HEADER VIRAL PROTEIN 02-OCT-20 7KBC TITLE THE CRYSTAL STRUCTURE OF THE 2009/H1N1/CALIFORNIA PA ENDONUCLEASE TITLE 2 MUTANT E119D (CONSTRUCT WITH TRUNCATED LOOP 51-72) IN COMPLEX WITH TITLE 3 BALOXAVIR ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PA-X; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 GENE: PA-X; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, CLEAVED, VIRAL PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,G.KUMAR,J.SLAVISH,S.W.WHITE REVDAT 3 18-OCT-23 7KBC 1 REMARK REVDAT 2 03-MAR-21 7KBC 1 JRNL REVDAT 1 03-FEB-21 7KBC 0 JRNL AUTH G.KUMAR,M.CUYPERS,R.R.WEBBY,T.R.WEBB,S.W.WHITE JRNL TITL STRUCTURAL INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF THE JRNL TITL 2 ENDONUCLEASE ACTIVITY OF THE INFLUENZA VIRUS CAP-SNATCHING JRNL TITL 3 MECHANISM. JRNL REF NUCLEIC ACIDS RES. V. 49 1609 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33469660 JRNL DOI 10.1093/NAR/GKAA1294 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 12687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.350 REMARK 3 FREE R VALUE TEST SET COUNT : 679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9800 - 3.8500 1.00 2651 160 0.1701 0.2050 REMARK 3 2 3.8500 - 3.0600 1.00 2545 137 0.1878 0.2094 REMARK 3 3 3.0600 - 2.6700 1.00 2494 154 0.2275 0.2695 REMARK 3 4 2.6700 - 2.4300 0.98 2438 136 0.2578 0.2938 REMARK 3 5 2.4300 - 2.2500 0.76 1880 92 0.2820 0.3396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.315 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1600 REMARK 3 ANGLE : 1.162 2156 REMARK 3 CHIRALITY : 0.066 221 REMARK 3 PLANARITY : 0.007 268 REMARK 3 DIHEDRAL : 18.991 586 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1804 -16.4244 3.6045 REMARK 3 T TENSOR REMARK 3 T11: 0.7568 T22: 0.7088 REMARK 3 T33: 0.4798 T12: 0.0321 REMARK 3 T13: 0.0560 T23: 0.1136 REMARK 3 L TENSOR REMARK 3 L11: 5.7362 L22: 4.9865 REMARK 3 L33: 7.3776 L12: -2.7256 REMARK 3 L13: 3.4563 L23: 2.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.2581 S12: 0.2710 S13: -0.9750 REMARK 3 S21: -1.9500 S22: 0.4667 S23: 1.2784 REMARK 3 S31: 0.0067 S32: 0.8241 S33: -0.4075 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7661 -5.3584 4.4203 REMARK 3 T TENSOR REMARK 3 T11: 0.7785 T22: 0.8043 REMARK 3 T33: 0.5169 T12: -0.0411 REMARK 3 T13: 0.0382 T23: 0.2619 REMARK 3 L TENSOR REMARK 3 L11: 9.0816 L22: 5.9463 REMARK 3 L33: 6.9869 L12: 2.8435 REMARK 3 L13: 0.8707 L23: 2.2536 REMARK 3 S TENSOR REMARK 3 S11: -0.3633 S12: 1.4720 S13: 0.9516 REMARK 3 S21: -1.1857 S22: 0.2195 S23: -0.4153 REMARK 3 S31: -1.2294 S32: 0.8307 S33: 0.1771 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4071 -3.7323 16.8792 REMARK 3 T TENSOR REMARK 3 T11: 0.3488 T22: 0.5053 REMARK 3 T33: 0.3389 T12: 0.0799 REMARK 3 T13: -0.0612 T23: 0.1572 REMARK 3 L TENSOR REMARK 3 L11: 2.1098 L22: 6.2019 REMARK 3 L33: 3.4223 L12: 0.3030 REMARK 3 L13: -1.5634 L23: 1.1988 REMARK 3 S TENSOR REMARK 3 S11: -0.2325 S12: 0.2179 S13: 0.1745 REMARK 3 S21: -0.1671 S22: 0.0533 S23: 0.5308 REMARK 3 S31: -0.2063 S32: 0.2364 S33: 0.1725 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1320 11.1537 18.8605 REMARK 3 T TENSOR REMARK 3 T11: 0.4832 T22: 0.8166 REMARK 3 T33: 0.3974 T12: -0.1070 REMARK 3 T13: -0.2051 T23: 0.1309 REMARK 3 L TENSOR REMARK 3 L11: 7.7026 L22: 3.6161 REMARK 3 L33: 6.2871 L12: 3.3182 REMARK 3 L13: -5.1009 L23: -2.6475 REMARK 3 S TENSOR REMARK 3 S11: -0.9456 S12: -0.3188 S13: 0.8281 REMARK 3 S21: 0.0400 S22: -0.4701 S23: -0.1067 REMARK 3 S31: -0.8632 S32: 1.4052 S33: 0.1214 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8486 -0.2636 25.2735 REMARK 3 T TENSOR REMARK 3 T11: 0.5159 T22: 0.7442 REMARK 3 T33: 0.4044 T12: 0.1330 REMARK 3 T13: -0.1826 T23: 0.0825 REMARK 3 L TENSOR REMARK 3 L11: 3.0254 L22: 5.2741 REMARK 3 L33: 1.2981 L12: -0.6186 REMARK 3 L13: -0.4011 L23: 1.3911 REMARK 3 S TENSOR REMARK 3 S11: -0.3292 S12: -0.3054 S13: 0.0264 REMARK 3 S21: 1.2685 S22: 0.3822 S23: -0.7628 REMARK 3 S31: 0.5095 S32: 0.5884 S33: -0.0437 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0958 -9.4934 27.