLN THR SER GLU TYR SEQRES 5 B 219 PRO LEU LYS ASP ILE GLN LEU LEU TYR LYS LEU ALA GLN SEQRES 6 B 219 SER CYS THR GLY LYS LEU PRO LEU SER PRO LEU ILE THR SEQRES 7 B 219 GLU PRO LEU VAL PHE THR ARG SER LEU CYS LYS GLY SER SEQRES 8 B 219 SER LEU SER PRO ARG TRP PHE ALA ARG SER GLY LEU ILE SEQRES 9 B 219 HIS PRO GLY GLY GLY THR TYR ALA PHE ARG TYR ALA GLU SEQRES 10 B 219 LYS TYR PRO ALA GLN PHE ALA ASN LEU LEU PRO TYR MET SEQRES 11 B 219 HIS ILE GLN GLU ARG PRO ASN ALA ALA GLU GLY THR LEU SEQRES 12 B 219 LEU TYR HIS LEU GLN ASN MET GLY GLU ASP ALA ILE ASN SEQRES 13 B 219 ALA LEU VAL SER GLY ALA SER MET PHE GLY SER GLY SER SEQRES 14 B 219 ASP LEU TRP LEU ARG LYS GLY ASP ILE TYR TYR LEU PHE SEQRES 15 B 219 ASN GLU GLU THR TRP LEU THR ASN ALA ASN LYS ALA GLY SEQRES 16 B 219 LEU SER TYR SER LEU LEU SER ALA CYS PHE ILE GLN ARG SEQRES 17 B 219 GLY ASN ILE CYS TRP ASP VAL GLU ASP HIS SER HET GOL A 301 12 HET GOL B 301 6 HET GOL B 302 6 HET EDO B 303 4 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *108(H2 O) HELIX 1 AA1 SER A 39 LEU A 50 1 12 HELIX 2 AA2 PHE A 51 ALA A 56 5 6 HELIX 3 AA3 ILE A 62 PHE A 69 1 8 HELIX 4 AA4 PRO A 70 LEU A 74 5 5 HELIX 5 AA5 THR A 75 LEU A 80 5 6 HELIX 6 AA6 GLN A 82 TYR A 86 5 5 HELIX 7 AA7 PRO A 87 CYS A 101 1 15 HELIX 8 AA8 SER A 108 LEU A 110 5 3 HELIX 9 AA9 ILE A 111 GLY A 124 1 14 HELIX 10 AB1 SER A 128 ARG A 134 1 7 HELIX 11 AB2 THR A 144 TYR A 153 1 10 HELIX 12 AB3 GLN A 156 LEU A 161 1 6 HELIX 13 AB4 PRO A 162 MET A 164 5 3 HELIX 14 AB5 THR A 176 ASN A 183 1 8 HELIX 15 AB6 GLY A 185 SER A 194 1 10 HELIX 16 AB7 ASN A 217 ALA A 228 1 12 HELIX 17 AB8 SER B 39 LEU B 50 1 12 HELIX 18 AB9 PHE B 51 ALA B 56 5 6 HELIX 19 AC1 ILE B 62 PHE B 69 1 8 HELIX 20 AC2 PRO B 70 LEU B 74 5 5 HELIX 21 AC3 THR B 75 LEU B 80 5 6 HELIX 22 AC4 GLN B 82 TYR B 86 5 5 HELIX 23 AC5 PRO B 87 CYS B 101 1 15 HELIX 24 AC6 SER B 108 LEU B 110 5 3 HELIX 25 AC7 ILE B 111 GLY B 124 1 14 HELIX 26 AC8 SER B 128 ARG B 134 1 7 HELIX 27 AC9 THR B 144 TYR B 153 1 10 HELIX 28 AD1 GLN B 156 LEU B 161 1 6 HELIX 29 AD2 PRO B 162 MET B 164 5 3 HELIX 30 AD3 THR B 176 ASN B 183 1 8 HELIX 31 AD4 GLY B 185 GLY B 195 1 11 HELIX 32 AD5 ASN B 217 ALA B 228 1 12 SHEET 1 AA1 4 THR A 58 ASP A 61 0 SHEET 2 AA1 4 ILE A 212 PHE A 216 -1 O TYR A 213 N TYR A 60 SHEET 3 AA1 4 ASP A 204 LYS A 209 -1 N LEU A 205 O PHE A 216 SHEET 4 AA1 4 MET A 198 SER A 201 -1 N PHE A 199 O TRP A 206 SHEET 1 AA2 3 LEU A 230 LEU A 234 0 SHEET 2 AA2 3 ILE B 245 VAL B 249 -1 O CYS B 246 N SER A 233 SHEET 3 AA2 3 ILE B 240 ARG B 242 -1 N ILE B 240 O TRP B 247 SHEET 1 AA3 3 ILE A 240 ARG A 242 0 SHEET 2 AA3 3 ILE A 245 VAL A 249 -1 O TRP A 247 N ILE A 240 SHEET 3 AA3 3 LEU B 230 LEU B 234 -1 O SER B 233 N CYS A 246 SHEET 1 AA4 4 SER B 59 ASP B 61 0 SHEET 2 AA4 4 ILE B 212 PHE B 216 -1 O TYR B 213 N TYR B 60 SHEET 3 AA4 4 ASP B 204 LYS B 209 -1 N LEU B 207 O TYR B 214 SHEET 4 AA4 4 MET B 198 SER B 201 -1 N PHE B 199 O TRP B 206 SSBOND 1 CYS A 101 CYS A 122 1555 1555 2.09 SSBOND 2 CYS A 238 CYS A 246 1555 1555 2.06 SSBOND 3 CYS B 101 CYS B 122 1555 1555 2.12 SSBOND 4 CYS B 238 CYS B 246 1555 1555 2.09 CRYST1 45.592 51.098 65.634 76.11 73.53 88.56 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021934 -0.000553 -0.006545 0.00000 SCALE2 0.000000 0.019576 -0.004903 0.00000 SCALE3 0.000000 0.000000 0.016378 0.00000