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.6827 T22: 1.1419 REMARK 3 T33: 0.6970 T12: 0.3108 REMARK 3 T13: -0.2542 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 5.5950 L22: 3.2477 REMARK 3 L33: 9.0895 L12: -0.3282 REMARK 3 L13: -0.6614 L23: 0.5575 REMARK 3 S TENSOR REMARK 3 S11: -0.3549 S12: -0.5633 S13: 0.3148 REMARK 3 S21: 0.6731 S22: 0.1828 S23: -1.1808 REMARK 3 S31: 1.1481 S32: -0.1684 S33: -0.1093 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9358 -8.3986 29.5558 REMARK 3 T TENSOR REMARK 3 T11: 0.5497 T22: 0.7018 REMARK 3 T33: 0.3741 T12: 0.1978 REMARK 3 T13: -0.0699 T23: 0.1635 REMARK 3 L TENSOR REMARK 3 L11: 2.8052 L22: 7.0954 REMARK 3 L33: 7.8419 L12: -0.0246 REMARK 3 L13: 0.3982 L23: 1.4554 REMARK 3 S TENSOR REMARK 3 S11: -0.1770 S12: -0.3350 S13: 0.0614 REMARK 3 S21: 0.9195 S22: -0.1248 S23: -0.1850 REMARK 3 S31: 0.3355 S32: 0.1921 S33: 0.2665 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9320 -18.5511 18.9553 REMARK 3 T TENSOR REMARK 3 T11: 0.5276 T22: 0.4679 REMARK 3 T33: 0.4312 T12: 0.1401 REMARK 3 T13: 0.0216 T23: 0.1804 REMARK 3 L TENSOR REMARK 3 L11: 3.6298 L22: 8.0818 REMARK 3 L33: 3.6966 L12: -1.2884 REMARK 3 L13: -2.4753 L23: 4.4463 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: 0.2487 S13: -0.3334 REMARK 3 S21: 0.5190 S22: -0.2413 S23: 0.5156 REMARK 3 S31: 0.7768 S32: -0.3371 S33: 0.1133 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9205 -22.2428 13.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.6330 T22: 0.9932 REMARK 3 T33: 0.5416 T12: 0.3274 REMARK 3 T13: -0.0020 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 5.1137 L22: 8.9088 REMARK 3 L33: 9.5038 L12: 3.6587 REMARK 3 L13: -3.0845 L23: 4.6432 REMARK 3 S TENSOR REMARK 3 S11: 0.1583 S12: -0.3877 S13: -0.7592 REMARK 3 S21: -0.6042 S22: -0.5045 S23: -0.6711 REMARK 3 S31: 0.9116 S32: 0.7703 S33: 0.3007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7KBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1000252165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12694 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 44.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.98150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.98150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.97150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.98150 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.98150 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.97150 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.98150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.98150 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.97150 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.98150 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.98150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.97150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.98150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.98150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.97150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.98150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.98150 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.97150 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.98150 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.98150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.97150 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.98150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.98150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.97150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 113 NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 115 64.58 61.06 REMARK 500 LYS A 137 -71.95 -72.60 REMARK 500 GLU A 141 -81.31 52.96 REMARK 500 THR A 162 -57.66 64.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 202 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 208 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 97.3 REMARK 620 3 ILE A 120 O 83.9 93.5 REMARK 620 4 E4Z A 201 O1 85.6 177.1 87.0 REMARK 620 5 E4Z A 201 O2 102.6 101.8 162.3 77.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 209 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 95.7 REMARK 620 3 E4Z A 201 O2 111.2 90.7 REMARK 620 4 E4Z A 201 O3 86.8 158.0 68.2 REMARK 620 5 HOH A 301 O 172.5 91.4 71.0 87.5 REMARK 620 6 HOH A 305 O 98.2 98.1 148.3 103.2 78.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KAF RELATED DB: PDB REMARK 900 RELATED ID: 7K0W RELATED DB: PDB REMARK 900 RELATED ID: 6W5P RELATED DB: PDB DBREF1 7KBC A 1 50 UNP A0A4P2TE19_9INFA DBREF2 7KBC A A0A4P2TE19 1 50 DBREF 7KBC A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 7KBC MET A -19 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC GLY A -18 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC SER A -17 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC SER A -16 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC HIS A -15 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC HIS A -14 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC HIS A -13 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC HIS A -12 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC HIS A -11 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC HIS A -10 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC SER A -9 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC SER A -8 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC GLY A -7 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC LEU A -6 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC VAL A -5 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC PRO A -4 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC ARG A -3 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC GLY A -2 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC SER A -1 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC HIS A 0 UNP A0A4P2TE1 EXPRESSION TAG SEQADV 7KBC GLY A 51 UNP A0A4P2TE1 LINKER SEQADV 7KBC GLY A 52 UNP A0A4P2TE1 LINKER SEQADV 7KBC SER A 53 UNP A0A4P2TE1 LINKER SEQADV 7KBC ASP A 119 UNP C6H0Y9 GLU 119 ENGINEERED MUTATION SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE ASP ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET E4Z A 201 52 HET QQ4 A 202 40 HET GOL A 203 6 HET GOL A 204 6 HET GOL A 205 6 HET GOL A 206 6 HET GOL A 207 6 HET MN A 208 1 HET MN A 209 1 HET SO4 A 210 5 HETNAM E4Z BALOXAVIR ACID HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 E4Z C24 H19 F2 N3 O4 S FORMUL 3 QQ4 C36 H56 N6 O6 FORMUL 4 GOL 5(C3 H8 O3) FORMUL 9 MN 2(MN 2+) FORMUL 11 SO4 O4 S 2- FORMUL 12 HOH *49(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 52 1 22 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 208 1555 1555 2.21 LINK OE2 GLU A 80 MN MN A 209 1555 1555 2.39 LINK OD2 ASP A 108 MN MN A 208 1555 1555 1.96 LINK OD1 ASP A 108 MN MN A 209 1555 1555 2.11 LINK O ILE A 120 MN MN A 208 1555 1555 2.13 LINK O1 E4Z A 201 MN MN A 208 1555 1555 2.02 LINK O2 E4Z A 201 MN MN A 208 1555 1555 2.34 LINK O2 E4Z A 201 MN MN A 209 1555 1555 2.06 LINK O3 E4Z A 201 MN MN A 209 1555 1555 1.92 LINK MN MN A 209 O HOH A 301 1555 1555 2.45 LINK MN MN A 209 O HOH A 305 1555 1555 2.25 CRYST1 89.963 89.963 133.943 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007466 0.00000